mRNA_H-elongata_contig70497.14704.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig70497.14704.1 vs. uniprot
Match: D8LT56_ECTSI (Decapping nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT56_ECTSI) HSP 1 Score: 365 bits (936), Expect = 1.770e-123 Identity = 175/202 (86.63%), Postives = 187/202 (92.57%), Query Frame = 1
Query: 1 GKDLNHGYLNYVEPDTASSTSEITEMLDETPGLEREEESAHFITYRNNLNKILVAPYSKQKWEIQVFKEGGVIYLEV-MSDRNRGMMDRTSYWGRRFETLCVLGVEGARLDELQRGPNDPARPSYFALFRSWLGSHNLLMGAEIDACRPNNPGRFVEIKTTRNIRDSKDEQIFKKHKTLKYWVQCYLAGVRDLVVGYRDDHG 603
GKDLN GYLNYVEPD+ SSTSEI EMLDETPGLEREEE+AHFITYRNNLNKILV PYSKQKWE++VFKEGGVIYLEV M++RN+G +DRTSYWGRRFETLCVLGVEGARLDELQRGP D RPSY L+RS LGSHNLLMGAEIDACRP +PGRFVEIKTTR IRDSKDEQIFKKHKTLKYW QCYLAGVRD+V+GYRDDHG
Sbjct: 139 GKDLNQGYLNYVEPDSTSSTSEIAEMLDETPGLEREEEAAHFITYRNNLNKILVTPYSKQKWEMEVFKEGGVIYLEVVMTNRNQGKLDRTSYWGRRFETLCVLGVEGARLDELQRGPGDLPRPSYCGLYRSRLGSHNLLMGAEIDACRPGDPGRFVEIKTTRLIRDSKDEQIFKKHKTLKYWAQCYLAGVRDIVLGYRDDHG 340
BLAST of mRNA_H-elongata_contig70497.14704.1 vs. uniprot
Match: A0A6H5JPT0_9PHAE (Decapping nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPT0_9PHAE) HSP 1 Score: 356 bits (913), Expect = 8.990e-122 Identity = 175/214 (81.78%), Postives = 187/214 (87.38%), Query Frame = 1
Query: 1 GKDLNHGYLNYVEPDTASSTSEITEMLDETPGLEREEESAHFITYRNNLNKILVAPYSKQKWEIQ------------VFKEGGVIYLEV-MSDRNRGMMDRTSYWGRRFETLCVLGVEGARLDELQRGPNDPARPSYFALFRSWLGSHNLLMGAEIDACRPNNPGRFVEIKTTRNIRDSKDEQIFKKHKTLKYWVQCYLAGVRDLVVGYRDDHG 603
GKDLN GYLNYVEPD+ SSTSEI EMLDETPGLEREEE+AHFITYRNNLNKILV PYSKQKWE++ VFKEGGVIYLEV M++RN+G +DRTSYWGRRFETLCVLGVEGARLDELQRGP D RPSY L+RS LGSHNLLMGAEIDACRP +PGRFVEIKTTR IRDSKDEQIFKKHKTLKYW QCYLAGVRD+V+GYRDDHG
Sbjct: 3 GKDLNQGYLNYVEPDSTSSTSEIAEMLDETPGLEREEEAAHFITYRNNLNKILVTPYSKQKWEMEHPPLRLDNDPSKVFKEGGVIYLEVVMTNRNQGKLDRTSYWGRRFETLCVLGVEGARLDELQRGPGDLPRPSYCGLYRSRLGSHNLLMGAEIDACRPGDPGRFVEIKTTRLIRDSKDEQIFKKHKTLKYWAQCYLAGVRDIVLGYRDDHG 216
BLAST of mRNA_H-elongata_contig70497.14704.1 vs. uniprot
Match: UPI001CB947C1 (NAD-capped RNA hydrolase DXO1 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB947C1) HSP 1 Score: 140 bits (354), Expect = 8.890e-36 Identity = 83/207 (40.10%), Postives = 123/207 (59.42%), Query Frame = 1
Query: 1 GKDLNHGYLNYVEPDTASSTSEITEMLDETPGLEREEESAHFITYRNNLNKILVAPYSKQK-WEIQVFKEGGVIYLEV--MSDRNRGMMDRT-SYWGRRFETLCVLGVEGARLDELQRGPNDPARPSYFALFRSWLGSHNLLMGAEIDACRPNNPGR--FVEIKTTRNIRDSKDEQIFKKHKTLKYWVQCYLAGVRDLVVGYRDDHG 603
G DL+ G+ ++E + ++L E+ HF+TYRNNLNKI+ Y + + WE+ V K GV+YL+V + +R RG DR SYWG FETL E R D+ + + A Y A+ ++ LG+H +LMGAE+D C + G+ +VE+KT+R + D + E+ F+K K LK+W+Q +LAGV +V+GYRDD G
Sbjct: 250 GADLSQGFDTFIEKKDLGAQG-FGDLLSCIRNKRIPLENMHFVTYRNNLNKIMATAYLRHEPWEMGVHKRKGVVYLDVHKLPERPRGDRDRLMSYWGYCFETLAT---EDPRRDDGEGIHDVDANVEYCAVIKTKLGAHRILMGAEMDCCDSTDDGKRFYVELKTSREL-DYRTEERFEKEKLLKFWIQSFLAGVPYIVIGYRDDKG 451
BLAST of mRNA_H-elongata_contig70497.14704.1 vs. uniprot
Match: A0A251VAT4_HELAN (Decapping nuclease n=2 Tax=Heliantheae alliance TaxID=911341 RepID=A0A251VAT4_HELAN) HSP 1 Score: 138 bits (348), Expect = 7.760e-35 Identity = 83/207 (40.10%), Postives = 121/207 (58.45%), Query Frame = 1
Query: 1 GKDLNHGYLNYVEPDTASSTSEITEMLDETPGLEREEESAHFITYRNNLNKILVAPYSKQK-WEIQVFKEGGVIYLEV--MSDRNRGMMDRT-SYWGRRFETLCVLGVEGARLDELQRGPNDPARPSYFALFRSWLGSHNLLMGAEIDACRPNNPGR--FVEIKTTRNIRDSKDEQIFKKHKTLKYWVQCYLAGVRDLVVGYRDDHG 603
G DLN G+ ++E S ++L ++ HF+TYRNNLNKI+ Y + + WE+ V K GV+YL+V + +R R DR SYWG FETL E R D+ + + A Y A+ ++ LG+H +LMGAE+D C + GR +VE+KT+R + D E+ F++ K LK+W+Q +LAGV +V+GYRDD G
Sbjct: 270 GADLNQGFDTFIEKKDLGSQG-FGDLLACIRNKNIPLQNMHFVTYRNNLNKIMATAYLRHEPWEMGVHKRKGVVYLDVHKLPERPRSERDRRMSYWGYCFETLAT---EDPRRDDGEGIHHVDANVEYCAVIKTKLGAHRILMGAEMDCCDSTDDGRRFYVELKTSREL-DYHTEERFEREKLLKFWIQSFLAGVPFIVIGYRDDAG 471
BLAST of mRNA_H-elongata_contig70497.14704.1 vs. uniprot
Match: A0A7J6XBB6_THATH (Decapping nuclease n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6XBB6_THATH) HSP 1 Score: 135 bits (339), Expect = 2.300e-34 Identity = 79/207 (38.16%), Postives = 118/207 (57.00%), Query Frame = 1
Query: 1 GKDLNHGYLNYVEPDTASSTSEITEMLDETPGLEREEESAHFITYRNNLNKILVAPYSKQK-WEIQVFKEGGVIYLEV--MSDRNRGMMDRTS-YWGRRFETLCVLGVEGARLDELQRGPNDPARPSYFALFRSWLGSHNLLMGAEIDACRPNNPGR--FVEIKTTRNIRDSKDEQIFKKHKTLKYWVQCYLAGVRDLVVGYRDDHG 603
G DLN G+ ++ S ++L E+ HF+TYRNNLNKIL Y K + WE+ V K GV+YL+V + ++ + DR YWG FE L + AR+D D A + ++ ++ LG+H ++MGAE+D C + GR +VE+KT+R + D E F++ K LK+W+Q +LAGV +VVG+RDD+G
Sbjct: 119 GADLNEGFETFIAKRDLGSQG-FGDLLASIRNKNIPLENIHFVTYRNNLNKILATAYIKHEPWEMGVHKRNGVVYLDVHKLPEKPQSHKDRQRCYWGYSFENLAT--EDSARIDGEGMHSID-ANVEFCSVIKTKLGAHRIIMGAEMDCCDSTDDGRRFYVELKTSREVLDYNTEVYFEREKLLKFWIQSFLAGVPYIVVGFRDDNG 321
BLAST of mRNA_H-elongata_contig70497.14704.1 vs. uniprot
Match: UPI00125D723C (decapping nuclease DXO homolog, chloroplastic n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125D723C) HSP 1 Score: 135 bits (339), Expect = 1.140e-33 Identity = 78/210 (37.14%), Postives = 121/210 (57.62%), Query Frame = 1
Query: 1 GKDLNHGYLNYVEPDTASSTSEITEMLDETPGLEREEESAHFITYRNNLNKILVAPYSKQK-WEIQVFKEGGVIYLEV--MSDRNRGMMDRTS-YWGRRFETLCVLGV---EGARLDELQRGPNDPARPSYFALFRSWLGSHNLLMGAEIDACRPNNPGR--FVEIKTTRNIRDSKDEQIFKKHKTLKYWVQCYLAGVRDLVVGYRDDHG 603
G DLN G+ + E S ++L + HF+TYRNNLNKI+ Y + + WE+ V K GV+YL+V + +R + +DR YWG FE+L +G R+ ++ A Y A+ ++ +G+H +LMGAE+D C + GR +VE+KT+R + D + E+ F++ K LK+W+Q +LAGV +VVG+RDD+G
Sbjct: 241 GSDLNEGFDTFTEKRDLGSQG-FGDLLACIRNKNIPLDRMHFVTYRNNLNKIMATAYIRNEPWEMGVHKRKGVVYLDVHKLPERPKSELDRRRCYWGYCFESLATEDPGRSDGDRIHDID------ANVEYCAVIKTKIGAHRILMGAEMDCCDSRDDGRRFYVELKTSRELLDHRTEEKFEREKLLKFWIQSFLAGVPYIVVGFRDDNG 443
BLAST of mRNA_H-elongata_contig70497.14704.1 vs. uniprot
Match: UPI001CFBC52A (NAD-capped RNA hydrolase DXO1 n=2 Tax=Anacardiaceae TaxID=4011 RepID=UPI001CFBC52A) HSP 1 Score: 134 bits (336), Expect = 2.820e-33 Identity = 81/207 (39.13%), Postives = 120/207 (57.97%), Query Frame = 1
Query: 1 GKDLNHGYLNYVEPDTASSTSEITEMLDETPGLEREEESAHFITYRNNLNKILVAPYSKQK-WEIQVFKEGGVIYLEV--MSDRNRGMMDRTS-YWGRRFETLCVLGVEGARLDELQRGPNDPARPSYFALFRSWLGSHNLLMGAEIDACRPNNPGR--FVEIKTTRNIRDSKDEQIFKKHKTLKYWVQCYLAGVRDLVVGYRDDHG 603
G DLN GY ++E S ++L ++ HF+T+RNNLNKIL Y + + WE+ V K GV+Y++V + +R + +DR YWG FE+L E R + + N A Y A+ ++ LG+H LLMGAE+D C + GR +VE+KT+R + D E+ ++K K LK+W+Q +LAGV +VVG+RDD G
Sbjct: 238 GADLNQGYDTFIEKKDLGSEG-FGDLLACIRDKNIPLQNMHFVTFRNNLNKILATAYIRHEPWEMGVHKRNGVVYVDVHKLPERPKSELDRRRCYWGYCFESLAT---EDPRRADGEGIHNVDANVEYCAVIKTKLGAHRLLMGAEMDCCDSTDEGRRFYVELKTSREL-DYHTEERYEKEKLLKFWIQSFLAGVPFIVVGFRDDSG 439
BLAST of mRNA_H-elongata_contig70497.14704.1 vs. uniprot
Match: A0A1D1XXH3_9ARAE (Decapping nuclease n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XXH3_9ARAE) HSP 1 Score: 130 bits (327), Expect = 3.330e-33 Identity = 78/212 (36.79%), Postives = 123/212 (58.02%), Query Frame = 1
Query: 1 GKDLNHGYLNYVEPDTASSTSEITEMLDETPGLEREEESAHFITYRNNLNKILVAPYSKQK-WEIQVFKEGGVIYLEV--MSDRNRGMMDRTS-YWGRRFETLCV-----LGVEGARLDELQRGPNDPARPSYFALFRSWLGSHNLLMGAEIDACRPNNPGR--FVEIKTTRNIRDSKDEQIFKKHKTLKYWVQCYLAGVRDLVVGYRDDHG 603
G DLN G+ +++E S ++L ++ HF+TYRNNLNKIL Y + + W++ V K GV+YL+V + +R + +DR YWG FE L LGV+G +D A + ++ R+ LG+H ++MGAE+D C + G+ +VE+KT+R + D + E+ F++ K LK+W+Q +LAGV +V+G+RDD G
Sbjct: 53 GADLNVGFESFIEKRELGSQG-FGDLLACIRNKNILLQNIHFVTYRNNLNKILATAYMRSEPWKMGVHKRSGVVYLDVHKLPERPQTELDRRRCYWGYSFENLATEGSRDLGVDGHGID---------ANVEFCSVIRTKLGAHRIIMGAEMDCCDSPDDGKRFYVELKTSREL-DYRTEERFEREKLLKFWIQSFLAGVPYIVIGFRDDTG 253
BLAST of mRNA_H-elongata_contig70497.14704.1 vs. uniprot
Match: A0A2J6LFN2_LACSA (Decapping nuclease n=2 Tax=Lactuca TaxID=4235 RepID=A0A2J6LFN2_LACSA) HSP 1 Score: 134 bits (336), Expect = 3.660e-33 Identity = 80/207 (38.65%), Postives = 120/207 (57.97%), Query Frame = 1
Query: 1 GKDLNHGYLNYVEPDTASSTSEITEMLDETPGLEREEESAHFITYRNNLNKILVAPYSKQK-WEIQVFKEGGVIYLEV--MSDRNRGMMDRTS-YWGRRFETLCVLGVEGARLDELQRGPNDPARPSYFALFRSWLGSHNLLMGAEIDACRPNNPGR--FVEIKTTRNIRDSKDEQIFKKHKTLKYWVQCYLAGVRDLVVGYRDDHG 603
G DLN G+ ++E S ++L ++ HF+TYRNNLNKIL Y + + WE+ V K GV+YL+V + +R + +DR YWG FETL E D+ + + A Y ++ ++ LG+H +LMGAE+D C + GR +VE+KT+R + D E+ F++ K LK+W+Q +LAGV +V+GYRDD G
Sbjct: 265 GADLNQGFDTFIEKKDLGSQG-FGDLLACIRSKNIPLQNMHFVTYRNNLNKILATAYLRHEPWEMGVHKRKGVVYLDVHKLPERPKSELDRRRCYWGYCFETLAT---EDPTRDDGEGIHDVNANVEYCSVIKTKLGAHRILMGAEMDCCDSTDEGRRFYVELKTSREL-DYHTEERFEREKLLKFWIQSFLAGVPYIVIGYRDDSG 466
BLAST of mRNA_H-elongata_contig70497.14704.1 vs. uniprot
Match: A0A484NM82_9ASTE (Decapping nuclease n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484NM82_9ASTE) HSP 1 Score: 133 bits (335), Expect = 4.150e-33 Identity = 76/210 (36.19%), Postives = 120/210 (57.14%), Query Frame = 1
Query: 1 GKDLNHGYLNYVEPDTASSTSEITEMLDETPGLEREEESAHFITYRNNLNKILVAPY-SKQKWEIQVFKEGGVIYLEVMS--DRNRGMMDRTS-YWGRRFETLCV--LGVEGARLDELQRGPNDPARPSYFALFRSWLGSHNLLMGAEIDACRP---NNPGRFVEIKTTRNIRDSKDEQIFKKHKTLKYWVQCYLAGVRDLVVGYRDDHG 603
G DLN G+ ++E S + + + E HF+TYRNN+NKI+ Y K+ WE+ V K G++YL+V S +R + +DR YWG FE+L LG +G + A Y ++ ++ +G+H +LMGAE+D C NN ++E+KT+R + D + +IF++ K LK+W+Q ++AGV +VVG+RDD+G
Sbjct: 242 GADLNEGFDTFIEKRDLGSQGFGDLLACIRHNTDIQLEGIHFVTYRNNINKIMATAYIRKEPWEMGVHKRKGIVYLDVHSLPERPKSELDRRRCYWGYCFESLATEDLGRDGIH--------DVDANVEYCSVLKTKIGAHRVLMGAEMDCCDSWDNNNKRFYIELKTSRELLDHRTVEIFEREKLLKFWIQSFIAGVPFIVVGFRDDNG 443 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70497.14704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig70497.14704.1 >prot_H-elongata_contig70497.14704.1 ID=prot_H-elongata_contig70497.14704.1|Name=mRNA_H-elongata_contig70497.14704.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=201bp GKDLNHGYLNYVEPDTASSTSEITEMLDETPGLEREEESAHFITYRNNLNback to top mRNA from alignment at H-elongata_contig70497:115..2680- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig70497.14704.1 ID=mRNA_H-elongata_contig70497.14704.1|Name=mRNA_H-elongata_contig70497.14704.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2566bp|location=Sequence derived from alignment at H-elongata_contig70497:115..2680- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig70497:115..2680- >mRNA_H-elongata_contig70497.14704.1 ID=mRNA_H-elongata_contig70497.14704.1|Name=mRNA_H-elongata_contig70497.14704.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1206bp|location=Sequence derived from alignment at H-elongata_contig70497:115..2680- (Himanthalia elongata Himel1 dioecious)back to top |