mRNA_H-elongata_contig706.14718.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig706.14718.1 vs. uniprot
Match: D7G436_ECTSI (Ammonium transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G436_ECTSI) HSP 1 Score: 370 bits (950), Expect = 7.290e-113 Identity = 198/367 (53.95%), Postives = 247/367 (67.30%), Query Frame = 1
Query: 1 GVIDYAGSGVVHMLGGGIGLLIARRVKSREGRFFESRQWH---SSTTLKNYTLARQINEGSFRPNDPAWMTLGCFLLWLGWYGFNCGSGLMISTVAAQNTVGRAAINTTIGAAIACVASMVFEKIYHIWSPKYRRGRDFEDPLRRDPQNLD--------RSLYRANVNITSREIDRIRKHEAEHSGENFRWPFSTHKSLHAAACNGMLAGLVGITAGCATMSAFSAIGVSIVSALVYHVSYRGIICLKIDDAVNASAVHLFCGCWGLIAAGFTVTDTARNDLGYPDGDSCTRIAQFVTNAFMAVLILIWASMCTLLLFLILYCRDMVSKMQAGSEIPAVIDQDLCNFMEKTADQFELQIRKLDELEE 1068
GVID+AGSG+VHM GG IGL ++R+V+SR GRFF ++ W + + LKN+T Q+NE FR NDPAWMTLG FLLWLGWYGFNCGS IST +QN GRAA+NT+IGAA C SM+FE YH W+PKYRRG D EDPL P ++D + A +++ + + +I KH AEH E F WP+STH +LH AACNG+LAGLVGITAGCATMS +AIGVS VSAL+YHVSYRG ICL IDDAV+A AVHL CG WG+IAAGFT + R D GYP C+R AQ TN M +I +A +CT +L+ IL +V + + G + D F + ADQF + R+ ++EE
Sbjct: 178 GVIDFAGSGIVHMFGGAIGLFVSRKVRSRGGRFFPAKHWDGGANGSKLKNHTDQPQLNEAGFRSNDPAWMTLGTFLLWLGWYGFNCGSVSEISTTGSQNAAGRAALNTSIGAAWGCAFSMLFELGYHRWTPKYRRGDDIEDPLHLAPFDVDGGEEADRAERVRVAETHLSKKTLAKIAKHNAEHEKEVFTWPWSTHINLHGAACNGILAGLVGITAGCATMSPHAAIGVSFVSALLYHVSYRGFICLMIDDAVSAGAVHLVCGAWGVIAAGFTGMEGPRLDAGYPPQALCSRGAQVGTNFVMVAIITAYAYLCTFILWAILRGCRLVDQAEEGVVLAKGEDGKFTEFKNRVADQFTQENRRFKKVEE 544
BLAST of mRNA_H-elongata_contig706.14718.1 vs. uniprot
Match: A0A6H5JKF7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKF7_9PHAE) HSP 1 Score: 253 bits (647), Expect = 4.950e-71 Identity = 157/318 (49.37%), Postives = 190/318 (59.75%), Query Frame = 1
Query: 1 GVIDYAGSGVVHMLGGGIGLLIARRVKSREGRFFESRQWHSSTTLKNYTLARQINEGSFRPNDPAWMTLGCFLLWLGWYGFNCGSGLMISTVAAQNTVGRAAINTTIGA-----------------AIACVASMVFEKIYHIWSPKYRRGRDFEDPLRRDPQNLDR-----SLYRANVNITSREIDRIRKHEAEHSGENFRWPFSTHKSLHAAACNGMLAGLVGITAGCATMSAFSAIGVSIVSALVYHVSYRGIICLKIDDAVNASAVHLFCGCWGLIAAGFTVTDTARNDLGYP-DGDSCTRIAQFVTNAFMAVLI 885
GV+D+AGSGVVHMLGGGIGL+++ V +R RF ++ K+ TL R++ + S LL G YGFNCGS L IST +N GRAA+NTTIGA A+ CV+SM FE +YH WSP+YRR DPL PQ + S T+ D + E EH+ FRW STHKS+H AACNG+L GLVG+TAGCATM + AI VSIVSALVYHVSYRGIIC IDDA+NA+AVHL G WG++AAG TV + AR DLG+P D CT Q N MAV+I
Sbjct: 181 GVVDFAGSGVVHMLGGGIGLVLSMVVDNRSDRFIDANPQLVERN-KSATLDRRLFKVSHN------------LLSRGRYGFNCGSTLQISTEETRNAAGRAALNTTIGAGENEHDKHELCYQRAGWAVGCVSSMGFEIMYHWWSPEYRRREFINDPLDYMPQARNTLAGELSSQDPRRRRTTGSTDDAKDPEDEHNSGKFRWRLSTHKSIHGAACNGVLVGLVGVTAGCATMHPWHAIWVSIVSALVYHVSYRGIICCNIDDAINAAAVHLVGGLWGVVAAGLTVDNAARVDLGFPGQEDGCTPENQAWVNVLMAVII 485
BLAST of mRNA_H-elongata_contig706.14718.1 vs. uniprot
Match: D7FL37_ECTSI (Ammonium transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL37_ECTSI) HSP 1 Score: 224 bits (572), Expect = 3.330e-61 Identity = 134/266 (50.38%), Postives = 165/266 (62.03%), Query Frame = 1
Query: 1 GVIDYAGSGVVHMLGGGIGLLIARRVKSREGRFFESRQWHSSTTLKNY--TLARQINEGSFR--PNDPAWMTLGCFLLWLGWYGFNCGSGLMISTVAAQNTVGRAAINTTIGAAIACVASMVFEKIYHIWSPKYRRGRDFEDPLRRDPQNLDRSLYRANVNI-------------TSREIDRIRKHEAEHSGENFRWPFSTHKSLHAAACNGMLAGLVGITAGCATMSAFSAIGVSIVSALVYHVSYRGIICLKIDDAVNASAVHL 747
G +D+AGSGVVHMLGGGIGL+++ V++R RF ++ KN TL R++ + S P D YGFNCGS L IS+ +N GRAA+NTTIGAA+ CV+SM FE +YH WSPKYRRG DPL PQ + + VN T+ D + E EH+ FRW STHKS+H AACNG++ GLVG+TAGCATM + AI VSIVSAL+YHVSYRGIIC KIDDA+NA+AVHL
Sbjct: 181 GFVDFAGSGVVHMLGGGIGLVLSIMVENRSDRFIDA---DPELVEKNTSATLDRRLFKVSHNLLPRDR--------------YGFNCGSTLQISSEETRNAAGRAALNTTIGAAVGCVSSMGFEIMYHWWSPKYRRGEFINDPLDYLPQTKNECSLKGKVNQLSSPAGAGPRRRKTTGATDYVVDPEDEHNHGTFRWRLSTHKSIHGAACNGVIVGLVGVTAGCATMLPWHAIWVSIVSALLYHVSYRGIICCKIDDAINAAAVHL 429
BLAST of mRNA_H-elongata_contig706.14718.1 vs. uniprot
Match: A0A6H5L500_9PHAE (Ammonium_transp domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L500_9PHAE) HSP 1 Score: 211 bits (537), Expect = 3.890e-56 Identity = 123/267 (46.07%), Postives = 147/267 (55.06%), Query Frame = 1
Query: 1 GVIDYAGSGVVHMLGGGIGLLIARRVKSREGRFFESRQWHSSTTLKNYTLARQINEGSFRPNDPAWMTLGCFLLWLGWYGFNCGSGLMISTVAAQNTVGRAAINTTIGA-----------------------------------------------------AIACVASMVFEKIYHIWSPKYRRGRDFEDPLRRDPQNLD--------RSLYRANVNITSREIDRIRKHEAEHSGENFRWPFSTHKSLHAAACNGMLAGLVGITAG 618
GVID+AGSG+VHMLGG IGL I+++V+SR GRFF + W TLKN+T Q+NE FR ND WMTLG FLLWLGWYGFNCGS IST +QN GRAA+NT+IGA A C SM+FE YH WSP+YRRG D EDPL ++D + A ++ + + I KH AEH E F WP+STH +LH AACNG+LAGLVGITAG
Sbjct: 154 GVIDFAGSGIVHMLGGAIGLFISKKVRSRPGRFFPPKHWDG--TLKNHTDQPQLNEAGFRSNDATWMTLGTFLLWLGWYGFNCGSVSEISTTESQNAAGRAALNTSIGAGEHWVLLQFYTCEAPNDSLKKSWSITFEYARGGASIQIEHRTPSYRAQRWRCRAWGCAFSMLFELGYHRWSPEYRRGDDIEDPLHVATFDVDGGEEADRAERVRLAENDLGEKTLAIIAKHNAEHEKEAFTWPWSTHINLHGAACNGILAGLVGITAG 418
BLAST of mRNA_H-elongata_contig706.14718.1 vs. uniprot
Match: A0A7S0EJS1_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EJS1_9CRYP) HSP 1 Score: 124 bits (312), Expect = 6.510e-28 Identity = 95/275 (34.55%), Postives = 122/275 (44.36%), Query Frame = 1
Query: 1 GVIDYAGSGVVHMLGGGIGLLIARRVKSREGRFFESRQWHSSTTLKNYTLARQINEGSFRPNDPAWMTLGCFLLWLGWYGFNCGSGLMISTVAAQNTVGRAAINTTIGAAIACVASMVFEKIYHIWSPKYRRGRDFEDPLRRDPQNLDRSLYRANVNITSREIDRIRKHEAEHSGENFRWPFSTHKSLHAAACNGMLAGLVGITAGCATMSAFSAIGVSIVSALVYHVSYRGIICLKIDDAVNASAVHLFCGCWGLIAAGFTVTDTARNDLGYPD 825
G+ID+AGSGVVHM+GG GL+ A +R GRF S TL + Q LG F+LW GWYGFNCGS LMIS AA N G+ A+NTTI AA A + + K+ H Y ++ + NG+LAGLVGITA CA + + A + V+AL+ H + +I +IDD +AS VH FCG WG+ A G TD GYP+
Sbjct: 74 GMIDFAGSGVVHMVGGFCGLIGAIIAGARRGRFGSD---GSVNTLYDGNNTLQA--------------LGVFILWFGWYGFNCGSTLMISGGAA-NVAGKVAVNTTISAATAAITATFVSKMLH-------------------------GHYNISMGL-----------------------------------NGVLAGLVGITANCAVVDPWMAFIIGFVAALILHGGHFLLIAFRIDDPCDASVVHGFCGMWGIWATGIFCTDKNVQYAGYPN 270
BLAST of mRNA_H-elongata_contig706.14718.1 vs. uniprot
Match: A0A6H5L4K6_9PHAE (Ammonium_transp domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4K6_9PHAE) HSP 1 Score: 123 bits (308), Expect = 1.040e-27 Identity = 69/154 (44.81%), Postives = 92/154 (59.74%), Query Frame = 1
Query: 607 ITAGCATMSAFSAIGVSIVSALVYHVSYRGIICLKIDDAVNASAVHLFCGCWGLIAAGFTVTDTARNDLGYPDGDSCTRIAQFVTNAFMAVLILIWASMCTLLLFLILYCRDMVSKMQAGSEIPAVIDQDLCNFMEKTADQFELQIRKLDELEE 1068
+ AGCATMS +AIGVS VSAL+YHVSYRG IC KIDDAV+A AVHL CG WG+ AAG T + R D GYP C+R Q NA M +I ++A +CT L+ IL +V + + G + F K + F+ + ++ ++EE
Sbjct: 5 LNAGCATMSPHAAIGVSFVSALLYHVSYRGFICRKIDDAVSAGAVHLVCGAWGVFAAGITGMEGPRQDAGYPPQALCSREVQIGLNALMVAIIALYAYICTFFLWAILRGCRLVDQAEQGVVLAKEEGGKFTEFKNKVSTHFQQENKRFKKVEE 158
BLAST of mRNA_H-elongata_contig706.14718.1 vs. uniprot
Match: A0A6T8JUS2_HEMAN (Ammonium transporter (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8JUS2_HEMAN) HSP 1 Score: 124 bits (310), Expect = 5.630e-26 Identity = 97/332 (29.22%), Postives = 155/332 (46.69%), Query Frame = 1
Query: 1 GVIDYAGSGVVHMLGGGIGLLIARRVKSREGRFFESRQWHSSTTLKNYTLARQINEGSFRPNDPAWMTLGCFLLWLGWYGFNCGSGLMISTVAAQNTVGRAAINTTIGAAIACVASMVFEKIYHIWSPKYRRGRDFEDPLRRDPQNLDRSLYRANVNITSREIDRIRKHEAEHSGENFRWPFSTHKSLHAAACNGMLAGLVGITAGCATMSAFSAIGVSIVSALVYHVSYRGIICLKIDDAVNASAVHLFCGCWGLIAAGFTVTDTARNDLGYPD-GDSCTRIAQFVTNAFMAVLILIWASMCTLLLFLILYCRDMVSKMQAGSEIPAVIDQ 993
G+ID+AGSGVVHM+GG GL+ A R GRF + +N+ ++ A+M LG +LW GWYGFNCGS +++ V A G+ A+NTTI AA C+ + TS + + + FS +L NG+LAGLV ITA CA ++ + + + V + +++ R + L+IDD ++A+ +H F G WGL++ G TD A GYP+ +SC+ QF T A++I++W+ + ++++ + K G +PAV+++
Sbjct: 222 GLIDFAGSGVVHMVGGLTGLMGAYLCGPRLGRFDP--------------VTGHVND--MPEHNIAFMALGVGMLWFGWYGFNCGS--VLNFVEAGELAGKVAVNTTIAAAAGCIVGV----------------------------------------FTSYQFENV---------------FSVSVAL-----NGILAGLVSITAPCAVVTPWMSFIIGGVGSSIHYSFRRILFKLQIDDPLDAAPIHAFAGIWGLLSVGIFCTDDAVQYAGYPNINNSCSSGRQFATQVIGALIIIVWSITLSTIVWITV-------KFTIGLRVPAVLEE 468
BLAST of mRNA_H-elongata_contig706.14718.1 vs. uniprot
Match: L1IN89_GUITC (Ammonium transporter n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IN89_GUITC) HSP 1 Score: 122 bits (307), Expect = 1.120e-25 Identity = 102/309 (33.01%), Postives = 138/309 (44.66%), Query Frame = 1
Query: 1 GVIDYAGSGVVHMLGGGIGLLIARRVKSREGRFFESRQWHSSTTLKNYTLARQINEGSFRPNDPAWMTLGCFLLWLGWYGFNCGSGLMISTVAAQNTVGRAAINTTIGAAIACVASMVFEKIYHIWSPKYRRGRDFEDPLRRDPQNLDRSLYRANVNITSREIDRIRKHEAEHSGENFRWPFSTHKSLHAAACNGMLAGLVGITAGCATMSAFSAIGVSIVSALVYHVSYRGIICLKIDDAVNASAVHLFCGCWGLIAAGFTVTDTARNDLGYPDG-DSCTRIAQFVTNAFMAVLILIWASMCTLLLFL 924
G+ID+AGSGVVHM+GG GL+ A +R GRF S TL F N+ LG F+LW GWYGFNCGS LMIS AA N G+ A+N TI AA A + + K + + NI+ NG+LAGLVGITA CA + + A + V+AL+ + + ++ L+IDD +AS VH FCG WG+ A G TD GYP+ ++C QF +++I W +++LFL
Sbjct: 208 GLIDFAGSGVVHMVGGFCGLVGAIIAGARRGRFGPD---GSVNTL-------------FDGNNTL-QALGVFILWFGWYGFNCGSTLMISGGAA-NVAGKVAVNMTISAASAAITATFLAK-----------------------------ALQGHYNISM-------------------------------GLNGVLAGLVGITANCAVVDPWMAFLIGFVAALILYGGHYLLLALRIDDPCDASVVHGFCGMWGIWATGIFCTDKNVQYAGYPNANEACGSGEQFGVQVVGSLVIAAWTIGMSVMLFL 438
BLAST of mRNA_H-elongata_contig706.14718.1 vs. uniprot
Match: A0A7S0TLJ9_HEMAN (Ammonium transporter n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TLJ9_HEMAN) HSP 1 Score: 119 bits (299), Expect = 2.140e-24 Identity = 92/309 (29.77%), Postives = 135/309 (43.69%), Query Frame = 1
Query: 1 GVIDYAGSGVVHMLGGGIGLLIARRVKSREGRFFESRQWHSSTTLKNYTLARQINEGSFRPNDPAWMTLGCFLLWLGWYGFNCGSGLMISTVAAQNTVGRAAINTTIGAAIACVASMVFEKIYHIWSPKYRRGRDFEDPLRRDPQNLDRSLYRANVNITSREIDRIRKHEAEHSGENFRWPFSTHKSLHAAACNGMLAGLVGITAGCATMSAFSAIGVSIVSALVYHVSYRGIICLKIDDAVNASAVHLFCGCWGLIAAGFTVTDTARNDLGYPD-GDSCTRIAQFVTNAFMAVLILIWASMCTLLLFL 924
G+ID+AGSGV HM+GG GL+ A + R GRF + N TL M LG F+LW GWYGFNCGS L +S A N + A+ TTI A A + +V ++ ++ + + NG+LAGLV ITA CA + + A + V ++Y+ ++ ++ L+IDD ++A +H CG WG++A G TD GYP+ D+C R QF A A++I++W+ C LF+
Sbjct: 211 GMIDFAGSGVCHMVGGWCGLIGAVIIGPRLGRFNADGK-PKDMEYYNTTL----------------MALGTFILWFGWYGFNCGSTLAVSGNGA-NVAAKVAMTTTIAGASAALTCVVVARVVE-------------------------GVFDVGMGL-----------------------------------NGILAGLVSITANCAVVDPWMAFIIGCVGGIIYYNAHYLLLRLRIDDPLDAFPIHGLCGLWGVLATGIFCTDANVQYAGYPNVNDACGRGEQFGVQAVGAIIIIVWSVTCATALFM 441
BLAST of mRNA_H-elongata_contig706.14718.1 vs. uniprot
Match: L1INN6_GUITC (Ammonium transporter n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1INN6_GUITC) HSP 1 Score: 119 bits (297), Expect = 2.450e-24 Identity = 100/309 (32.36%), Postives = 136/309 (44.01%), Query Frame = 1
Query: 1 GVIDYAGSGVVHMLGGGIGLLIARRVKSREGRFFESRQWHSSTTLKNYTLARQINEGSFRPNDPAWMTLGCFLLWLGWYGFNCGSGLMISTVAAQNTVGRAAINTTIGAAIACVASMVFEKIYHIWSPKYRRGRDFEDPLRRDPQNLDRSLYRANVNITSREIDRIRKHEAEHSGENFRWPFSTHKSLHAAACNGMLAGLVGITAGCATMSAFSAIGVSIVSALVYHVSYRGIICLKIDDAVNASAVHLFCGCWGLIAAGFTVTDTARNDLGYPDG-DSCTRIAQFVTNAFMAVLILIWASMCTLLLFL 924
G+ID+AGSGVVHM+GG GL+ A +R GRF S TL F N+ LG F+LW GWYGFNCGS LMIS AA N G+ A+N TI AA A + + K + + NI+ NG+LAGLVGITA CA + + A + +A++ + ++ L+IDD +AS VH FCG WG+ A G TD GYP+ ++C QF +++I W +++LFL
Sbjct: 226 GLIDFAGSGVVHMVGGFCGLVGAIIAGARRGRFGPD---GSVNTL-------------FEGNNTL-QALGVFILWFGWYGFNCGSTLMISGGAA-NVAGKVAVNMTISAASAAITATFLAK-----------------------------ALQGHYNISM-------------------------------GLNGVLAGLVGITANCAVVDPWMAFLIGFGAAIILLAGHSLLLYLRIDDPCDASVVHGFCGMWGIWATGIFCTDKNVQYAGYPNANEACGSGEQFGVQVVGSLVIAAWTIGMSVMLFL 456 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig706.14718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig706.14718.1 >prot_H-elongata_contig706.14718.1 ID=prot_H-elongata_contig706.14718.1|Name=mRNA_H-elongata_contig706.14718.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=443bp MLGGGIGLLIARRVKSREGRFFESRQWHSSTTLKNYTLARQINEGSFRPNback to top mRNA from alignment at H-elongata_contig706:3329..9571+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig706.14718.1 ID=mRNA_H-elongata_contig706.14718.1|Name=mRNA_H-elongata_contig706.14718.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6243bp|location=Sequence derived from alignment at H-elongata_contig706:3329..9571+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig706:3329..9571+ >mRNA_H-elongata_contig706.14718.1 ID=mRNA_H-elongata_contig706.14718.1|Name=mRNA_H-elongata_contig706.14718.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2658bp|location=Sequence derived from alignment at H-elongata_contig706:3329..9571+ (Himanthalia elongata Himel1 dioecious)back to top |