mRNA_H-elongata_contig70384.14695.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70384.14695.1
Unique NamemRNA_H-elongata_contig70384.14695.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig70384.14695.1 vs. uniprot
Match: A0A835Z4H4_9STRA (5'-nucleotidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4H4_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 7.100e-8
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 LLRDENLRFHSMFHKDWGQLFKSGYQDSRFAIQARL 108
            +LR E L+FH +FH  WGQLFKSGYQDSRFA Q  +
Sbjct:  436 ILRQEGLKFHHLFHPAWGQLFKSGYQDSRFAQQVSI 471
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BLAST of mRNA_H-elongata_contig70384.14695.1 vs. uniprot
Match: A0A6H5JY87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY87_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 7.130e-8
Identity = 28/44 (63.64%), Postives = 28/44 (63.64%), Query Frame = 1 
Query:    1 LLRDENLRFHSMFHKDWGQLFKSGYQDSRFAIQARLDDIFCSTS 132
            LLR   L  HS FH DWGQLFKSGYQDSRFA Q      F S S
Sbjct:  920 LLRGNGLMLHSKFHPDWGQLFKSGYQDSRFATQVHCCTGFVSHS 963
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BLAST of mRNA_H-elongata_contig70384.14695.1 vs. uniprot
Match: A0A453LXC7_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453LXC7_AEGTS)

HSP 1 Score: 54.3 bits (129), Expect = 8.150e-8
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 LLRDENLRFHSMFHKDWGQLFKSGYQDSRFAIQA-RLDDIFCSTST-VGLFHP 153
            LLRD  ++ H  FHK WGQL K+GYQ+SRFA Q  R   ++CS  T  GL+ P
Sbjct:   73 LLRDAQMQHHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYCSQVTDFGLYSP 125
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BLAST of mRNA_H-elongata_contig70384.14695.1 vs. uniprot
Match: A0A453LX41_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453LX41_AEGTS)

HSP 1 Score: 53.5 bits (127), Expect = 8.620e-8
Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    1 LLRDENLRFHSMFHKDWGQLFKSGYQDSRFAIQA--RLDDIFCSTST-VGLFHP 153
            LLRD  ++ H  FHK WGQL K+GYQ+SRFA Q   R   ++CS  T  GL+ P
Sbjct:   47 LLRDAQMQHHQKFHKVWGQLMKTGYQNSRFAHQQVERFACLYCSQVTDFGLYSP 100
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BLAST of mRNA_H-elongata_contig70384.14695.1 vs. uniprot
Match: A0A6H5KJ07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ07_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 9.560e-8
Identity = 25/33 (75.76%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    1 LLRDENLRFHSMFHKDWGQLFKSGYQDSRFAIQ 99
            LLR   L  HS FH DWGQLFKSGYQDSRFA Q
Sbjct:  148 LLRGNGLMLHSKFHPDWGQLFKSGYQDSRFATQ 180
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BLAST of mRNA_H-elongata_contig70384.14695.1 vs. uniprot
Match: A0A453LW54_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453LW54_AEGTS)

HSP 1 Score: 54.3 bits (129), Expect = 1.010e-7
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 LLRDENLRFHSMFHKDWGQLFKSGYQDSRFAIQA-RLDDIFCSTST-VGLFHP 153
            LLRD  ++ H  FHK WGQL K+GYQ+SRFA Q  R   ++CS  T  GL+ P
Sbjct:   86 LLRDAQMQHHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYCSQVTDFGLYSP 138
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BLAST of mRNA_H-elongata_contig70384.14695.1 vs. uniprot
Match: D7FMF3_ECTSI (5'-nucleotidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF3_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 1.330e-7
Identity = 25/33 (75.76%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    1 LLRDENLRFHSMFHKDWGQLFKSGYQDSRFAIQ 99
            LLR   L  HS FH DWGQLFKSGYQDSRFA Q
Sbjct:  536 LLRGNGLMLHSKFHPDWGQLFKSGYQDSRFATQ 568
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BLAST of mRNA_H-elongata_contig70384.14695.1 vs. uniprot
Match: A0A453LW69_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453LW69_AEGTS)

HSP 1 Score: 54.3 bits (129), Expect = 2.110e-7
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 LLRDENLRFHSMFHKDWGQLFKSGYQDSRFAIQA-RLDDIFCSTST-VGLFHP 153
            LLRD  ++ H  FHK WGQL K+GYQ+SRFA Q  R   ++CS  T  GL+ P
Sbjct:  147 LLRDAQMQHHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYCSQVTDFGLYSP 199
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BLAST of mRNA_H-elongata_contig70384.14695.1 vs. uniprot
Match: I1GMT4_BRADI (Uncharacterized protein n=24 Tax=Eukaryota TaxID=2759 RepID=I1GMT4_BRADI)

HSP 1 Score: 53.9 bits (128), Expect = 4.650e-7
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 LLRDENLRFHSMFHKDWGQLFKSGYQDSRFAIQA-RLDDIFCSTST-VGLFHP 153
            +LRD  L+ H  FHK WGQL K+GYQ+SRFA Q  R   ++CS  T  GL+ P
Sbjct:  502 VLRDAQLQHHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYCSQVTNFGLYSP 554
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BLAST of mRNA_H-elongata_contig70384.14695.1 vs. uniprot
Match: M8BUT9_AEGTA (Uncharacterized protein n=1 Tax=Aegilops tauschii TaxID=37682 RepID=M8BUT9_AEGTA)

HSP 1 Score: 52.0 bits (123), Expect = 2.230e-6
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    1 LLRDENLRFHSMFHKDWGQLFKSGYQDSRFAIQARLDDI 117
            LLRD  ++ H  FHK WGQL K+GYQ+SRFA Q RL  +
Sbjct:  486 LLRDAQMQHHQKFHKVWGQLMKTGYQNSRFAHQKRLKKV 524
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70384.14695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A835Z4H4_9STRA7.100e-866.675'-nucleotidase n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A6H5JY87_9PHAE7.130e-863.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A453LXC7_AEGTS8.150e-852.83Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
A0A453LX41_AEGTS8.620e-851.85Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
A0A6H5KJ07_9PHAE9.560e-875.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A453LW54_AEGTS1.010e-752.83Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
D7FMF3_ECTSI1.330e-775.765'-nucleotidase n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A453LW69_AEGTS2.110e-752.83Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
I1GMT4_BRADI4.650e-752.83Uncharacterized protein n=24 Tax=Eukaryota TaxID=2... [more]
M8BUT9_AEGTA2.230e-658.97Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70384contigH-elongata_contig70384:5..157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931101.8118606-CDS-H-elongata_contig70384:4..1571622931101.8118606-CDS-H-elongata_contig70384:4..157Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70384 5..157 +
1691679698.653315-CDS-H-elongata_contig70384:4..1571691679698.653315-CDS-H-elongata_contig70384:4..157Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70384 5..157 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70384.14695.1prot_H-elongata_contig70384.14695.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70384 5..157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70384.14695.1

>prot_H-elongata_contig70384.14695.1 ID=prot_H-elongata_contig70384.14695.1|Name=mRNA_H-elongata_contig70384.14695.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
LLRDENLRFHSMFHKDWGQLFKSGYQDSRFAIQARLDDIFCSTSTVGLFH
P
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mRNA from alignment at H-elongata_contig70384:5..157+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70384.14695.1 ID=mRNA_H-elongata_contig70384.14695.1|Name=mRNA_H-elongata_contig70384.14695.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig70384:5..157+ (Himanthalia elongata Himel1 dioecious)
TTGCTGAGGGACGAAAACCTTCGCTTTCACTCGATGTTCCACAAGGACTG
GGGGCAGCTCTTCAAGTCGGGCTACCAGGACTCCCGCTTCGCCATACAGG
CGCGCTTGGACGATATCTTCTGCTCAACAAGTACTGTAGGGCTTTTTCAC
CCC
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Coding sequence (CDS) from alignment at H-elongata_contig70384:5..157+

>mRNA_H-elongata_contig70384.14695.1 ID=mRNA_H-elongata_contig70384.14695.1|Name=mRNA_H-elongata_contig70384.14695.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig70384:5..157+ (Himanthalia elongata Himel1 dioecious)
TTGCTGAGGGACGAAAACCTTCGCTTTCACTCGATGTTCCACAAGGACTG
GGGGCAGCTCTTCAAGTCGGGCTACCAGGACTCCCGCTTCGCCATACAGG
CGCGCTTGGACGATATCTTCTGCTCAACAAGTACTGTAGGGCTTTTTCAC
CCCTTGCTGAGGGACGAAAACCTTCGCTTTCACTCGATGTTCCACAAGGA
CTGGGGGCAGCTCTTCAAGTCGGGCTACCAGGACTCCCGCTTCGCCATAC
AGGCGCGCTTGGACGATATCTTCTGCTCAACAAGTACTGTAGGGCTTTTT
CACCCC
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