mRNA_H-elongata_contig70631.14725.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70631.14725.1
Unique NamemRNA_H-elongata_contig70631.14725.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig70631.14725.1 vs. uniprot
Match: D0NME6_PHYIT (Caltractin n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NME6_PHYIT)

HSP 1 Score: 127 bits (318), Expect = 1.700e-36
Identity = 66/71 (92.96%), Postives = 66/71 (92.96%), Query Frame = 1 
Query:    4 ARRTPAKRIAKTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMISDIDK 216
            ARR   KR AKTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMI DIDK
Sbjct:    2 ARRISQKRNAKTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMIGDIDK 72
[Close]
BLAST of mRNA_H-elongata_contig70631.14725.1 vs. uniprot
Match: A0A662XQ59_9STRA (Uncharacterized protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=A0A662XQ59_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.550e-35
Identity = 65/71 (91.55%), Postives = 66/71 (92.96%), Query Frame = 1 
Query:    4 ARRTPAKRIAKTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMISDIDK 216
            ARR   KR AKTYERPGLSEEE+EEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMI DIDK
Sbjct:    2 ARRISQKRNAKTYERPGLSEEEVEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMIGDIDK 72
[Close]
BLAST of mRNA_H-elongata_contig70631.14725.1 vs. uniprot
Match: A0A836CPT7_9STRA (Calcium-dependent protein 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPT7_9STRA)

HSP 1 Score: 124 bits (312), Expect = 9.660e-35
Identity = 64/72 (88.89%), Postives = 66/72 (91.67%), Query Frame = 1 
Query:    1 QARRTPAKRIAKTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMISDIDK 216
            Q R    KR AKTYERPGLSEEEIEEIREAFNLFDTDGSG+IDPKELKAAMQSLGFEAKNQTIYQMI+DIDK
Sbjct:    7 QRRAPQGKRAAKTYERPGLSEEEIEEIREAFNLFDTDGSGSIDPKELKAAMQSLGFEAKNQTIYQMIADIDK 78
[Close]
BLAST of mRNA_H-elongata_contig70631.14725.1 vs. uniprot
Match: A0A7S2UVW5_9STRA (Hypothetical protein n=3 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S2UVW5_9STRA)

HSP 1 Score: 122 bits (307), Expect = 4.420e-34
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 1 
Query:    7 RRTPAKRIAKTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMISDID 213
            RRTP +R  KTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMISDID
Sbjct:    2 RRTP-QRNKKTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMISDID 69
[Close]
BLAST of mRNA_H-elongata_contig70631.14725.1 vs. uniprot
Match: A0A7S3K4A4_9STRA (Hypothetical protein n=2 Tax=Pelagomonadales TaxID=54409 RepID=A0A7S3K4A4_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.410e-33
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:   22 KRIAKTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMISDIDK 216
            KR  KTYERPGLSE+EIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMISDIDK
Sbjct:   10 KRPYKTYERPGLSEDEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMISDIDK 74
[Close]
BLAST of mRNA_H-elongata_contig70631.14725.1 vs. uniprot
Match: A0A485KUJ5_9STRA (Aste57867_11335 protein n=36 Tax=Stramenopiles TaxID=33634 RepID=A0A485KUJ5_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.000e-33
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:   22 KRIAKTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMISDID 213
            KR +KTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMI DID
Sbjct:   10 KRASKTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMIGDID 73
[Close]
BLAST of mRNA_H-elongata_contig70631.14725.1 vs. uniprot
Match: A0A662XJ11_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XJ11_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.000e-32
Identity = 66/71 (92.96%), Postives = 66/71 (92.96%), Query Frame = 1 
Query:    4 ARRTPAKRIAKTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMISDIDK 216
            ARR   KR AKTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMI DIDK
Sbjct:  310 ARRISQKRNAKTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMIGDIDK 380
[Close]
BLAST of mRNA_H-elongata_contig70631.14725.1 vs. uniprot
Match: A0A1V9YV47_9STRA (Target of rapamycin complex subunit LST8 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YV47_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.040e-32
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:   19 AKRIAKTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMISDIDK 216
            AKR AKTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMI DIDK
Sbjct:   11 AKRGAKTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMIGDIDK 76
[Close]
BLAST of mRNA_H-elongata_contig70631.14725.1 vs. uniprot
Match: A0A7S1TRX6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRX6_9STRA)

HSP 1 Score: 116 bits (291), Expect = 3.640e-32
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 1 
Query:   40 YERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMISDIDK 216
            YERPGLSEEEIEEIREAFNLFDTDGSGTIDP+ELKAAMQSLGFEAKNQTIYQMISDIDK
Sbjct:   27 YERPGLSEEEIEEIREAFNLFDTDGSGTIDPRELKAAMQSLGFEAKNQTIYQMISDIDK 85
[Close]
BLAST of mRNA_H-elongata_contig70631.14725.1 vs. uniprot
Match: A0A5A8CTE5_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CTE5_CAFRO)

HSP 1 Score: 115 bits (288), Expect = 3.560e-31
Identity = 60/71 (84.51%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    4 ARRTPAKRIAKTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMISDIDK 216
            ARR+P  R  + Y+RPGLSEEEIEEIREAFNLFDTDGSGTIDPKELK+AMQSLGFEAKN TIYQMI DIDK
Sbjct:    4 ARRSP--RRGRAYDRPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKSAMQSLGFEAKNATIYQMIGDIDK 72
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70631.14725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D0NME6_PHYIT1.700e-3692.96Caltractin n=1 Tax=Phytophthora infestans (strain ... [more]
A0A662XQ59_9STRA1.550e-3591.55Uncharacterized protein n=3 Tax=Peronosporaceae Ta... [more]
A0A836CPT7_9STRA9.660e-3588.89Calcium-dependent protein 4 n=1 Tax=Tribonema minu... [more]
A0A7S2UVW5_9STRA4.420e-3494.20Hypothetical protein n=3 Tax=Ochrophyta TaxID=2696... [more]
A0A7S3K4A4_9STRA1.410e-3395.38Hypothetical protein n=2 Tax=Pelagomonadales TaxID... [more]
A0A485KUJ5_9STRA2.000e-3395.31Aste57867_11335 protein n=36 Tax=Stramenopiles Tax... [more]
A0A662XJ11_9STRA1.000e-3292.96Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A1V9YV47_9STRA3.040e-3296.97Target of rapamycin complex subunit LST8 n=1 Tax=T... [more]
A0A7S1TRX6_9STRA3.640e-3298.31Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A5A8CTE5_CAFRO3.560e-3184.51Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70631contigH-elongata_contig70631:2823..3038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.3
Seed ortholog evalue1.5e-27
Seed eggNOG ortholog44056.XP_009035920.1
Preferred nameCEN2
KEGG koko:K16465,ko:K16466
KEGG TC1.I.1
GOsGO:0000086,GO:0000109,GO:0000226,GO:0000278,GO:0000715,GO:0003674,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006294,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007098,GO:0007099,GO:0007346,GO:0008150,GO:0008152,GO:0009987,GO:0010389,GO:0010564,GO:0015630,GO:0016043,GO:0022402,GO:0022406,GO:0022607,GO:0030030,GO:0030031,GO:0031023,GO:0031974,GO:0031981,GO:0032465,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0046483,GO:0046872,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051276,GO:0051298,GO:0051302,GO:0051640,GO:0051641,GO:0051716,GO:0051726,GO:0060271,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070911,GO:0070925,GO:0071704,GO:0071824,GO:0071840,GO:0071942,GO:0090304,GO:0097711,GO:0098534,GO:0120031,GO:0120036,GO:0140056,GO:1901360,GO:1901987,GO:1901990,GO:1902749,GO:1903047,GO:1990391
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0028@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-04_003890.1
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931105.278612-CDS-H-elongata_contig70631:2822..30381622931105.278612-CDS-H-elongata_contig70631:2822..3038Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70631 2823..3038 +
1691679700.1510174-CDS-H-elongata_contig70631:2822..30381691679700.1510174-CDS-H-elongata_contig70631:2822..3038Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70631 2823..3038 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70631.14725.1prot_H-elongata_contig70631.14725.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70631 2823..3038 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70631.14725.1

>prot_H-elongata_contig70631.14725.1 ID=prot_H-elongata_contig70631.14725.1|Name=mRNA_H-elongata_contig70631.14725.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
QARRTPAKRIAKTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAA
MQSLGFEAKNQTIYQMISDIDK
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mRNA from alignment at H-elongata_contig70631:2823..3038+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70631.14725.1 ID=mRNA_H-elongata_contig70631.14725.1|Name=mRNA_H-elongata_contig70631.14725.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig70631:2823..3038+ (Himanthalia elongata Himel1 dioecious)
CAGGCCCGTCGAACTCCCGCGAAGCGAATAGCTAAGACATACGAACGCCC
AGGGTTGTCAGAGGAGGAGATCGAGGAGATTCGAGAAGCGTTCAACTTGT
TCGACACGGACGGGTCGGGAACCATCGACCCCAAGGAGCTCAAGGCTGCC
ATGCAGTCTTTGGGTTTCGAGGCTAAGAACCAGACAATTTACCAGATGAT
AAGCGACATCGATAAG
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Coding sequence (CDS) from alignment at H-elongata_contig70631:2823..3038+

>mRNA_H-elongata_contig70631.14725.1 ID=mRNA_H-elongata_contig70631.14725.1|Name=mRNA_H-elongata_contig70631.14725.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig70631:2823..3038+ (Himanthalia elongata Himel1 dioecious)
CAGGCCCGTCGAACTCCCGCGAAGCGAATAGCTAAGACATACGAACGCCC
AGGGTTGTCAGAGGAGGAGATCGAGGAGATTCGAGAAGCGTTCAACTTGT
TCGACACGGACGGGTCGGGAACCATCGACCCCAAGGAGCTCAAGGCTGCC
ATGCAGTCTTTGGGTTTCGAGGCTAAGAACCAGACAATTTACCAGATGAT
AAGCGACATCGATAAGCAGGCCCGTCGAACTCCCGCGAAGCGAATAGCTA
AGACATACGAACGCCCAGGGTTGTCAGAGGAGGAGATCGAGGAGATTCGA
GAAGCGTTCAACTTGTTCGACACGGACGGGTCGGGAACCATCGACCCCAA
GGAGCTCAAGGCTGCCATGCAGTCTTTGGGTTTCGAGGCTAAGAACCAGA
CAATTTACCAGATGATAAGCGACATCGATAAG
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