mRNA_H-elongata_contig70381.14694.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70381.14694.1
Unique NamemRNA_H-elongata_contig70381.14694.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig70381.14694.1 vs. uniprot
Match: A0A388KR43_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KR43_CHABU)

HSP 1 Score: 60.8 bits (146), Expect = 1.100e-8
Identity = 32/91 (35.16%), Postives = 47/91 (51.65%), Query Frame = 1 
Query:   16 CGAHSIDLLTKDICGMPWAKATVAAVKECIKFIKHHQKTLALYKTKSAGRGLLLPNDIRFGTAFIMCERFKA----------VSKTLYVVL 258
            C AH   LL +DI  + W K TV      +KFI++H  T +L  +      LL P ++RFG+ ++M ERF+           V + LYV+L
Sbjct:  915 CAAHCCSLLLRDISKLDWIKGTVNRSHTIVKFIRNHHCTHSLMMSLDDSLSLLRPTEVRFGSVYMMMERFEGWWPELKKVVEVMEPLYVLL 1005
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70381.14694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A388KR43_CHABU1.100e-835.16Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70381contigH-elongata_contig70381:2712..3002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size291
Cds size291
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931101.7620566-CDS-H-elongata_contig70381:2711..30021622931101.7620566-CDS-H-elongata_contig70381:2711..3002Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70381 2712..3002 +
1691679698.6356492-CDS-H-elongata_contig70381:2711..30021691679698.6356492-CDS-H-elongata_contig70381:2711..3002Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70381 2712..3002 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70381.14694.1prot_H-elongata_contig70381.14694.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70381 2712..3002 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70381.14694.1

>prot_H-elongata_contig70381.14694.1 ID=prot_H-elongata_contig70381.14694.1|Name=mRNA_H-elongata_contig70381.14694.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
MTGFLCGAHSIDLLTKDICGMPWAKATVAAVKECIKFIKHHQKTLALYKT
KSAGRGLLLPNDIRFGTAFIMCERFKAVSKTLYVVLFGEWVTVDSW*
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mRNA from alignment at H-elongata_contig70381:2712..3002+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70381.14694.1 ID=mRNA_H-elongata_contig70381.14694.1|Name=mRNA_H-elongata_contig70381.14694.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=291bp|location=Sequence derived from alignment at H-elongata_contig70381:2712..3002+ (Himanthalia elongata Himel1 dioecious)
ATGACCGGTTTCTTGTGTGGGGCACACAGCATCGATCTCTTGACCAAGGA
CATCTGCGGCATGCCCTGGGCAAAGGCGACGGTAGCAGCAGTGAAGGAAT
GCATCAAGTTCATCAAGCACCACCAGAAGACGCTGGCGCTGTACAAGACC
AAGAGCGCTGGTCGGGGTTTACTTCTTCCCAACGACATCCGGTTCGGCAC
CGCTTTCATCATGTGCGAACGGTTCAAGGCGGTGAGTAAAACCCTGTACG
TTGTACTTTTTGGCGAGTGGGTGACAGTTGATAGTTGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig70381:2712..3002+

>mRNA_H-elongata_contig70381.14694.1 ID=mRNA_H-elongata_contig70381.14694.1|Name=mRNA_H-elongata_contig70381.14694.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig70381:2712..3002+ (Himanthalia elongata Himel1 dioecious)
ATGACCGGTTTCTTGTGTGGGGCACACAGCATCGATCTCTTGACCAAGGA
CATCTGCGGCATGCCCTGGGCAAAGGCGACGGTAGCAGCAGTGAAGGAAT
GCATCAAGTTCATCAAGCACCACCAGAAGACGCTGGCGCTGTACAAGACC
AAGAGCGCTGGTCGGGGTTTACTTCTTCCCAACGACATCCGGTTCGGCAC
CGCTTTCATCATGTGCGAACGGTTCAAGGCGGTGAGTAAAACCCTGTACG
TTGTACTTTTTGGCGAGTGGGTGACAGTTGATAGTTGGTAGATGACCGGT
TTCTTGTGTGGGGCACACAGCATCGATCTCTTGACCAAGGACATCTGCGG
CATGCCCTGGGCAAAGGCGACGGTAGCAGCAGTGAAGGAATGCATCAAGT
TCATCAAGCACCACCAGAAGACGCTGGCGCTGTACAAGACCAAGAGCGCT
GGTCGGGGTTTACTTCTTCCCAACGACATCCGGTTCGGCACCGCTTTCAT
CATGTGCGAACGGTTCAAGGCGGTGAGTAAAACCCTGTACGTTGTACTTT
TTGGCGAGTGGGTGACAGTTGATAGTTGGTAG
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