mRNA_H-elongata_contig70402.14698.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig70402.14698.1 vs. uniprot
Match: D8LEH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEH4_ECTSI) HSP 1 Score: 197 bits (500), Expect = 3.920e-56 Identity = 96/110 (87.27%), Postives = 102/110 (92.73%), Query Frame = 1
Query: 1 LEELIDAAFRACDVGHAQDHQRVTGAALLTHSGKIYAGCNVESSSVDLCVGAERTTVLKAVSEGETRFRSLAMASDTEQAFPSPDGSGRQFLAEFGEFPIYLVNRDMQAR 330
LEELIDAAFRACD+GHAQ QRVTGAALLT SGKI+AGCNVESSSVDL VGAERTTVLKAVSEGETRFRS+AMASDT+ FPSPDG GRQFLAEFGEFP+YLVNRDMQ +
Sbjct: 196 LEELIDAAFRACDIGHAQGQQRVTGAALLTRSGKIFAGCNVESSSVDLSVGAERTTVLKAVSEGETRFRSMAMASDTDLGFPSPDGPGRQFLAEFGEFPVYLVNRDMQVK 305
BLAST of mRNA_H-elongata_contig70402.14698.1 vs. uniprot
Match: A0A6H5JBA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA5_9PHAE) HSP 1 Score: 136 bits (343), Expect = 5.650e-35 Identity = 65/75 (86.67%), Postives = 70/75 (93.33%), Query Frame = 1
Query: 106 YAGCNVESSSVDLCVGAERTTVLKAVSEGETRFRSLAMASDTEQAFPSPDGSGRQFLAEFGEFPIYLVNRDMQAR 330
+AGCNVESSSVDL VGAERTTVLKAVSEGETRFRS+AMASDT+ FPSPDG GRQFLAEFGEFP+YLVNRDMQ +
Sbjct: 137 FAGCNVESSSVDLSVGAERTTVLKAVSEGETRFRSMAMASDTDLGFPSPDGPGRQFLAEFGEFPVYLVNRDMQVK 211
BLAST of mRNA_H-elongata_contig70402.14698.1 vs. uniprot
Match: A0A835ZKB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKB1_9STRA) HSP 1 Score: 128 bits (321), Expect = 5.090e-32 Identity = 65/114 (57.02%), Postives = 82/114 (71.93%), Query Frame = 1
Query: 1 LEELIDAAFRACDVGHAQDHQRVT---GAALLTHSGKIYAGCNVESS-SVDLCVGAERTTVLKAVSEGETRFRSLAMASDTEQAFPSPDGSGRQFLAEFGEFPIYLVNRDMQAR 330
LEELI+AAF ACD A GAA+LT G++YA C VES+ S +LCV AERT +LKAVS+G++ FR+LA+AS AFP P+G RQFLAEFG+FP+YLVNRD+ +
Sbjct: 664 LEELIEAAFGACDAAAAHGLATAAAPRGAAVLTRGGRVYAACGVESATSTELCVSAERTALLKAVSDGQSAFRALAIASAAGAAFPMPEGGSRQFLAEFGDFPVYLVNRDLLVK 777
BLAST of mRNA_H-elongata_contig70402.14698.1 vs. uniprot
Match: A0A2P6N9D1_9EUKA (Cytidine deaminase n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N9D1_9EUKA) HSP 1 Score: 98.6 bits (244), Expect = 1.400e-23 Identity = 53/106 (50.00%), Postives = 69/106 (65.09%), Query Frame = 1
Query: 1 LEELIDAAFRACDVGHAQDHQRVTGAALLTHSGKIYAGCNVESSSVDLCVGAERTTVLKAVSEGETRFRSLAMASDTEQAFPSPDGSGRQFLAEFGEFPIYLVNRD 318
LE+LID +F A HA + GA LLT SG+ GCNVE+SS L + AERT ++KAVSEG T FR++A++SD SP G+ RQF++EFG IYL+ D
Sbjct: 49 LEKLIDLSFSAKTRAHAPYSKFRVGACLLTQSGEFITGCNVENSSYGLSICAERTALVKAVSEGHTNFRAIAVSSDLVDNHISPCGACRQFISEFGLMDIYLMKPD 154
BLAST of mRNA_H-elongata_contig70402.14698.1 vs. uniprot
Match: A0A813PJB2_ADIRI (Cytidine deaminase n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A813PJB2_ADIRI) HSP 1 Score: 97.4 bits (241), Expect = 1.700e-23 Identity = 55/114 (48.25%), Postives = 68/114 (59.65%), Query Frame = 1
Query: 1 LEELIDAAFRACDVGHAQDHQRVTGAALLTHSGKIYAGCNVESSSVDLCVGAERTTVLKAVSEGETRFRSLAMASDTEQAFPSPDGSGRQFLAEFG-EFPIYLVNRDMQARKQT 339
LEEL AA A + GAALL +GKIY GCN+E++S L AERT ++KAVSEGE F +A+ SD E F P GS RQ LAEFG + +YLVN Q++ T
Sbjct: 14 LEELFRAAHTAKHAAYCPYSNFRVGAALLGSNGKIYMGCNIENASYALATCAERTAIVKAVSEGEKTFTKIAITSDVETGFTGPCGSCRQTLAEFGLDLEVYLVNSKNQSKLYT 127
BLAST of mRNA_H-elongata_contig70402.14698.1 vs. uniprot
Match: A0A816NHP4_9BILA (Cytidine deaminase n=3 Tax=Rotaria TaxID=231623 RepID=A0A816NHP4_9BILA) HSP 1 Score: 95.9 bits (237), Expect = 6.840e-23 Identity = 53/111 (47.75%), Postives = 69/111 (62.16%), Query Frame = 1
Query: 1 LEELIDAAFRACDVGHAQDHQRVTGAALLTHSGKIYAGCNVESSSVDLCVGAERTTVLKAVSEGETRFRSLAMASDTEQAFPSPDGSGRQFLAEFG-EFPIYLVNRDMQAR 330
L+EL A A H Q GAALLT +GKIY GCNVE+++ L AERT V+KAVS+GE F+ +A+ SD E F P GS RQ LAEFG + +YL++ +A+
Sbjct: 14 LQELFRGAHLAKHRAHCPYSQFRVGAALLTSTGKIYTGCNVENAAYPLSTCAERTAVVKAVSDGEKSFKKIAITSDVEVGFTGPCGSCRQTLAEFGLDIDVYLISPKNEAK 124
BLAST of mRNA_H-elongata_contig70402.14698.1 vs. uniprot
Match: A0A818UHH6_9BILA (Cytidine deaminase n=5 Tax=Rotaria TaxID=231623 RepID=A0A818UHH6_9BILA) HSP 1 Score: 95.5 bits (236), Expect = 2.020e-22 Identity = 54/111 (48.65%), Postives = 69/111 (62.16%), Query Frame = 1
Query: 1 LEELIDAAFRACDVGHAQDHQRVTGAALLTHSGKIYAGCNVESSSVDLCVGAERTTVLKAVSEGETRFRSLAMASDTEQAFPSPDGSGRQFLAEFG-EFPIYLVNRDMQAR 330
L+EL A A + + GAALL SGKIY+GCN+E++S L AERT V+KAVSEGE F+ LA+ SD E F P GS RQ LAEFG + +YLVN +++
Sbjct: 14 LQELFREAHLAKHKAYCPYSKFRVGAALLATSGKIYSGCNIENASYALATCAERTAVVKAVSEGEKSFKKLAITSDVELGFTGPCGSCRQTLAEFGLDLDVYLVNAKNESK 124
BLAST of mRNA_H-elongata_contig70402.14698.1 vs. uniprot
Match: A0A7C2Y658_9BACT (Cytidine deaminase n=3 Tax=Mesoaciditogaceae TaxID=1769717 RepID=A0A7C2Y658_9BACT) HSP 1 Score: 93.6 bits (231), Expect = 3.060e-22 Identity = 50/113 (44.25%), Postives = 72/113 (63.72%), Query Frame = 1
Query: 1 LEELIDAAFRACDVGHAQDHQRVTGAALLTHSGKIYAGCNVESSSVDLCVGAERTTVLKAVSEGETRFRSLAMASDTEQAFPSPDGSGRQFLAEFGEFPIYLVNRDMQARKQT 339
++ELI+ A A +A GAA+ T SG++Y GCNVE+SS L + AER + KAVSEGET+FR +A+ +DT++ SP G+ RQ +AEFG+F + L N + K +
Sbjct: 3 VQELINKAKEAKKHAYAPYSNFAVGAAVETESGRVYTGCNVENSSFGLSMCAERIAIFKAVSEGETKFRRIAIVADTKRPV-SPCGACRQVMAEFGDFEVILSNENGDIEKTS 114
BLAST of mRNA_H-elongata_contig70402.14698.1 vs. uniprot
Match: A0A1M5R231_9BACT (Cytidine deaminase n=1 Tax=Thermosipho atlanticus DSM 15807 TaxID=1123380 RepID=A0A1M5R231_9BACT) HSP 1 Score: 93.2 bits (230), Expect = 4.710e-22 Identity = 49/112 (43.75%), Postives = 71/112 (63.39%), Query Frame = 1
Query: 4 EELIDAAFRACDVGHAQDHQRVTGAALLTHSGKIYAGCNVESSSVDLCVGAERTTVLKAVSEGETRFRSLAMASDTEQAFPSPDGSGRQFLAEFGEFPIYLVNRDMQARKQT 339
EELI+ AF+A + +A GAALLT SGKIY G N+E++S L AER + KA+S+GE F ++ + T+ SP G+ RQ +AEFG+F + LV++D + +K T
Sbjct: 7 EELIEKAFQARENAYAPYSNFKVGAALLTKSGKIYTGSNIENASYGLTCCAERVAIFKAISDGEKNFDTIVIVGGTKDPI-SPCGACRQVMAEFGDFNVILVSKDKKIKKMT 117
BLAST of mRNA_H-elongata_contig70402.14698.1 vs. uniprot
Match: UPI0003F0AF8E (probable cytidine deaminase-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0AF8E) HSP 1 Score: 92.4 bits (228), Expect = 1.080e-21 Identity = 47/113 (41.59%), Postives = 69/113 (61.06%), Query Frame = 1
Query: 1 LEELIDAAFRACDVGHAQDHQRVTGAALLTHSGKIYAGCNVESSSVDLCVGAERTTVLKAVSEGETRFRSLAMASDTEQAFPSPDGSGRQFLAEFGEFPIYLVNRDMQARKQT 339
L ELI+ + +A + ++ G AL+T GKI+ GCNVE+ S L + AERTT++KAVSEG +F + +ASD + SP G+ RQF+ EFG++ +YL D K +
Sbjct: 4 LVELIELSHKAKEKAYSPYSNFRVGCALITKDGKIFTGCNVENVSFGLSICAERTTLVKAVSEGYQQFDKMVIASDLKNQVISPCGACRQFMVEFGDYDVYLTKPDKTYEKMS 116 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70402.14698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig70402.14698.1 >prot_H-elongata_contig70402.14698.1 ID=prot_H-elongata_contig70402.14698.1|Name=mRNA_H-elongata_contig70402.14698.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp LEELIDAAFRACDVGHAQDHQRVTGAALLTHSGKIYAGCNVESSSVDLCVback to top mRNA from alignment at H-elongata_contig70402:971..1816- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig70402.14698.1 ID=mRNA_H-elongata_contig70402.14698.1|Name=mRNA_H-elongata_contig70402.14698.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=846bp|location=Sequence derived from alignment at H-elongata_contig70402:971..1816- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig70402:971..1816- >mRNA_H-elongata_contig70402.14698.1 ID=mRNA_H-elongata_contig70402.14698.1|Name=mRNA_H-elongata_contig70402.14698.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig70402:971..1816- (Himanthalia elongata Himel1 dioecious)back to top |