mRNA_H-elongata_contig70464.14703.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70464.14703.1
Unique NamemRNA_H-elongata_contig70464.14703.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig70464.14703.1 vs. uniprot
Match: D7G2K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K0_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 1.010e-45
Identity = 83/180 (46.11%), Postives = 98/180 (54.44%), Query Frame = 1
Query:   13 RWGLVPSFTRTGEQPNFFRMFNARSETVAEKPSFRRLMGRRHGAVAFSGFYEWKKDEVGERQPYYFRFRDNRPML---------------------------------------------------------------------V*KEEWDKEDDGGSVMFSYDVLTTSAAPRLTWLHER 345
            RWGLVPSFT+ G++P+FFRMFNARSET AEKPSFRRL+GRRHG VAF+GFYEWK+DE GERQPYYF + D+RP+L                                                                     + + E ++ED GGS+MFSY VLTT AAPRL WLHER
Sbjct:    2 RWGLVPSFTKKGDKPDFFRMFNARSETAAEKPSFRRLVGRRHGVVAFTGFYEWKRDEKGERQPYYFHYADDRPLLFAVLYDTWQQGGDAIQGYGNGGXXXXXXXXXXXXXXXIGDGKAVPTTGGRGGHADLAGEGEGGLRGQAALLEREVEEEDRGGSLMFSYAVLTTKAAPRLEWLHER 181          
BLAST of mRNA_H-elongata_contig70464.14703.1 vs. uniprot
Match: A0A6H5JMR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMR4_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 2.310e-42
Identity = 83/185 (44.86%), Postives = 99/185 (53.51%), Query Frame = 1
Query:   10 SRWGLVPSFTRTGEQPNFFRMFNARSETVAEKPSFRRLMGRRHGAVAFSGFYEWKKDEVGERQPYYFRFRDNRPMLV*-------------------------------------------------------------------------KEEWDKEDDGGSVMFSYDVLTTSAAPRLTWLHER 345
            +RWGLVPSFT+ G++P+FFRMFNARSET AEKPSFRRL+GRRHG VAF+GFYEWK+DE GERQPYYF + D+RP+L+                                                                          + E ++ED GGS+MFSY VLTT AAPRL WLHER
Sbjct:   58 TRWGLVPSFTKKGDKPDFFRMFNARSETAAEKPSFRRLVGRRHGVVAFTGFYEWKRDEKGERQPYYFHYADDRPLLLAVLYDTWQQGGDAIRGYGNGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAGEXEGRLRGQAALLEREVEEEDRGGSLMFSYAVLTTKAAPRLEWLHER 242          
BLAST of mRNA_H-elongata_contig70464.14703.1 vs. uniprot
Match: A0A835Z2X9_9STRA (DUF159-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2X9_9STRA)

HSP 1 Score: 132 bits (331), Expect = 7.330e-36
Identity = 61/124 (49.19%), Postives = 82/124 (66.13%), Query Frame = 1
Query:   16 WGLVPSFTRTGEQPNFFRMFNARSETVAEKPSFRRLMGRRHGAVAFSGFYEWKKDEVGERQPYYFRFRDNRPMLV*KEEWDK--------------EDDGGSVMFSYDVLTTSAAPRLTWLHER 345
            WGLVPSF++  ++PNFFRMFNARSETV  K  F+RLM +R   VAF GFYEWKKD  GE+QPY+  + D RPML+    +D+              E+D    ++++ +LTT ++PRL WLH+R
Sbjct:   77 WGLVPSFSKPEDKPNFFRMFNARSETVNSKSIFKRLMAKRRAVVAFDGFYEWKKDAAGEKQPYFIHYEDGRPMLM-AALYDRARRPTAFERPSDAPEEDDPDHLYTFTILTTDSSPRLAWLHDR 199          
BLAST of mRNA_H-elongata_contig70464.14703.1 vs. uniprot
Match: A0A6J1KPK2_CUCMA (LOW QUALITY PROTEIN: uncharacterized protein LOC111497557 n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1KPK2_CUCMA)

HSP 1 Score: 124 bits (311), Expect = 9.250e-33
Identity = 55/111 (49.55%), Postives = 80/111 (72.07%), Query Frame = 1
Query:   13 RWGLVPSFTRTGEQPNFFRMFNARSETVAEKPSFRRLMGRRHGAVAFSGFYEWKKDEVGERQPYYFRFRDNRPMLV*KEEWDKEDDGGSVMFSYDVLTTSAAPRLTWLHER 345
            +WGL+PSFT   E+PN+F+MFNARSE+++EK SFRRL+ +R   VA  GFYEWKKD   ++QPYY  F+D +P++        E+  G  ++++ +LTTS++P L WLH+R
Sbjct:   65 KWGLIPSFTGKSEKPNYFKMFNARSESISEKASFRRLVPKRRCLVAVEGFYEWKKDG-SKKQPYYIHFKDGQPLVFAALYDSWENPEGESLYTFTILTTSSSPALEWLHDR 174          
BLAST of mRNA_H-elongata_contig70464.14703.1 vs. uniprot
Match: A0A2P2K2Z8_RHIMU (Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein-like n=2 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2K2Z8_RHIMU)

HSP 1 Score: 126 bits (316), Expect = 1.150e-32
Identity = 59/113 (52.21%), Postives = 80/113 (70.80%), Query Frame = 1
Query:   13 RWGLVPSFTRTGEQPNFFRMFNARSETVAEKPSFRRLMGRRHGAVAFSGFYEWKKDEVGERQPYYFRFRDNRPMLV*K--EEWDKEDDGGSVMFSYDVLTTSAAPRLTWLHER 345
            RWGLVPSFT+  E+P+F+RMFNARSE+V EKPSFRRL+ R    V   GFYEWKKD   ++QPYY  F+D RP+++    + W   +  G  ++++ +LTTSA+  L WLH+R
Sbjct:   65 RWGLVPSFTKKYEKPDFYRMFNARSESVGEKPSFRRLLTRTRCLVPVEGFYEWKKDG-SKKQPYYIHFKDGRPLVLAALYDHWQNSE--GETLYTFTILTTSASSALLWLHDR 174          
BLAST of mRNA_H-elongata_contig70464.14703.1 vs. uniprot
Match: A0A565C637_9BRAS (Uncharacterized protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565C637_9BRAS)

HSP 1 Score: 127 bits (319), Expect = 2.600e-32
Identity = 57/113 (50.44%), Postives = 83/113 (73.45%), Query Frame = 1
Query:   13 RWGLVPSFTRTGEQPNFFRMFNARSETVAEKPSFRRLMGRRHGAVAFSGFYEWKKDEVGERQPYYFRFRDNRPMLV*K--EEWDKEDDGGSVMFSYDVLTTSAAPRLTWLHER 345
            +WGLVP+FT+  ++P+FF+MFNARSE+V EKPSFRRL+ +    VA  GFYEWKK E   +QPYY  F+D+RP++     + W  ++ GG  ++++ +LTTS++P L WLH+R
Sbjct:   65 KWGLVPNFTKKTDKPDFFKMFNARSESVTEKPSFRRLLPKNRCLVAVDGFYEWKK-EGSRKQPYYIHFKDHRPLVFAALFDSW--QNSGGETLYTFTILTTSSSPALHWLHDR 174          
BLAST of mRNA_H-elongata_contig70464.14703.1 vs. uniprot
Match: A0A087SK81_AUXPR (UPF0361 protein yoqW n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SK81_AUXPR)

HSP 1 Score: 125 bits (314), Expect = 2.600e-32
Identity = 58/111 (52.25%), Postives = 76/111 (68.47%), Query Frame = 1
Query:   13 RWGLVPSFTRTGEQPNFFRMFNARSETVAEKPSFRRLMGRRHGAVAFSGFYEWKKDEVGERQPYYFRFRDNRPMLV*KEEWDKEDDGGSVMFSYDVLTTSAAPRLTWLHER 345
            RWGLVPS+T+  E P+F+RMFNARSET+AEKP+F+RL+ R+   V  +GFYEWKK+    +QPYY  F   RPM++    WD        M +Y +LTT + PRL WLH+R
Sbjct:   59 RWGLVPSYTKPDELPDFWRMFNARSETLAEKPTFQRLLSRQRCLVPVAGFYEWKKEVRSAKQPYYVHFEGGRPMVM-AGLWDTWQAQEGPMSTYTILTTDSGPRLGWLHDR 168          
BLAST of mRNA_H-elongata_contig70464.14703.1 vs. uniprot
Match: A0A1J3GCT7_NOCCA (Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3GCT7_NOCCA)

HSP 1 Score: 121 bits (304), Expect = 3.210e-32
Identity = 56/113 (49.56%), Postives = 80/113 (70.80%), Query Frame = 1
Query:   13 RWGLVPSFTRTGEQPNFFRMFNARSETVAEKPSFRRLMGRRHGAVAFSGFYEWKKDEVGERQPYYFRFRDNRPMLV*K--EEWDKEDDGGSVMFSYDVLTTSAAPRLTWLHER 345
            +WGLVPSFT+  ++P+FF+MFNARSE+V EKPSFRRL+ +    VA  GFYEWKK E  ++QPYY  F+D RP++     + W   +  G  ++++ +LTTS++  L WLH+R
Sbjct:   66 KWGLVPSFTKKTDKPDFFKMFNARSESVDEKPSFRRLLPKNRCLVAVDGFYEWKK-EGSKKQPYYIHFKDGRPLVFAALFDSW--HNSAGETLYTFTILTTSSSSSLHWLHDR 175          
BLAST of mRNA_H-elongata_contig70464.14703.1 vs. uniprot
Match: A0A1S3C6L7_CUCME (putative SOS response-associated peptidase YobE isoform X1 n=2 Tax=Cucumis melo TaxID=3656 RepID=A0A1S3C6L7_CUCME)

HSP 1 Score: 122 bits (306), Expect = 5.170e-32
Identity = 55/111 (49.55%), Postives = 79/111 (71.17%), Query Frame = 1
Query:   13 RWGLVPSFTRTGEQPNFFRMFNARSETVAEKPSFRRLMGRRHGAVAFSGFYEWKKDEVGERQPYYFRFRDNRPMLV*KEEWDKEDDGGSVMFSYDVLTTSAAPRLTWLHER 345
            +WGL+PSFT   E+PN+F+MFNARSE++ EKPSF RL+ +R   VA  GFYEWKKD   ++QPYY  F+D +P+ +       E+  G +++++ +LTTS +P L WLH+R
Sbjct:   65 KWGLIPSFTEKFEKPNYFKMFNARSESIHEKPSFHRLVPKRRCLVAVEGFYEWKKDG-SKKQPYYIHFKDGKPLALAALYDCWENLEGELLYTFTILTTSPSPALKWLHDR 174          
BLAST of mRNA_H-elongata_contig70464.14703.1 vs. uniprot
Match: A0A6J1DZF4_MOMCH (LOW QUALITY PROTEIN: uncharacterized protein LOC111024488 n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1DZF4_MOMCH)

HSP 1 Score: 122 bits (305), Expect = 7.290e-32
Identity = 54/113 (47.79%), Postives = 81/113 (71.68%), Query Frame = 1
Query:   13 RWGLVPSFTRTGEQPNFFRMFNARSETVAEKPSFRRLMGRRHGAVAFSGFYEWKKDEVGERQPYYFRFRDNRPMLV*K--EEWDKEDDGGSVMFSYDVLTTSAAPRLTWLHER 345
            +WGL+PSFT   E+PN+++MFNARSE++ EK SFRRL+ +    VA  GFYEWKKD   ++QPYY  F+D RP++     + W+  +  G +++++ +LTTS++P L WLH+R
Sbjct:   65 KWGLIPSFTDKSEKPNYYKMFNARSESIREKASFRRLVPKSRCLVAVEGFYEWKKDG-SKKQPYYVHFKDGRPLVFAALYDHWENPE--GELLYTFTILTTSSSPALEWLHDR 174          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70464.14703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2K0_ECTSI1.010e-4546.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMR4_9PHAE2.310e-4244.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z2X9_9STRA7.330e-3649.19DUF159-domain-containing protein n=1 Tax=Tribonema... [more]
A0A6J1KPK2_CUCMA9.250e-3349.55LOW QUALITY PROTEIN: uncharacterized protein LOC11... [more]
A0A2P2K2Z8_RHIMU1.150e-3252.21Embryonic stem cell-specific 5-hydroxymethylcytosi... [more]
A0A565C637_9BRAS2.600e-3250.44Uncharacterized protein n=1 Tax=Arabis nemorensis ... [more]
A0A087SK81_AUXPR2.600e-3252.25UPF0361 protein yoqW n=3 Tax=Auxenochlorella proto... [more]
A0A1J3GCT7_NOCCA3.210e-3249.56Embryonic stem cell-specific 5-hydroxymethylcytosi... [more]
A0A1S3C6L7_CUCME5.170e-3249.55putative SOS response-associated peptidase YobE is... [more]
A0A6J1DZF4_MOMCH7.290e-3247.79LOW QUALITY PROTEIN: uncharacterized protein LOC11... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70464contigH-elongata_contig70464:622..1690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.0
Seed ortholog evalue2.4e-20
Seed eggNOG ortholog2880.D7G2K0
KEGG koko:K09518,ko:K13109
KEGG Pathwayko04141,map04141
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
EggNOG free text desc.Specifically binds 5-hydroxymethylcytosine (5hmC)- containing DNA in stem cells, suggesting that it acts as a specific reader of 5hmC in stem cells. May act as a peptidase
EggNOG OGsCOG2135@1,KOG2618@2759
Ec32 ortholog descriptionProtein of unknown function DUF159
Ec32 orthologEc-11_002520.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041,ko03110
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size345
Cds size174
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70464.14703.1prot_H-elongata_contig70464.14703.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70464 691..1588 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931102.411297-UTR-H-elongata_contig70464:621..6901622931102.411297-UTR-H-elongata_contig70464:621..690Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70464 622..690 +
1691679698.9037855-UTR-H-elongata_contig70464:621..6901691679698.9037855-UTR-H-elongata_contig70464:621..690Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70464 622..690 +
1622931102.478932-UTR-H-elongata_contig70464:1588..16901622931102.478932-UTR-H-elongata_contig70464:1588..1690Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70464 1589..1690 +
1691679698.949604-UTR-H-elongata_contig70464:1588..16901691679698.949604-UTR-H-elongata_contig70464:1588..1690Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70464 1589..1690 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931102.4302776-CDS-H-elongata_contig70464:690..7141622931102.4302776-CDS-H-elongata_contig70464:690..714Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70464 691..714 +
1691679698.9188004-CDS-H-elongata_contig70464:690..7141691679698.9188004-CDS-H-elongata_contig70464:690..714Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70464 691..714 +
1622931102.4449887-CDS-H-elongata_contig70464:870..10181622931102.4449887-CDS-H-elongata_contig70464:870..1018Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70464 871..1018 +
1691679698.931445-CDS-H-elongata_contig70464:870..10181691679698.931445-CDS-H-elongata_contig70464:870..1018Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70464 871..1018 +
1622931102.4662182-CDS-H-elongata_contig70464:1586..15881622931102.4662182-CDS-H-elongata_contig70464:1586..1588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70464 1587..1588 +
1691679698.9409952-CDS-H-elongata_contig70464:1586..15881691679698.9409952-CDS-H-elongata_contig70464:1586..1588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70464 1587..1588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70464.14703.1

>prot_H-elongata_contig70464.14703.1 ID=prot_H-elongata_contig70464.14703.1|Name=mRNA_H-elongata_contig70464.14703.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
MFNARSETVAEKPSFRRLMGRRHGAVAFSGFYEWKKDEVGERQPYYFRFR
DNRPMLV*
back to top

mRNA from alignment at H-elongata_contig70464:622..1690+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70464.14703.1 ID=mRNA_H-elongata_contig70464.14703.1|Name=mRNA_H-elongata_contig70464.14703.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1069bp|location=Sequence derived from alignment at H-elongata_contig70464:622..1690+ (Himanthalia elongata Himel1 dioecious)
CTTACGAAAAGCAGGTGGGGCCTCGTACCGTCCTTCACCAGAACTGGAGA ACAACCCAACTTCTTCAGAATGTTCAACGCAAGGAGCGAGACGGTACCCC CCCCCCCCTCGTCTGAGCCTCCCTTTTCCCTTTTCGCTTTCATTTTATTA TTTTTTATACATATATGTAATATATATATTCTCTCTCTCCTCTCTCCTCG ACGTGGGTGCGTGTGCCACCTAACTCCCTACCCCCCCCCCCAAAAAAAGG TGGCTGAGAAGCCATCATTTCGGCGCCTGATGGGTCGTCGGCACGGCGCG GTGGCGTTCTCTGGATTCTACGAGTGGAAGAAGGACGAGGTGGGGGAGAG ACAACCATACTACTTCCGCTTCCGGGACAACAGGCCGATGCTGGTATGTT GGTATGCTGGTGCGCTCGTTGCGAGAAAGGGAAAATTGCCGAAGCATAGC AAAGCGCAGCGCGGGAGGCAATAGCCAACCGACAGCCGACCAAGAGTCAT CCTGGTTCGGCGTTGCTGTACATTCGATGTTTTTTTGAGTCGAGGATAAT ATGGTTAAATGACACCGTCACCGACGCGTTTACCGGCGTGCCGTTATCTT TTCCATGACCTTCCTCTTGCCTTGGGCCAATGGCTTTCGATGCATGCATC GTTACGTTTGATGTTGTTATTGTTTCGTTTTGTTTTTTACACATCCACTT TTTTTCCTTGCTCCTTTCAAGTTCGCGGTGCTGTACGATACCTGGCAGCG AGGTGAAATCAACGGAGGTTCTCGGAAAGGGGATGGCGGCGGGGGCAACG GTGGCAACAGCAGTAACAGAAGCGTCAAGGACAGCATAGAGACGGCGACG GTGAAGGACAAAACGACGGAGATAGAAGACGCAGAGAAGAAGTCGGTGAT CGAGCGGGAGCAGAGGGGACAAGAGTAGTAAACGATGGTAACGCAATTGA AGCAGGAGGAAGAAGAGAAAGAGGAGTGGGACAAGGAGGACGACGGAGGG AGCGTGATGTTTTCGTACGATGTGCTCACTACGTCCGCCGCCCCTCGTCT GACGTGGCTCCACGAGAGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig70464:622..1690+

>mRNA_H-elongata_contig70464.14703.1 ID=mRNA_H-elongata_contig70464.14703.1|Name=mRNA_H-elongata_contig70464.14703.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig70464:622..1690+ (Himanthalia elongata Himel1 dioecious)
ATGTTCAACGCAAGGAGCGAGACGATGTTCAACGCAAGGAGCGAGACGGT
GGCTGAGAAGCCATCATTTCGGCGCCTGATGGGTCGTCGGCACGGCGCGG
TGGCGTTCTCTGGATTCTACGAGTGGAAGAAGGACGAGGTGGGGGAGAGA
CAACCATACTACTTCCGCTTCCGGGACAACAGGCCGATGCTGGTATGTGG
CTGAGAAGCCATCATTTCGGCGCCTGATGGGTCGTCGGCACGGCGCGGTG
GCGTTCTCTGGATTCTACGAGTGGAAGAAGGACGAGGTGGGGGAGAGACA
ACCATACTACTTCCGCTTCCGGGACAACAGGCCGATGCTGGTATAGAG
back to top