mRNA_H-elongata_contig70464.14703.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig70464.14703.1 vs. uniprot
Match: D7G2K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K0_ECTSI) HSP 1 Score: 155 bits (392), Expect = 1.010e-45 Identity = 83/180 (46.11%), Postives = 98/180 (54.44%), Query Frame = 1
Query: 13 RWGLVPSFTRTGEQPNFFRMFNARSETVAEKPSFRRLMGRRHGAVAFSGFYEWKKDEVGERQPYYFRFRDNRPML---------------------------------------------------------------------V*KEEWDKEDDGGSVMFSYDVLTTSAAPRLTWLHER 345
RWGLVPSFT+ G++P+FFRMFNARSET AEKPSFRRL+GRRHG VAF+GFYEWK+DE GERQPYYF + D+RP+L + + E ++ED GGS+MFSY VLTT AAPRL WLHER
Sbjct: 2 RWGLVPSFTKKGDKPDFFRMFNARSETAAEKPSFRRLVGRRHGVVAFTGFYEWKRDEKGERQPYYFHYADDRPLLFAVLYDTWQQGGDAIQGYGNGGXXXXXXXXXXXXXXXIGDGKAVPTTGGRGGHADLAGEGEGGLRGQAALLEREVEEEDRGGSLMFSYAVLTTKAAPRLEWLHER 181
BLAST of mRNA_H-elongata_contig70464.14703.1 vs. uniprot
Match: A0A6H5JMR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMR4_9PHAE) HSP 1 Score: 154 bits (389), Expect = 2.310e-42 Identity = 83/185 (44.86%), Postives = 99/185 (53.51%), Query Frame = 1
Query: 10 SRWGLVPSFTRTGEQPNFFRMFNARSETVAEKPSFRRLMGRRHGAVAFSGFYEWKKDEVGERQPYYFRFRDNRPMLV*-------------------------------------------------------------------------KEEWDKEDDGGSVMFSYDVLTTSAAPRLTWLHER 345
+RWGLVPSFT+ G++P+FFRMFNARSET AEKPSFRRL+GRRHG VAF+GFYEWK+DE GERQPYYF + D+RP+L+ + E ++ED GGS+MFSY VLTT AAPRL WLHER
Sbjct: 58 TRWGLVPSFTKKGDKPDFFRMFNARSETAAEKPSFRRLVGRRHGVVAFTGFYEWKRDEKGERQPYYFHYADDRPLLLAVLYDTWQQGGDAIRGYGNGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAGEXEGRLRGQAALLEREVEEEDRGGSLMFSYAVLTTKAAPRLEWLHER 242
BLAST of mRNA_H-elongata_contig70464.14703.1 vs. uniprot
Match: A0A835Z2X9_9STRA (DUF159-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2X9_9STRA) HSP 1 Score: 132 bits (331), Expect = 7.330e-36 Identity = 61/124 (49.19%), Postives = 82/124 (66.13%), Query Frame = 1
Query: 16 WGLVPSFTRTGEQPNFFRMFNARSETVAEKPSFRRLMGRRHGAVAFSGFYEWKKDEVGERQPYYFRFRDNRPMLV*KEEWDK--------------EDDGGSVMFSYDVLTTSAAPRLTWLHER 345
WGLVPSF++ ++PNFFRMFNARSETV K F+RLM +R VAF GFYEWKKD GE+QPY+ + D RPML+ +D+ E+D ++++ +LTT ++PRL WLH+R
Sbjct: 77 WGLVPSFSKPEDKPNFFRMFNARSETVNSKSIFKRLMAKRRAVVAFDGFYEWKKDAAGEKQPYFIHYEDGRPMLM-AALYDRARRPTAFERPSDAPEEDDPDHLYTFTILTTDSSPRLAWLHDR 199
BLAST of mRNA_H-elongata_contig70464.14703.1 vs. uniprot
Match: A0A6J1KPK2_CUCMA (LOW QUALITY PROTEIN: uncharacterized protein LOC111497557 n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1KPK2_CUCMA) HSP 1 Score: 124 bits (311), Expect = 9.250e-33 Identity = 55/111 (49.55%), Postives = 80/111 (72.07%), Query Frame = 1
Query: 13 RWGLVPSFTRTGEQPNFFRMFNARSETVAEKPSFRRLMGRRHGAVAFSGFYEWKKDEVGERQPYYFRFRDNRPMLV*KEEWDKEDDGGSVMFSYDVLTTSAAPRLTWLHER 345
+WGL+PSFT E+PN+F+MFNARSE+++EK SFRRL+ +R VA GFYEWKKD ++QPYY F+D +P++ E+ G ++++ +LTTS++P L WLH+R
Sbjct: 65 KWGLIPSFTGKSEKPNYFKMFNARSESISEKASFRRLVPKRRCLVAVEGFYEWKKDG-SKKQPYYIHFKDGQPLVFAALYDSWENPEGESLYTFTILTTSSSPALEWLHDR 174
BLAST of mRNA_H-elongata_contig70464.14703.1 vs. uniprot
Match: A0A2P2K2Z8_RHIMU (Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein-like n=2 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2K2Z8_RHIMU) HSP 1 Score: 126 bits (316), Expect = 1.150e-32 Identity = 59/113 (52.21%), Postives = 80/113 (70.80%), Query Frame = 1
Query: 13 RWGLVPSFTRTGEQPNFFRMFNARSETVAEKPSFRRLMGRRHGAVAFSGFYEWKKDEVGERQPYYFRFRDNRPMLV*K--EEWDKEDDGGSVMFSYDVLTTSAAPRLTWLHER 345
RWGLVPSFT+ E+P+F+RMFNARSE+V EKPSFRRL+ R V GFYEWKKD ++QPYY F+D RP+++ + W + G ++++ +LTTSA+ L WLH+R
Sbjct: 65 RWGLVPSFTKKYEKPDFYRMFNARSESVGEKPSFRRLLTRTRCLVPVEGFYEWKKDG-SKKQPYYIHFKDGRPLVLAALYDHWQNSE--GETLYTFTILTTSASSALLWLHDR 174
BLAST of mRNA_H-elongata_contig70464.14703.1 vs. uniprot
Match: A0A565C637_9BRAS (Uncharacterized protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565C637_9BRAS) HSP 1 Score: 127 bits (319), Expect = 2.600e-32 Identity = 57/113 (50.44%), Postives = 83/113 (73.45%), Query Frame = 1
Query: 13 RWGLVPSFTRTGEQPNFFRMFNARSETVAEKPSFRRLMGRRHGAVAFSGFYEWKKDEVGERQPYYFRFRDNRPMLV*K--EEWDKEDDGGSVMFSYDVLTTSAAPRLTWLHER 345
+WGLVP+FT+ ++P+FF+MFNARSE+V EKPSFRRL+ + VA GFYEWKK E +QPYY F+D+RP++ + W ++ GG ++++ +LTTS++P L WLH+R
Sbjct: 65 KWGLVPNFTKKTDKPDFFKMFNARSESVTEKPSFRRLLPKNRCLVAVDGFYEWKK-EGSRKQPYYIHFKDHRPLVFAALFDSW--QNSGGETLYTFTILTTSSSPALHWLHDR 174
BLAST of mRNA_H-elongata_contig70464.14703.1 vs. uniprot
Match: A0A087SK81_AUXPR (UPF0361 protein yoqW n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SK81_AUXPR) HSP 1 Score: 125 bits (314), Expect = 2.600e-32 Identity = 58/111 (52.25%), Postives = 76/111 (68.47%), Query Frame = 1
Query: 13 RWGLVPSFTRTGEQPNFFRMFNARSETVAEKPSFRRLMGRRHGAVAFSGFYEWKKDEVGERQPYYFRFRDNRPMLV*KEEWDKEDDGGSVMFSYDVLTTSAAPRLTWLHER 345
RWGLVPS+T+ E P+F+RMFNARSET+AEKP+F+RL+ R+ V +GFYEWKK+ +QPYY F RPM++ WD M +Y +LTT + PRL WLH+R
Sbjct: 59 RWGLVPSYTKPDELPDFWRMFNARSETLAEKPTFQRLLSRQRCLVPVAGFYEWKKEVRSAKQPYYVHFEGGRPMVM-AGLWDTWQAQEGPMSTYTILTTDSGPRLGWLHDR 168
BLAST of mRNA_H-elongata_contig70464.14703.1 vs. uniprot
Match: A0A1J3GCT7_NOCCA (Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3GCT7_NOCCA) HSP 1 Score: 121 bits (304), Expect = 3.210e-32 Identity = 56/113 (49.56%), Postives = 80/113 (70.80%), Query Frame = 1
Query: 13 RWGLVPSFTRTGEQPNFFRMFNARSETVAEKPSFRRLMGRRHGAVAFSGFYEWKKDEVGERQPYYFRFRDNRPMLV*K--EEWDKEDDGGSVMFSYDVLTTSAAPRLTWLHER 345
+WGLVPSFT+ ++P+FF+MFNARSE+V EKPSFRRL+ + VA GFYEWKK E ++QPYY F+D RP++ + W + G ++++ +LTTS++ L WLH+R
Sbjct: 66 KWGLVPSFTKKTDKPDFFKMFNARSESVDEKPSFRRLLPKNRCLVAVDGFYEWKK-EGSKKQPYYIHFKDGRPLVFAALFDSW--HNSAGETLYTFTILTTSSSSSLHWLHDR 175
BLAST of mRNA_H-elongata_contig70464.14703.1 vs. uniprot
Match: A0A1S3C6L7_CUCME (putative SOS response-associated peptidase YobE isoform X1 n=2 Tax=Cucumis melo TaxID=3656 RepID=A0A1S3C6L7_CUCME) HSP 1 Score: 122 bits (306), Expect = 5.170e-32 Identity = 55/111 (49.55%), Postives = 79/111 (71.17%), Query Frame = 1
Query: 13 RWGLVPSFTRTGEQPNFFRMFNARSETVAEKPSFRRLMGRRHGAVAFSGFYEWKKDEVGERQPYYFRFRDNRPMLV*KEEWDKEDDGGSVMFSYDVLTTSAAPRLTWLHER 345
+WGL+PSFT E+PN+F+MFNARSE++ EKPSF RL+ +R VA GFYEWKKD ++QPYY F+D +P+ + E+ G +++++ +LTTS +P L WLH+R
Sbjct: 65 KWGLIPSFTEKFEKPNYFKMFNARSESIHEKPSFHRLVPKRRCLVAVEGFYEWKKDG-SKKQPYYIHFKDGKPLALAALYDCWENLEGELLYTFTILTTSPSPALKWLHDR 174
BLAST of mRNA_H-elongata_contig70464.14703.1 vs. uniprot
Match: A0A6J1DZF4_MOMCH (LOW QUALITY PROTEIN: uncharacterized protein LOC111024488 n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1DZF4_MOMCH) HSP 1 Score: 122 bits (305), Expect = 7.290e-32 Identity = 54/113 (47.79%), Postives = 81/113 (71.68%), Query Frame = 1
Query: 13 RWGLVPSFTRTGEQPNFFRMFNARSETVAEKPSFRRLMGRRHGAVAFSGFYEWKKDEVGERQPYYFRFRDNRPMLV*K--EEWDKEDDGGSVMFSYDVLTTSAAPRLTWLHER 345
+WGL+PSFT E+PN+++MFNARSE++ EK SFRRL+ + VA GFYEWKKD ++QPYY F+D RP++ + W+ + G +++++ +LTTS++P L WLH+R
Sbjct: 65 KWGLIPSFTDKSEKPNYYKMFNARSESIREKASFRRLVPKSRCLVAVEGFYEWKKDG-SKKQPYYVHFKDGRPLVFAALYDHWENPE--GELLYTFTILTTSSSPALEWLHDR 174 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70464.14703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig70464.14703.1 >prot_H-elongata_contig70464.14703.1 ID=prot_H-elongata_contig70464.14703.1|Name=mRNA_H-elongata_contig70464.14703.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp MFNARSETVAEKPSFRRLMGRRHGAVAFSGFYEWKKDEVGERQPYYFRFRback to top mRNA from alignment at H-elongata_contig70464:622..1690+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig70464.14703.1 ID=mRNA_H-elongata_contig70464.14703.1|Name=mRNA_H-elongata_contig70464.14703.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1069bp|location=Sequence derived from alignment at H-elongata_contig70464:622..1690+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig70464:622..1690+ >mRNA_H-elongata_contig70464.14703.1 ID=mRNA_H-elongata_contig70464.14703.1|Name=mRNA_H-elongata_contig70464.14703.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig70464:622..1690+ (Himanthalia elongata Himel1 dioecious)back to top |