mRNA_H-elongata_contig70520.14705.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70520.14705.1
Unique NamemRNA_H-elongata_contig70520.14705.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70520.14705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70520contigH-elongata_contig70520:773..2873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-27_000740.1
Exons2
Model size1642
Cds size1620
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70520.14705.1prot_H-elongata_contig70520.14705.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70520 793..2873 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931102.6407895-UTR-H-elongata_contig70520:772..7921622931102.6407895-UTR-H-elongata_contig70520:772..792Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70520 773..792 -
1691679699.0185318-UTR-H-elongata_contig70520:772..7921691679699.0185318-UTR-H-elongata_contig70520:772..792Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70520 773..792 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931102.6536758-CDS-H-elongata_contig70520:792..12121622931102.6536758-CDS-H-elongata_contig70520:792..1212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70520 793..1212 -
1691679699.028202-CDS-H-elongata_contig70520:792..12121691679699.028202-CDS-H-elongata_contig70520:792..1212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70520 793..1212 -
1622931102.6689456-CDS-H-elongata_contig70520:1673..28731622931102.6689456-CDS-H-elongata_contig70520:1673..2873Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70520 1674..2873 -
1691679699.0371485-CDS-H-elongata_contig70520:1673..28731691679699.0371485-CDS-H-elongata_contig70520:1673..2873Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70520 1674..2873 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70520.14705.1

>prot_H-elongata_contig70520.14705.1 ID=prot_H-elongata_contig70520.14705.1|Name=mRNA_H-elongata_contig70520.14705.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=540bp
GSRHTSGRRRSTHRRSERAPRLGSPAIPSPSTPSPESSRISGSSGAGGSI
PSHSDVTLSSTCRATSPADSSSTVGRNRTPGRSPIVDETKANNDVGIGSV
DPVGGTFRSRVFDARARVRRYAVGLPVRPRLRAPAFQALPSTASSEGGSG
QSSDDQGLSSGTEDPGNVVYDLDEACLSESPTFSCGDCWRAASPPPPLPP
SNHHHRKRVAGRASFLGERTAVPLRAFKPERQLVSLRGQLGEREQDDAET
GSTVTDGPRSLGRASSRESLSEVSVAASGFESEDFPEEDPPEGLLRLPKE
TKEVTAAVLTGTAEQLQSSQEVTADDNEDAASSRRDPGIGAPICEESERR
SRRELEEEIYSLKQRLRKAELKQAAVEATVASVLQRARAAEVARDVKEIQ
VRNLEVKLARYTKSDKHIQEACAQWGQRFQDLSSAISPEFRRHEPLPAVE
EEPSSICEPSQSISSAARVNADVGRRRSLPTAALVTPFTSQGTSLSPVRD
CSDEDGDIVHVWGARRKKVDGRSRRGVAFGATRASVDID*
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mRNA from alignment at H-elongata_contig70520:773..2873-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70520.14705.1 ID=mRNA_H-elongata_contig70520.14705.1|Name=mRNA_H-elongata_contig70520.14705.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2101bp|location=Sequence derived from alignment at H-elongata_contig70520:773..2873- (Himanthalia elongata Himel1 dioecious)
GGTTCTCGACACACGAGCGGTCGCCGGCGATCAACCCACCGCCGCAGCGA
ACGAGCGCCGCGGTTGGGGAGCCCTGCTATTCCATCGCCCTCAACACCAT
CGCCGGAGAGCAGCAGAATCAGCGGTAGTAGTGGAGCCGGTGGATCCATA
CCCTCGCACAGCGACGTCACTCTCTCCAGCACTTGTCGCGCCACGAGTCC
CGCTGACAGCAGCAGCACGGTCGGTCGAAATCGCACTCCCGGTCGTAGTC
CCATTGTCGACGAGACGAAGGCCAACAACGACGTCGGCATTGGCAGCGTG
GACCCCGTCGGCGGAACGTTCCGGTCCAGAGTTTTCGACGCGAGGGCTCG
CGTTCGCAGATATGCCGTAGGCCTGCCCGTCCGCCCTAGGTTACGTGCTC
CTGCTTTCCAGGCCTTGCCGTCCACGGCATCGAGCGAGGGAGGCTCGGGC
CAGTCGAGCGATGACCAGGGACTGTCCTCTGGAACGGAAGACCCGGGAAA
TGTGGTGTACGACCTCGATGAGGCGTGTTTGAGCGAGTCACCCACCTTCT
CTTGTGGTGATTGCTGGAGGGCTGCCTCTCCGCCGCCTCCACTTCCACCG
TCGAATCACCACCACCGGAAGCGTGTAGCGGGAAGAGCAAGTTTTCTTGG
CGAGAGGACCGCTGTGCCCTTGAGGGCTTTCAAGCCTGAGAGGCAGCTAG
TCTCGCTGCGCGGCCAGCTTGGCGAACGAGAACAGGATGACGCCGAGACA
GGCTCGACCGTCACAGATGGCCCTCGTAGTCTAGGGCGAGCATCTTCCCG
CGAATCGCTTTCCGAGGTCTCCGTGGCCGCTTCCGGGTTCGAAAGCGAAG
ATTTTCCAGAAGAAGACCCCCCCGAGGGACTTTTGCGGTTGCCGAAGGAA
ACGAAAGAGGTTACCGCCGCGGTATTGACAGGCACCGCGGAACAGTTGCA
GAGCTCGCAGGAAGTCACAGCCGACGACAACGAAGATGCTGCAAGCTCCC
GTCGAGATCCGGGCATCGGCGCCCCAATTTGTGAGGAGAGTGAGCGGCGC
AGTCGACGGGAACTCGAGGAGGAGATTTATTCGCTGAAGCAAAGGTTGAG
GAAGGCGGAACTGAAGCAAGCTGCCGTCGAGGCTACCGTTGCGAGCGTGT
TACAGCGGGCTCGGGCAGCGGAAGTGGCTCGCGACGTGAAGGAGATTCAG
GTGAGGGTGTGTGTAGATCGTCCACCGCATATTTTTGTGTCTACCAGACC
CCCATTCCCTGCAGGAGAAATCGGACTCATTCGGAAAGATCCGTATTACA
ACTGCAGTACGATCATGCTTCGTCAAGGGAGGCCTCAAAAGTCTCTCCGT
TCAACGGTTTCTTGATGGCGCCCAAAATAAGATCAGAAAAACGAAACTTT
GGTCGTTAACCGAAAAAGAGCGCACGAAAAACAAGAAGCTCGGTGTTTAC
ACACTCACCGGTATCCGAGTCATGGGAAGTCGCATGACATCTTACCCTTT
TGCCTTACGAGCGCCTCGATATAAAATCTCGTCGCAGGCGTCACTTTGCA
GAGCGGAACCATGCCTCGTGTGGTCCACCGCAGTTCCCCACAGACGATTC
AACTTGTCCTTTCCCCACTTGACGGACCTCCTGGATAAAATGTATTCGTA
CTCACGCGCAGGTTCGAAACCTAGAGGTCAAACTCGCGAGGTACACCAAG
AGCGATAAGCACATCCAGGAGGCGTGTGCGCAGTGGGGCCAGCGCTTCCA
GGACTTGTCAAGCGCAATATCGCCAGAGTTCCGGAGGCACGAGCCGTTGC
CCGCGGTGGAAGAAGAGCCTTCGTCGATCTGCGAGCCGAGCCAAAGCATC
AGCAGCGCGGCCCGCGTGAACGCTGACGTGGGGCGACGTCGTTCTTTGCC
CACCGCAGCACTCGTAACGCCTTTTACCTCTCAAGGAACCAGTCTTTCGC
CGGTGCGGGACTGCAGCGACGAAGACGGCGATATCGTTCATGTTTGGGGT
GCGCGGCGAAAGAAAGTGGACGGTCGATCCCGTCGGGGCGTCGCGTTTGG
GGCCACCAGAGCGAGTGTTGATATAGACTAATAAGTCGGTGGTTATGGGA
G
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Coding sequence (CDS) from alignment at H-elongata_contig70520:773..2873-

>mRNA_H-elongata_contig70520.14705.1 ID=mRNA_H-elongata_contig70520.14705.1|Name=mRNA_H-elongata_contig70520.14705.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3240bp|location=Sequence derived from alignment at H-elongata_contig70520:773..2873- (Himanthalia elongata Himel1 dioecious)
GGTTCTCGACACACGAGCGGTCGCCGGCGATCAACCCACCGCCGCAGCGA
ACGAGCGCCGCGGTTGGGGAGCCCTGCTATTCCATCGCCCTCAACACCAT
CGCCGGAGAGCAGCAGAATCAGCGGTAGTAGTGGAGCCGGTGGATCCATA
CCCTCGCACAGCGACGTCACTCTCTCCAGCACTTGTCGCGCCACGAGTCC
CGCTGACAGCAGCAGCACGGTCGGTCGAAATCGCACTCCCGGTCGTAGTC
CCATTGTCGACGAGACGAAGGCCAACAACGACGTCGGCATTGGCAGCGTG
GACCCCGTCGGCGGAACGTTCCGGTCCAGAGTTTTCGACGCGAGGGCTCG
CGTTCGCAGATATGCCGTAGGCCTGCCCGTCCGCCCTAGGTTACGTGCTC
CTGCTTTCCAGGCCTTGCCGTCCACGGCATCGAGCGAGGGAGGCTCGGGC
CAGTCGAGCGATGACCAGGGACTGTCCTCTGGAACGGAAGACCCGGGAAA
TGTGGTGTACGACCTCGATGAGGCGTGTTTGAGCGAGTCACCCACCTTCT
CTTGTGGTGATTGCTGGAGGGCTGCCTCTCCGCCGCCTCCACTTCCACCG
TCGAATCACCACCACCGGAAGCGTGTAGCGGGAAGAGCAAGTTTTCTTGG
CGAGAGGACCGCTGTGCCCTTGAGGGCTTTCAAGCCTGAGAGGCAGCTAG
TCTCGCTGCGCGGCCAGCTTGGCGAACGAGAACAGGATGACGCCGAGACA
GGCTCGACCGTCACAGATGGCCCTCGTAGTCTAGGGCGAGCATCTTCCCG
CGAATCGCTTTCCGAGGTCTCCGTGGCCGCTTCCGGGTTCGAAAGCGAAG
ATTTTCCAGAAGAAGACCCCCCCGAGGGACTTTTGCGGTTGCCGAAGGAA
ACGAAAGAGGTTACCGCCGCGGTATTGACAGGCACCGCGGAACAGTTGCA
GAGCTCGCAGGAAGTCACAGCCGACGACAACGAAGATGCTGCAAGCTCCC
GTCGAGATCCGGGCATCGGCGCCCCAATTTGTGAGGAGAGTGAGCGGCGC
AGTCGACGGGAACTCGAGGAGGAGATTTATTCGCTGAAGCAAAGGTTGAG
GAAGGCGGAACTGAAGCAAGCTGCCGTCGAGGCTACCGTTGCGAGCGTGT
TACAGCGGGCTCGGGCAGCGGAAGTGGCTCGCGACGTGAAGGAGATTCAG
GGTTCTCGACACACGAGCGGTCGCCGGCGATCAACCCACCGCCGCAGCGA
ACGAGCGCCGCGGTTGGGGAGCCCTGCTATTCCATCGCCCTCAACACCAT
CGCCGGAGAGCAGCAGAATCAGCGGTAGTAGTGGAGCCGGTGGATCCATA
CCCTCGCACAGCGACGTCACTCTCTCCAGCACTTGTCGCGCCACGAGTCC
CGCTGACAGCAGCAGCACGGTCGGTCGAAATCGCACTCCCGGTCGTAGTC
CCATTGTCGACGAGACGAAGGCCAACAACGACGTCGGCATTGGCAGCGTG
GACCCCGTCGGCGGAACGTTCCGGTCCAGAGTTTTCGACGCGAGGGCTCG
CGTTCGCAGATATGCCGTAGGCCTGCCCGTCCGCCCTAGGTTACGTGCTC
CTGCTTTCCAGGCCTTGCCGTCCACGGCATCGAGCGAGGGAGGCTCGGGC
CAGTCGAGCGATGACCAGGGACTGTCCTCTGGAACGGAAGACCCGGGAAA
TGTGGTGTACGACCTCGATGAGGCGTGTTTGAGCGAGTCACCCACCTTCT
CTTGTGGTGATTGCTGGAGGGCTGCCTCTCCGCCGCCTCCACTTCCACCG
TCGAATCACCACCACCGGAAGCGTGTAGCGGGAAGAGCAAGTTTTCTTGG
CGAGAGGACCGCTGTGCCCTTGAGGGCTTTCAAGCCTGAGAGGCAGCTAG
TCTCGCTGCGCGGCCAGCTTGGCGAACGAGAACAGGATGACGCCGAGACA
GGCTCGACCGTCACAGATGGCCCTCGTAGTCTAGGGCGAGCATCTTCCCG
CGAATCGCTTTCCGAGGTCTCCGTGGCCGCTTCCGGGTTCGAAAGCGAAG
ATTTTCCAGAAGAAGACCCCCCCGAGGGACTTTTGCGGTTGCCGAAGGAA
ACGAAAGAGGTTACCGCCGCGGTATTGACAGGCACCGCGGAACAGTTGCA
GAGCTCGCAGGAAGTCACAGCCGACGACAACGAAGATGCTGCAAGCTCCC
GTCGAGATCCGGGCATCGGCGCCCCAATTTGTGAGGAGAGTGAGCGGCGC
AGTCGACGGGAACTCGAGGAGGAGATTTATTCGCTGAAGCAAAGGTTGAG
GAAGGCGGAACTGAAGCAAGCTGCCGTCGAGGCTACCGTTGCGAGCGTGT
TACAGCGGGCTCGGGCAGCGGAAGTGGCTCGCGACGTGAAGGAGATTCAG
GTTCGAAACCTAGAGGTCAAACTCGCGAGGTACACCAAGAGCGATAAGCA
CATCCAGGAGGCGTGTGCGCAGTGGGGCCAGCGCTTCCAGGACTTGTCAA
GCGCAATATCGCCAGAGTTCCGGAGGCACGAGCCGTTGCCCGCGGTGGAA
GAAGAGCCTTCGTCGATCTGCGAGCCGAGCCAAAGCATCAGCAGCGCGGC
CCGCGTGAACGCTGACGTGGGGCGACGTCGTTCTTTGCCCACCGCAGCAC
TCGTAACGCCTTTTACCTCTCAAGGAACCAGTCTTTCGCCGGTGCGGGAC
TGCAGCGACGAAGACGGCGATATCGTTCATGTTTGGGGTGCGCGGCGAAA
GAAAGTGGACGGTCGATCCCGTCGGGGCGTCGCGTTTGGGGCCACCAGAG
CGAGTGTTGATATAGACTAAGTTCGAAACCTAGAGGTCAAACTCGCGAGG
TACACCAAGAGCGATAAGCACATCCAGGAGGCGTGTGCGCAGTGGGGCCA
GCGCTTCCAGGACTTGTCAAGCGCAATATCGCCAGAGTTCCGGAGGCACG
AGCCGTTGCCCGCGGTGGAAGAAGAGCCTTCGTCGATCTGCGAGCCGAGC
CAAAGCATCAGCAGCGCGGCCCGCGTGAACGCTGACGTGGGGCGACGTCG
TTCTTTGCCCACCGCAGCACTCGTAACGCCTTTTACCTCTCAAGGAACCA
GTCTTTCGCCGGTGCGGGACTGCAGCGACGAAGACGGCGATATCGTTCAT
GTTTGGGGTGCGCGGCGAAAGAAAGTGGACGGTCGATCCCGTCGGGGCGT
CGCGTTTGGGGCCACCAGAGCGAGTGTTGATATAGACTAA
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