mRNA_H-elongata_contig70497.14704.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70497.14704.1
Unique NamemRNA_H-elongata_contig70497.14704.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig70497.14704.1 vs. uniprot
Match: D8LT56_ECTSI (Decapping nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT56_ECTSI)

HSP 1 Score: 365 bits (936), Expect = 1.770e-123
Identity = 175/202 (86.63%), Postives = 187/202 (92.57%), Query Frame = 1
Query:    1 GKDLNHGYLNYVEPDTASSTSEITEMLDETPGLEREEESAHFITYRNNLNKILVAPYSKQKWEIQVFKEGGVIYLEV-MSDRNRGMMDRTSYWGRRFETLCVLGVEGARLDELQRGPNDPARPSYFALFRSWLGSHNLLMGAEIDACRPNNPGRFVEIKTTRNIRDSKDEQIFKKHKTLKYWVQCYLAGVRDLVVGYRDDHG 603
            GKDLN GYLNYVEPD+ SSTSEI EMLDETPGLEREEE+AHFITYRNNLNKILV PYSKQKWE++VFKEGGVIYLEV M++RN+G +DRTSYWGRRFETLCVLGVEGARLDELQRGP D  RPSY  L+RS LGSHNLLMGAEIDACRP +PGRFVEIKTTR IRDSKDEQIFKKHKTLKYW QCYLAGVRD+V+GYRDDHG
Sbjct:  139 GKDLNQGYLNYVEPDSTSSTSEIAEMLDETPGLEREEEAAHFITYRNNLNKILVTPYSKQKWEMEVFKEGGVIYLEVVMTNRNQGKLDRTSYWGRRFETLCVLGVEGARLDELQRGPGDLPRPSYCGLYRSRLGSHNLLMGAEIDACRPGDPGRFVEIKTTRLIRDSKDEQIFKKHKTLKYWAQCYLAGVRDIVLGYRDDHG 340          
BLAST of mRNA_H-elongata_contig70497.14704.1 vs. uniprot
Match: A0A6H5JPT0_9PHAE (Decapping nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPT0_9PHAE)

HSP 1 Score: 356 bits (913), Expect = 8.990e-122
Identity = 175/214 (81.78%), Postives = 187/214 (87.38%), Query Frame = 1
Query:    1 GKDLNHGYLNYVEPDTASSTSEITEMLDETPGLEREEESAHFITYRNNLNKILVAPYSKQKWEIQ------------VFKEGGVIYLEV-MSDRNRGMMDRTSYWGRRFETLCVLGVEGARLDELQRGPNDPARPSYFALFRSWLGSHNLLMGAEIDACRPNNPGRFVEIKTTRNIRDSKDEQIFKKHKTLKYWVQCYLAGVRDLVVGYRDDHG 603
            GKDLN GYLNYVEPD+ SSTSEI EMLDETPGLEREEE+AHFITYRNNLNKILV PYSKQKWE++            VFKEGGVIYLEV M++RN+G +DRTSYWGRRFETLCVLGVEGARLDELQRGP D  RPSY  L+RS LGSHNLLMGAEIDACRP +PGRFVEIKTTR IRDSKDEQIFKKHKTLKYW QCYLAGVRD+V+GYRDDHG
Sbjct:    3 GKDLNQGYLNYVEPDSTSSTSEIAEMLDETPGLEREEEAAHFITYRNNLNKILVTPYSKQKWEMEHPPLRLDNDPSKVFKEGGVIYLEVVMTNRNQGKLDRTSYWGRRFETLCVLGVEGARLDELQRGPGDLPRPSYCGLYRSRLGSHNLLMGAEIDACRPGDPGRFVEIKTTRLIRDSKDEQIFKKHKTLKYWAQCYLAGVRDIVLGYRDDHG 216          
BLAST of mRNA_H-elongata_contig70497.14704.1 vs. uniprot
Match: UPI001CB947C1 (NAD-capped RNA hydrolase DXO1 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB947C1)

HSP 1 Score: 140 bits (354), Expect = 8.890e-36
Identity = 83/207 (40.10%), Postives = 123/207 (59.42%), Query Frame = 1
Query:    1 GKDLNHGYLNYVEPDTASSTSEITEMLDETPGLEREEESAHFITYRNNLNKILVAPYSKQK-WEIQVFKEGGVIYLEV--MSDRNRGMMDRT-SYWGRRFETLCVLGVEGARLDELQRGPNDPARPSYFALFRSWLGSHNLLMGAEIDACRPNNPGR--FVEIKTTRNIRDSKDEQIFKKHKTLKYWVQCYLAGVRDLVVGYRDDHG 603
            G DL+ G+  ++E     +     ++L          E+ HF+TYRNNLNKI+   Y + + WE+ V K  GV+YL+V  + +R RG  DR  SYWG  FETL     E  R D+ +   +  A   Y A+ ++ LG+H +LMGAE+D C   + G+  +VE+KT+R + D + E+ F+K K LK+W+Q +LAGV  +V+GYRDD G
Sbjct:  250 GADLSQGFDTFIEKKDLGAQG-FGDLLSCIRNKRIPLENMHFVTYRNNLNKIMATAYLRHEPWEMGVHKRKGVVYLDVHKLPERPRGDRDRLMSYWGYCFETLAT---EDPRRDDGEGIHDVDANVEYCAVIKTKLGAHRILMGAEMDCCDSTDDGKRFYVELKTSREL-DYRTEERFEKEKLLKFWIQSFLAGVPYIVIGYRDDKG 451          
BLAST of mRNA_H-elongata_contig70497.14704.1 vs. uniprot
Match: A0A251VAT4_HELAN (Decapping nuclease n=2 Tax=Heliantheae alliance TaxID=911341 RepID=A0A251VAT4_HELAN)

HSP 1 Score: 138 bits (348), Expect = 7.760e-35
Identity = 83/207 (40.10%), Postives = 121/207 (58.45%), Query Frame = 1
Query:    1 GKDLNHGYLNYVEPDTASSTSEITEMLDETPGLEREEESAHFITYRNNLNKILVAPYSKQK-WEIQVFKEGGVIYLEV--MSDRNRGMMDRT-SYWGRRFETLCVLGVEGARLDELQRGPNDPARPSYFALFRSWLGSHNLLMGAEIDACRPNNPGR--FVEIKTTRNIRDSKDEQIFKKHKTLKYWVQCYLAGVRDLVVGYRDDHG 603
            G DLN G+  ++E     S     ++L          ++ HF+TYRNNLNKI+   Y + + WE+ V K  GV+YL+V  + +R R   DR  SYWG  FETL     E  R D+ +   +  A   Y A+ ++ LG+H +LMGAE+D C   + GR  +VE+KT+R + D   E+ F++ K LK+W+Q +LAGV  +V+GYRDD G
Sbjct:  270 GADLNQGFDTFIEKKDLGSQG-FGDLLACIRNKNIPLQNMHFVTYRNNLNKIMATAYLRHEPWEMGVHKRKGVVYLDVHKLPERPRSERDRRMSYWGYCFETLAT---EDPRRDDGEGIHHVDANVEYCAVIKTKLGAHRILMGAEMDCCDSTDDGRRFYVELKTSREL-DYHTEERFEREKLLKFWIQSFLAGVPFIVIGYRDDAG 471          
BLAST of mRNA_H-elongata_contig70497.14704.1 vs. uniprot
Match: A0A7J6XBB6_THATH (Decapping nuclease n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6XBB6_THATH)

HSP 1 Score: 135 bits (339), Expect = 2.300e-34
Identity = 79/207 (38.16%), Postives = 118/207 (57.00%), Query Frame = 1
Query:    1 GKDLNHGYLNYVEPDTASSTSEITEMLDETPGLEREEESAHFITYRNNLNKILVAPYSKQK-WEIQVFKEGGVIYLEV--MSDRNRGMMDRTS-YWGRRFETLCVLGVEGARLDELQRGPNDPARPSYFALFRSWLGSHNLLMGAEIDACRPNNPGR--FVEIKTTRNIRDSKDEQIFKKHKTLKYWVQCYLAGVRDLVVGYRDDHG 603
            G DLN G+  ++      S     ++L          E+ HF+TYRNNLNKIL   Y K + WE+ V K  GV+YL+V  + ++ +   DR   YWG  FE L     + AR+D       D A   + ++ ++ LG+H ++MGAE+D C   + GR  +VE+KT+R + D   E  F++ K LK+W+Q +LAGV  +VVG+RDD+G
Sbjct:  119 GADLNEGFETFIAKRDLGSQG-FGDLLASIRNKNIPLENIHFVTYRNNLNKILATAYIKHEPWEMGVHKRNGVVYLDVHKLPEKPQSHKDRQRCYWGYSFENLAT--EDSARIDGEGMHSID-ANVEFCSVIKTKLGAHRIIMGAEMDCCDSTDDGRRFYVELKTSREVLDYNTEVYFEREKLLKFWIQSFLAGVPYIVVGFRDDNG 321          
BLAST of mRNA_H-elongata_contig70497.14704.1 vs. uniprot
Match: UPI00125D723C (decapping nuclease DXO homolog, chloroplastic n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125D723C)

HSP 1 Score: 135 bits (339), Expect = 1.140e-33
Identity = 78/210 (37.14%), Postives = 121/210 (57.62%), Query Frame = 1
Query:    1 GKDLNHGYLNYVEPDTASSTSEITEMLDETPGLEREEESAHFITYRNNLNKILVAPYSKQK-WEIQVFKEGGVIYLEV--MSDRNRGMMDRTS-YWGRRFETLCVLGV---EGARLDELQRGPNDPARPSYFALFRSWLGSHNLLMGAEIDACRPNNPGR--FVEIKTTRNIRDSKDEQIFKKHKTLKYWVQCYLAGVRDLVVGYRDDHG 603
            G DLN G+  + E     S     ++L          +  HF+TYRNNLNKI+   Y + + WE+ V K  GV+YL+V  + +R +  +DR   YWG  FE+L        +G R+ ++       A   Y A+ ++ +G+H +LMGAE+D C   + GR  +VE+KT+R + D + E+ F++ K LK+W+Q +LAGV  +VVG+RDD+G
Sbjct:  241 GSDLNEGFDTFTEKRDLGSQG-FGDLLACIRNKNIPLDRMHFVTYRNNLNKIMATAYIRNEPWEMGVHKRKGVVYLDVHKLPERPKSELDRRRCYWGYCFESLATEDPGRSDGDRIHDID------ANVEYCAVIKTKIGAHRILMGAEMDCCDSRDDGRRFYVELKTSRELLDHRTEEKFEREKLLKFWIQSFLAGVPYIVVGFRDDNG 443          
BLAST of mRNA_H-elongata_contig70497.14704.1 vs. uniprot
Match: UPI001CFBC52A (NAD-capped RNA hydrolase DXO1 n=2 Tax=Anacardiaceae TaxID=4011 RepID=UPI001CFBC52A)

HSP 1 Score: 134 bits (336), Expect = 2.820e-33
Identity = 81/207 (39.13%), Postives = 120/207 (57.97%), Query Frame = 1
Query:    1 GKDLNHGYLNYVEPDTASSTSEITEMLDETPGLEREEESAHFITYRNNLNKILVAPYSKQK-WEIQVFKEGGVIYLEV--MSDRNRGMMDRTS-YWGRRFETLCVLGVEGARLDELQRGPNDPARPSYFALFRSWLGSHNLLMGAEIDACRPNNPGR--FVEIKTTRNIRDSKDEQIFKKHKTLKYWVQCYLAGVRDLVVGYRDDHG 603
            G DLN GY  ++E     S     ++L          ++ HF+T+RNNLNKIL   Y + + WE+ V K  GV+Y++V  + +R +  +DR   YWG  FE+L     E  R  + +   N  A   Y A+ ++ LG+H LLMGAE+D C   + GR  +VE+KT+R + D   E+ ++K K LK+W+Q +LAGV  +VVG+RDD G
Sbjct:  238 GADLNQGYDTFIEKKDLGSEG-FGDLLACIRDKNIPLQNMHFVTFRNNLNKILATAYIRHEPWEMGVHKRNGVVYVDVHKLPERPKSELDRRRCYWGYCFESLAT---EDPRRADGEGIHNVDANVEYCAVIKTKLGAHRLLMGAEMDCCDSTDEGRRFYVELKTSREL-DYHTEERYEKEKLLKFWIQSFLAGVPFIVVGFRDDSG 439          
BLAST of mRNA_H-elongata_contig70497.14704.1 vs. uniprot
Match: A0A1D1XXH3_9ARAE (Decapping nuclease n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XXH3_9ARAE)

HSP 1 Score: 130 bits (327), Expect = 3.330e-33
Identity = 78/212 (36.79%), Postives = 123/212 (58.02%), Query Frame = 1
Query:    1 GKDLNHGYLNYVEPDTASSTSEITEMLDETPGLEREEESAHFITYRNNLNKILVAPYSKQK-WEIQVFKEGGVIYLEV--MSDRNRGMMDRTS-YWGRRFETLCV-----LGVEGARLDELQRGPNDPARPSYFALFRSWLGSHNLLMGAEIDACRPNNPGR--FVEIKTTRNIRDSKDEQIFKKHKTLKYWVQCYLAGVRDLVVGYRDDHG 603
            G DLN G+ +++E     S     ++L          ++ HF+TYRNNLNKIL   Y + + W++ V K  GV+YL+V  + +R +  +DR   YWG  FE L       LGV+G  +D         A   + ++ R+ LG+H ++MGAE+D C   + G+  +VE+KT+R + D + E+ F++ K LK+W+Q +LAGV  +V+G+RDD G
Sbjct:   53 GADLNVGFESFIEKRELGSQG-FGDLLACIRNKNILLQNIHFVTYRNNLNKILATAYMRSEPWKMGVHKRSGVVYLDVHKLPERPQTELDRRRCYWGYSFENLATEGSRDLGVDGHGID---------ANVEFCSVIRTKLGAHRIIMGAEMDCCDSPDDGKRFYVELKTSREL-DYRTEERFEREKLLKFWIQSFLAGVPYIVIGFRDDTG 253          
BLAST of mRNA_H-elongata_contig70497.14704.1 vs. uniprot
Match: A0A2J6LFN2_LACSA (Decapping nuclease n=2 Tax=Lactuca TaxID=4235 RepID=A0A2J6LFN2_LACSA)

HSP 1 Score: 134 bits (336), Expect = 3.660e-33
Identity = 80/207 (38.65%), Postives = 120/207 (57.97%), Query Frame = 1
Query:    1 GKDLNHGYLNYVEPDTASSTSEITEMLDETPGLEREEESAHFITYRNNLNKILVAPYSKQK-WEIQVFKEGGVIYLEV--MSDRNRGMMDRTS-YWGRRFETLCVLGVEGARLDELQRGPNDPARPSYFALFRSWLGSHNLLMGAEIDACRPNNPGR--FVEIKTTRNIRDSKDEQIFKKHKTLKYWVQCYLAGVRDLVVGYRDDHG 603
            G DLN G+  ++E     S     ++L          ++ HF+TYRNNLNKIL   Y + + WE+ V K  GV+YL+V  + +R +  +DR   YWG  FETL     E    D+ +   +  A   Y ++ ++ LG+H +LMGAE+D C   + GR  +VE+KT+R + D   E+ F++ K LK+W+Q +LAGV  +V+GYRDD G
Sbjct:  265 GADLNQGFDTFIEKKDLGSQG-FGDLLACIRSKNIPLQNMHFVTYRNNLNKILATAYLRHEPWEMGVHKRKGVVYLDVHKLPERPKSELDRRRCYWGYCFETLAT---EDPTRDDGEGIHDVNANVEYCSVIKTKLGAHRILMGAEMDCCDSTDEGRRFYVELKTSREL-DYHTEERFEREKLLKFWIQSFLAGVPYIVIGYRDDSG 466          
BLAST of mRNA_H-elongata_contig70497.14704.1 vs. uniprot
Match: A0A484NM82_9ASTE (Decapping nuclease n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484NM82_9ASTE)

HSP 1 Score: 133 bits (335), Expect = 4.150e-33
Identity = 76/210 (36.19%), Postives = 120/210 (57.14%), Query Frame = 1
Query:    1 GKDLNHGYLNYVEPDTASSTSEITEMLDETPGLEREEESAHFITYRNNLNKILVAPY-SKQKWEIQVFKEGGVIYLEVMS--DRNRGMMDRTS-YWGRRFETLCV--LGVEGARLDELQRGPNDPARPSYFALFRSWLGSHNLLMGAEIDACRP---NNPGRFVEIKTTRNIRDSKDEQIFKKHKTLKYWVQCYLAGVRDLVVGYRDDHG 603
            G DLN G+  ++E     S      +       + + E  HF+TYRNN+NKI+   Y  K+ WE+ V K  G++YL+V S  +R +  +DR   YWG  FE+L    LG +G          +  A   Y ++ ++ +G+H +LMGAE+D C     NN   ++E+KT+R + D +  +IF++ K LK+W+Q ++AGV  +VVG+RDD+G
Sbjct:  242 GADLNEGFDTFIEKRDLGSQGFGDLLACIRHNTDIQLEGIHFVTYRNNINKIMATAYIRKEPWEMGVHKRKGIVYLDVHSLPERPKSELDRRRCYWGYCFESLATEDLGRDGIH--------DVDANVEYCSVLKTKIGAHRVLMGAEMDCCDSWDNNNKRFYIELKTSRELLDHRTVEIFEREKLLKFWIQSFIAGVPFIVVGFRDDNG 443          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70497.14704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT56_ECTSI1.770e-12386.63Decapping nuclease n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JPT0_9PHAE8.990e-12281.78Decapping nuclease n=1 Tax=Ectocarpus sp. CCAP 131... [more]
UPI001CB947C18.890e-3640.10NAD-capped RNA hydrolase DXO1 n=1 Tax=Erigeron can... [more]
A0A251VAT4_HELAN7.760e-3540.10Decapping nuclease n=2 Tax=Heliantheae alliance Ta... [more]
A0A7J6XBB6_THATH2.300e-3438.16Decapping nuclease n=1 Tax=Thalictrum thalictroide... [more]
UPI00125D723C1.140e-3337.14decapping nuclease DXO homolog, chloroplastic n=2 ... [more]
UPI001CFBC52A2.820e-3339.13NAD-capped RNA hydrolase DXO1 n=2 Tax=Anacardiacea... [more]
A0A1D1XXH3_9ARAE3.330e-3336.79Decapping nuclease n=1 Tax=Anthurium amnicola TaxI... [more]
A0A2J6LFN2_LACSA3.660e-3338.65Decapping nuclease n=2 Tax=Lactuca TaxID=4235 RepI... [more]
A0A484NM82_9ASTE4.150e-3336.19Decapping nuclease n=3 Tax=Cuscuta sect. Cleistogr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70497contigH-elongata_contig70497:115..2680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score367.1
Seed ortholog evalue5.3e-99
Seed eggNOG ortholog2880.D8LT56
Preferred nameRAI1
KEGG koko:K14845,ko:K18404
GOsGO:0000166,GO:0000291,GO:0000448,GO:0000460,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0000956,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006364,GO:0006366,GO:0006369,GO:0006396,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016075,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016891,GO:0016893,GO:0017076,GO:0018130,GO:0019001,GO:0019003,GO:0019222,GO:0019438,GO:0019439,GO:0022613,GO:0030234,GO:0030846,GO:0031086,GO:0031087,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032774,GO:0032991,GO:0034353,GO:0034428,GO:0034470,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0034661,GO:0036094,GO:0042254,GO:0042273,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0043633,GO:0043634,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050790,GO:0060255,GO:0061695,GO:0065007,GO:0065009,GO:0071025,GO:0071027,GO:0071029,GO:0071035,GO:0071046,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0090730,GO:0097159,GO:0097367,GO:0097659,GO:0098772,GO:0140098,GO:1901265,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1902555,GO:1902911,GO:1905348,GO:1905354,GO:1990174,GO:1990234
EggNOG free text desc.decapping
EggNOG OGsKOG1982@1,KOG1982@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03019,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRAI1-like
Ec32 orthologEc-08_004300.1
Exons5
Model size603
Cds size603
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70497.14704.1prot_H-elongata_contig70497.14704.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70497 115..2680 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931102.524738-CDS-H-elongata_contig70497:114..2161622931102.524738-CDS-H-elongata_contig70497:114..216Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70497 115..216 -
1691679698.9596012-CDS-H-elongata_contig70497:114..2161691679698.9596012-CDS-H-elongata_contig70497:114..216Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70497 115..216 -
1622931102.557345-CDS-H-elongata_contig70497:625..7081622931102.557345-CDS-H-elongata_contig70497:625..708Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70497 626..708 -
1691679698.9717352-CDS-H-elongata_contig70497:625..7081691679698.9717352-CDS-H-elongata_contig70497:625..708Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70497 626..708 -
1622931102.5696807-CDS-H-elongata_contig70497:1165..13881622931102.5696807-CDS-H-elongata_contig70497:1165..1388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70497 1166..1388 -
1691679698.9820306-CDS-H-elongata_contig70497:1165..13881691679698.9820306-CDS-H-elongata_contig70497:1165..1388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70497 1166..1388 -
1622931102.5810237-CDS-H-elongata_contig70497:1737..18271622931102.5810237-CDS-H-elongata_contig70497:1737..1827Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70497 1738..1827 -
1691679698.99999-CDS-H-elongata_contig70497:1737..18271691679698.99999-CDS-H-elongata_contig70497:1737..1827Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70497 1738..1827 -
1622931102.596814-CDS-H-elongata_contig70497:2575..26801622931102.596814-CDS-H-elongata_contig70497:2575..2680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70497 2576..2680 -
1691679699.0091977-CDS-H-elongata_contig70497:2575..26801691679699.0091977-CDS-H-elongata_contig70497:2575..2680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70497 2576..2680 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70497.14704.1

>prot_H-elongata_contig70497.14704.1 ID=prot_H-elongata_contig70497.14704.1|Name=mRNA_H-elongata_contig70497.14704.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=201bp
GKDLNHGYLNYVEPDTASSTSEITEMLDETPGLEREEESAHFITYRNNLN
KILVAPYSKQKWEIQVFKEGGVIYLEVMSDRNRGMMDRTSYWGRRFETLC
VLGVEGARLDELQRGPNDPARPSYFALFRSWLGSHNLLMGAEIDACRPNN
PGRFVEIKTTRNIRDSKDEQIFKKHKTLKYWVQCYLAGVRDLVVGYRDDH
G
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mRNA from alignment at H-elongata_contig70497:115..2680-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70497.14704.1 ID=mRNA_H-elongata_contig70497.14704.1|Name=mRNA_H-elongata_contig70497.14704.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2566bp|location=Sequence derived from alignment at H-elongata_contig70497:115..2680- (Himanthalia elongata Himel1 dioecious)
GGCAAGGACCTGAATCACGGGTACCTCAATTACGTCGAACCCGACACGGC GTCTTCTACGTCGGAGATCACGGAGATGCTAGATGAGACGCCGGGTCTGG AAAGGGTGCGCACGCGCCCCCCTTTGATTGTCGCAAATTCCTGCGTGTGT AGTTTACGGTAGTGTTGAACATATCTACCCGTAGGACGTGACGTCAAGCT GGTGGGCGATTGAAGCCATGAACACGGATCTAACGCGGACGCGCATTTTT ACCGTAGCGTTTGTTACCGGCACCGATAAAAAAATGATGTCCGCGGCTCA ACCCAGATATTGCTTGCGGCTGAAAAATACAATAGCCGGCAAAGTGGTGA CACGGCAAGCCGTGTCGGGTTGTCGAACACGCTCGGCACGTTTCGAGCGA AAAACGCCTTCGAAGTAGGAACACAGGAGGTAATGCCGCCTATTGGTTAA GTAGTTGAGGATTTTGATGATTTCGGTGAAGAGAGAGGTCAACGATGGGC TTGCTGTAGGTACAGGCGCAAGGTACGCGGCAATGCTGAATTAATCCTTC TCTCGGTACACTACTGCCACCAGACTACTGATCCCGAGGTTTGTACTGCA GTCTGCTCTTTCGGTAGGGTGCTGTGGTTGGGAAGAGATCATCCATTAAA AATCCCTTGAGAAACCCACTGCATTAGTAGGCGCAGGAAAAGCTTCCTGT TATTGACCGAGCTTGTTTTCTCAGCGTGCTTCGTCTGCTCACCAACCCGC CTAGGCCGCCCGCCCGCCCGGCTGAATCCCTGTTGTGGTGTGGTGTTCAC CGCTTCACCCCAACGAAAATTATTTTGCGCTTCACATGGCGACGGCGGAG CAGGAGGAAGAGTCGGCCCACTTCATCACCTATCGCAACAACCTCAACAA GATTCTCGTTGCACCGTACTCGAAGCAAAAGTGGGAGATCCAGGTAGGCA CGTATCGTGTATCACCGTATCGTTTCGGACGTATCATATCGTACCACACG GCTACCGTACTGTAGCGCTGTTGGATCAAGGGCGGGGGTGTGTGCGTGAT GACGTGTATGCTGCGTTGGAGGATGTCCACATCACGAACAGCCCTTCGGT TTCTCACCGAGCGTGGTGTGAAGAGCTTGACTTAGCGCGTCGTGGGTTTA CCTTCGGAGGTGGTATTACGCGCTCACACACACATGCATACGCCGTACAC GGTGGCTGAGGCTATCTGCGGGTATATGTGCTGAGCTGCAAACCACGCAC CATGTCGATGTGCTCGCCCTACAAACTATAAACTGGGGACAGGTATTCAA GGAAGGAGGCGTTATTTACCTGGAGGTGATGTCCGATCGCAACCGCGGCA TGATGGATCGCACCAGCTATTGGGGGCGCCGCTTCGAGACGTTGTGTGTG CTGGGGGTGGAAGGAGCCCGCTTGGACGAGCTACAAAGAGGGCCGAATGA TCCGGCGAGGCCGAGCTATTTCGCTCTCTTCAGGTCGTGGTTGGGCAGCC ACAACCTCTTGATGGGTGAGAGTTTTTTTTTATATTTTTCCACGAAGGGT GTGTATATAGTGGCTGCATCGAGAATGTGGGTCAGTTCTGAACCCCTCGA CAAACACATCAGAGCAGATGACAGTAGGGCACCGTGGTTGGACGGGAAGG CAATGACCTCACTCTAAACGCCGGATAAAGCCATTTGTCACGTCATATCT TGCCGAGAAAAATAGCAAAGGGCGATCATGAAAATAATACTGTAGCATGC CATCGGAGGGGAACCTCTCATACCTCCCCCCCCCCCTCGCCCTCTTTATG GGTCTCCATCGGTTGATCCCAAAGACGGGGACATGTCGCCTTCGAGAAAT GTCGGGACGGATCAGAGTCACGTGTGCGAGTGTTTTCTGTGCGTGCTCCT CTCGTTCCGCCTGTAATATTGGTGAAATGTATACCGGATTAATTTGCACA TTGATTGCGTGTGTGGTCTCAGGCGCGGAGATCGATGCTTGCCGGCCTAA CAACCCTGGAAGGTTCGTGGAGATCAAAACCACGAGGAACATCAGAGACT CTAAGGTAAGACAGAGCAGGACAGGGCACGTCAGGAAAGGGCAGGTGCCA CATTAGTAAGAGAACCACGCACAATATTGGAGGTGCCAGTCGTGTTAATG ATTTTCTTCCCTTTCCCGCGATGGATGCCTTTATTTTATTTTATCTTCCC CCTGCCCCGTGTTAATGTGAGAGCGGAGACTTCGACGGGGCTACTACAGC ATTCTAAATCGCAGTTGTCTTGCTGCATCTTGCGTTTATTTGCCGCCACG CCGCGGCAAGGCTATCCTGGGTTGTGTCTGGCGTCCTATAGTATTTGACG CCTGATTTACTCCCTCCCGTCCTCTCCGGCGCTTTAGGCCTTCTTCTTGC TTATCTCCCACCCCCCATATTATTCCCTCTTTTCTGATCCTTATCCTCAA AATACCACGGCCAGGATGAGCAAATCTTCAAGAAGCACAAGACCCTCAAG TACTGGGTGCAGTGTTACCTGGCCGGTGTCAGGGATCTGGTGGTCGGTTA CAGAGACGATCACGGT
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Coding sequence (CDS) from alignment at H-elongata_contig70497:115..2680-

>mRNA_H-elongata_contig70497.14704.1 ID=mRNA_H-elongata_contig70497.14704.1|Name=mRNA_H-elongata_contig70497.14704.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1206bp|location=Sequence derived from alignment at H-elongata_contig70497:115..2680- (Himanthalia elongata Himel1 dioecious)
GGCAAGGACCTGAATCACGGGTACCTCAATTACGTCGAACCCGACACGGC
GTCTTCTACGTCGGAGATCACGGAGATGCTAGATGAGACGCCGGGTCTGG
AAAGGGGCAAGGACCTGAATCACGGGTACCTCAATTACGTCGAACCCGAC
ACGGCGTCTTCTACGTCGGAGATCACGGAGATGCTAGATGAGACGCCGGG
TCTGGAAAGGGAGGAAGAGTCGGCCCACTTCATCACCTATCGCAACAACC
TCAACAAGATTCTCGTTGCACCGTACTCGAAGCAAAAGTGGGAGATCCAG
GAGGAAGAGTCGGCCCACTTCATCACCTATCGCAACAACCTCAACAAGAT
TCTCGTTGCACCGTACTCGAAGCAAAAGTGGGAGATCCAGGTATTCAAGG
AAGGAGGCGTTATTTACCTGGAGGTGATGTCCGATCGCAACCGCGGCATG
ATGGATCGCACCAGCTATTGGGGGCGCCGCTTCGAGACGTTGTGTGTGCT
GGGGGTGGAAGGAGCCCGCTTGGACGAGCTACAAAGAGGGCCGAATGATC
CGGCGAGGCCGAGCTATTTCGCTCTCTTCAGGTCGTGGTTGGGCAGCCAC
AACCTCTTGATGGGTATTCAAGGAAGGAGGCGTTATTTACCTGGAGGTGA
TGTCCGATCGCAACCGCGGCATGATGGATCGCACCAGCTATTGGGGGCGC
CGCTTCGAGACGTTGTGTGTGCTGGGGGTGGAAGGAGCCCGCTTGGACGA
GCTACAAAGAGGGCCGAATGATCCGGCGAGGCCGAGCTATTTCGCTCTCT
TCAGGTCGTGGTTGGGCAGCCACAACCTCTTGATGGGCGCGGAGATCGAT
GCTTGCCGGCCTAACAACCCTGGAAGGTTCGTGGAGATCAAAACCACGAG
GAACATCAGAGACTCTAAGGCGCGGAGATCGATGCTTGCCGGCCTAACAA
CCCTGGAAGGTTCGTGGAGATCAAAACCACGAGGAACATCAGAGACTCTA
AGGATGAGCAAATCTTCAAGAAGCACAAGACCCTCAAGTACTGGGTGCAG
TGTTACCTGGCCGGTGTCAGGGATCTGGTGGTCGGTTACAGAGACGATCA
CGGTGATGAGCAAATCTTCAAGAAGCACAAGACCCTCAAGTACTGGGTGC
AGTGTTACCTGGCCGGTGTCAGGGATCTGGTGGTCGGTTACAGAGACGAT
CACGGT
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