mRNA_H-elongata_contig70614.14720.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70614.14720.1
Unique NamemRNA_H-elongata_contig70614.14720.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig70614.14720.1 vs. uniprot
Match: D8LR20_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR20_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 3.230e-12
Identity = 36/48 (75.00%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:  223 AGDGTGGLPGVEGMDLLSMSRATDKFQEQMDSMARRLEGVKMHEQQEE 366
            A DG+GGL GVEGMDLLSM++  DKFQEQMDSM RR+EGV++HEQ+EE
Sbjct:  289 AADGSGGLHGVEGMDLLSMAQKADKFQEQMDSMKRRMEGVELHEQKEE 336
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70614.14720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LR20_ECTSI3.230e-1275.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70614contigH-elongata_contig70614:245..2080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_004700.1
Exons5
Model size465
Cds size465
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70614.14720.1prot_H-elongata_contig70614.14720.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70614 245..2080 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931104.726584-CDS-H-elongata_contig70614:244..3761622931104.726584-CDS-H-elongata_contig70614:244..376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70614 245..376 -
1691679699.8268669-CDS-H-elongata_contig70614:244..3761691679699.8268669-CDS-H-elongata_contig70614:244..376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70614 245..376 -
1622931104.7404282-CDS-H-elongata_contig70614:836..9101622931104.7404282-CDS-H-elongata_contig70614:836..910Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70614 837..910 -
1691679699.8379035-CDS-H-elongata_contig70614:836..9101691679699.8379035-CDS-H-elongata_contig70614:836..910Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70614 837..910 -
1622931104.7603712-CDS-H-elongata_contig70614:1165..12601622931104.7603712-CDS-H-elongata_contig70614:1165..1260Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70614 1166..1260 -
1691679699.8483598-CDS-H-elongata_contig70614:1165..12601691679699.8483598-CDS-H-elongata_contig70614:1165..1260Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70614 1166..1260 -
1622931104.7729642-CDS-H-elongata_contig70614:1535..16661622931104.7729642-CDS-H-elongata_contig70614:1535..1666Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70614 1536..1666 -
1691679699.85905-CDS-H-elongata_contig70614:1535..16661691679699.85905-CDS-H-elongata_contig70614:1535..1666Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70614 1536..1666 -
1622931104.7867148-CDS-H-elongata_contig70614:2047..20801622931104.7867148-CDS-H-elongata_contig70614:2047..2080Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70614 2048..2080 -
1691679699.8708093-CDS-H-elongata_contig70614:2047..20801691679699.8708093-CDS-H-elongata_contig70614:2047..2080Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70614 2048..2080 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70614.14720.1

>prot_H-elongata_contig70614.14720.1 ID=prot_H-elongata_contig70614.14720.1|Name=mRNA_H-elongata_contig70614.14720.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=155bp
ATPPNQEEINKIWASTVERASMRGRRRWGGAGEDGGSLGHGSTSRWGGDR
SNSYRLDRQESEEDPWDDVSAGAEAGDGTGGLPGVEGMDLLSMSRATDKF
QEQMDSMARRLEGVKMHEQQEEDMRKERDKEFQRRRLAAAESSQQQQQQQ
QQQSP
back to top

mRNA from alignment at H-elongata_contig70614:245..2080-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70614.14720.1 ID=mRNA_H-elongata_contig70614.14720.1|Name=mRNA_H-elongata_contig70614.14720.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1836bp|location=Sequence derived from alignment at H-elongata_contig70614:245..2080- (Himanthalia elongata Himel1 dioecious)
GCAACGCCTCCCAACCAAGAGGAAATAAACAAGGTATCAAAAGTCTCGGA
AGTGTTGAGTGAGTGCCCCGAGCGTATGGGCTGACGGATTACCATTCGGC
ATCGATTTTCTTAGTTTTTTAAGGATGTATTTGGAGGGGGAAGGGAAGAG
AAGAGAGAGGATTTGGTTCCTTTTGCCCGCTTTTGCTTTGTACCTTTCAA
TAACGTAAGTCTTTCTTTCTGTACCGCCGCTTTGTGGCTCTTGTTTGGTT
GCTTCGAAGAAAAACAAGCAGCGGCGGCGCTTACTGCAATGCGCTAACCG
CGTGCCCCGGGCTGTACCGCGAAGAGCGTTTCGCTATTCAACTCGGCTTT
TGGTGATTCGCTTGCGCGTGCGCGTGTATGGGTGCCTTGCGGACTGCATA
AATTGCGGAAACAGATCTGGGCTTCGACGGTTGAGCGCGCATCCATGAGG
GGAAGGCGTCGCTGGGGGGGCGCTGGGGAGGATGGTGGCTCCCTTGGTCA
CGGTAGCACAAGCCGGTGGGGAGGCGATCGTTCTAACTCATACAGGTGAG
TCCCCCCCCCCGCCCCCCGCCCCCCGCCCACTCAGAGCAGTTCGATGCTG
AAACTCAGCGTGAAGTAATGCTCAGATTTTGGTGACGCTTATCCGTCGTG
GCAGACTGGGTGGAGAGTAGGGGGCCTTTGTCCCATATCCCCTAGCGCTT
GACGCCTACTGCTGCTGCTGCTGGTGGTAGCGTCATGCCTTGTTTTCGTT
CGTACTCCCGCGCCCGGGTCTTCGCTTGGTGCCTGGTGTTTCTGTTGTTC
GCTTGTGTTGTTTATCGTAGGCTTGATAGGCAAGAGAGCGAGGAAGACCC
GTGGGATGATGTGAGCGCTGGAGCTGAGGCCGGAGACGGCACGGGTGGCC
TGCCCGGGGTGGAAGGTGCTCGGTTCGATTTTGATTAGATTGTGGCAAAA
GTGTGTAAAAATCATCGGATATTTTAATAAGCTTTCTTCGAACAGTTGGT
CGCGTTTATTTGCGTATTTTTCCCATTCTCTCGAGGCGGTTTTGGGCCTC
TAGAATATGTTGCTCCAGTTTTTTACTCGCCTCTGGGGGCCCCGTCAGCT
GCTTGACCCCTTGCCTCACCTGCCCTGGATCAACCGTAACCACAACCCTA
TCGGGACCGACAAAACAAAGGCATGGACCTGTTGTCGATGTCGCGTGCGA
CGGACAAGTTTCAGGAGCAAATGGACTCCATGGCGCGGCGTTTGGTAAGC
CAGCCAGCCGTTGATGTATGATTTTCCCTAGGAGTTGCCACAACCCGCTA
CTGTAGTGCCCGGTGACGCCCCCCCCCCCCCCCCCCCCCCCCTCCGTGGC
TTTGTTTTTTATTATTTTATTTTAATATATTAATTGTTTTNNNNNNNNNN
GCCGTTGTGTGTTGTTTTTCCCCTGGAGTCGCCCCCACCCCCCCGGTGTG
GTGCGTGGGAGCCCCCCCCCCCCCCCCCCCCTTAGGTTGTGATTTATATT
ATATATATATATATAGTAAATTATGGCTCGTTTGTGTGTCCCGTGTAGAG
TCTGGCAATGCGGTCGCTGCTTCGGTTAAAAATGGCCCGCACTGCTTCCC
CGCCCTGAAGAGTTTTTTGTGCGGTGGCATGGAATGAGCGCGATTCGACT
CGTATCAATGAAACATTTGTTATCTTCGAATCGTAACCGCGTTTCATTAT
GCAGGAGGGCGTCAAAATGCACGAGCAGCAGGAGGAAGACATGCGGAAGG
AGCGAGACAAGGAGTTCCAGCGCAGGCGTCTCGCAGCTGCGGAGTCTTCC
CAACAGCAGCAGCAGCAGCAACAACAACAATCGCCG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig70614:245..2080-

>mRNA_H-elongata_contig70614.14720.1 ID=mRNA_H-elongata_contig70614.14720.1|Name=mRNA_H-elongata_contig70614.14720.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=930bp|location=Sequence derived from alignment at H-elongata_contig70614:245..2080- (Himanthalia elongata Himel1 dioecious)
GCAACGCCTCCCAACCAAGAGGAAATAAACAAGGCAACGCCTCCCAACCA
AGAGGAAATAAACAAGATCTGGGCTTCGACGGTTGAGCGCGCATCCATGA
GGGGAAGGCGTCGCTGGGGGGGCGCTGGGGAGGATGGTGGCTCCCTTGGT
CACGGTAGCACAAGCCGGTGGGGAGGCGATCGTTCTAACTCATACAGATC
TGGGCTTCGACGGTTGAGCGCGCATCCATGAGGGGAAGGCGTCGCTGGGG
GGGCGCTGGGGAGGATGGTGGCTCCCTTGGTCACGGTAGCACAAGCCGGT
GGGGAGGCGATCGTTCTAACTCATACAGGCTTGATAGGCAAGAGAGCGAG
GAAGACCCGTGGGATGATGTGAGCGCTGGAGCTGAGGCCGGAGACGGCAC
GGGTGGCCTGCCCGGGGTGGAAGGCTTGATAGGCAAGAGAGCGAGGAAGA
CCCGTGGGATGATGTGAGCGCTGGAGCTGAGGCCGGAGACGGCACGGGTG
GCCTGCCCGGGGTGGAAGGCATGGACCTGTTGTCGATGTCGCGTGCGACG
GACAAGTTTCAGGAGCAAATGGACTCCATGGCGCGGCGTTTGGCATGGAC
CTGTTGTCGATGTCGCGTGCGACGGACAAGTTTCAGGAGCAAATGGACTC
CATGGCGCGGCGTTTGGAGGGCGTCAAAATGCACGAGCAGCAGGAGGAAG
ACATGCGGAAGGAGCGAGACAAGGAGTTCCAGCGCAGGCGTCTCGCAGCT
GCGGAGTCTTCCCAACAGCAGCAGCAGCAGCAACAACAACAATCGCCGGA
GGGCGTCAAAATGCACGAGCAGCAGGAGGAAGACATGCGGAAGGAGCGAG
ACAAGGAGTTCCAGCGCAGGCGTCTCGCAGCTGCGGAGTCTTCCCAACAG
CAGCAGCAGCAGCAACAACAACAATCGCCG
back to top