mRNA_H-elongata_contig70353.14691.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70353.14691.1
Unique NamemRNA_H-elongata_contig70353.14691.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70353.14691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70353contigH-elongata_contig70353:2018..2920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size702
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70353.14691.1prot_H-elongata_contig70353.14691.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70353 2019..2699 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931101.4928105-UTR-H-elongata_contig70353:2017..20181622931101.4928105-UTR-H-elongata_contig70353:2017..2018Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70353 2018..2018 +
1691679698.5185134-UTR-H-elongata_contig70353:2017..20181691679698.5185134-UTR-H-elongata_contig70353:2017..2018Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70353 2018..2018 +
1622931101.569035-UTR-H-elongata_contig70353:2699..29201622931101.569035-UTR-H-elongata_contig70353:2699..2920Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70353 2700..2920 +
1691679698.568907-UTR-H-elongata_contig70353:2699..29201691679698.568907-UTR-H-elongata_contig70353:2699..2920Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70353 2700..2920 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931101.515097-CDS-H-elongata_contig70353:2018..21851622931101.515097-CDS-H-elongata_contig70353:2018..2185Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70353 2019..2185 +
1691679698.5278912-CDS-H-elongata_contig70353:2018..21851691679698.5278912-CDS-H-elongata_contig70353:2018..2185Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70353 2019..2185 +
1622931101.5328493-CDS-H-elongata_contig70353:2228..24581622931101.5328493-CDS-H-elongata_contig70353:2228..2458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70353 2229..2458 +
1691679698.5370896-CDS-H-elongata_contig70353:2228..24581691679698.5370896-CDS-H-elongata_contig70353:2228..2458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70353 2229..2458 +
1622931101.5515842-CDS-H-elongata_contig70353:2616..26991622931101.5515842-CDS-H-elongata_contig70353:2616..2699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70353 2617..2699 +
1691679698.5549963-CDS-H-elongata_contig70353:2616..26991691679698.5549963-CDS-H-elongata_contig70353:2616..2699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70353 2617..2699 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70353.14691.1

>prot_H-elongata_contig70353.14691.1 ID=prot_H-elongata_contig70353.14691.1|Name=mRNA_H-elongata_contig70353.14691.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp
MAFTEPDVGSALMRQARGDRWQLQPDVEDSLGLEPGAISAYYGAMHLGPG
GKTNRKKEENYSAGVRCGGSPLLARTAPVPIWICGISFTSSTLSRMVRKG
MESRTRTRQIGCWKQLRRSCPWRSHRPTTTSNGSSGSPIHHSKASSPTTA
ADTSSVFPR*
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mRNA from alignment at H-elongata_contig70353:2018..2920+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70353.14691.1 ID=mRNA_H-elongata_contig70353.14691.1|Name=mRNA_H-elongata_contig70353.14691.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=903bp|location=Sequence derived from alignment at H-elongata_contig70353:2018..2920+ (Himanthalia elongata Himel1 dioecious)
TATGGCCTTCACTGAACCGGATGTAGGGAGCGCCCTCATGCGTCAGGCGA
GAGGAGACCGGTGGCAACTTCAACCTGACGTTGAAGATAGCCTGGGGTTG
GAACCCGGGGCCATCAGCGCTTACTACGGCGCTATGCATTTGGGCCCTGG
AGGCAAGACAAACAGGAAGTCAACTCTGAAGAAGCTCACAGCAGCTGGCG
TGTACCGCAAGGAAGGAAGAAAACTATTCGGCGGGGGTAAGGTGTGGTGG
ATCGCCTTTGCTGGCGCGGACCGCTCCTGTCCCTATTTGGATTTGCGGGA
TCTCGTTCACAAGTTCGACACTATCAAGGATGGTGCGCAAAGGGATGGAG
AGCCGGACGAGGACCCGGCAGATAGGGTGCTGGAAACAACTTCGGAGATC
ATGTCCCTGGAGAAGTCATCGGCCAACAACTACCTCAAACGGTTAGTGCA
CAAGTGTCTGTTTGGACAGTATCGTTTTGTGGACCACGTACGATCAAAAA
TTATTTGGCGGCGCGATATCAAGGCAGTGCTATCTTGCTGTTGGCTCATA
CTTCATTTATTACCGTGTTTTGCTTTATTGCTGGATTGAACTGTTACAGG
TTCGAGTGGCAGTCCGATCCACCATTCAAAAGCATCATCTCCAACAACAG
CTGCGGACACTTCCTCAGTATTCCCGAGATAAGTTCATGGCTGGGCTTCA
AGTGCGCTGAGTTGCAGAACTTTCTGTTGCGCAAAACCTGTGACGAGTTC
TTCTGGCCCGCGTTCGGCGTTGAGAAGAGGGCGTACGGGAGGGAGCACAT
ACCGCGGTTCTGTCTCCAAGGAATCGGTTACATCCCCCTGTCCGGTCTGA
GTGAACGACAGCGCATGGAGATCGCCAAGCCAGCAAAGGACGCCCTCTAC
CTG
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Coding sequence (CDS) from alignment at H-elongata_contig70353:2018..2920+

>mRNA_H-elongata_contig70353.14691.1 ID=mRNA_H-elongata_contig70353.14691.1|Name=mRNA_H-elongata_contig70353.14691.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at H-elongata_contig70353:2018..2920+ (Himanthalia elongata Himel1 dioecious)
ATGGCCTTCACTGAACCGGATGTAGGGAGCGCCCTCATGCGTCAGGCGAG
AGGAGACCGGTGGCAACTTCAACCTGACGTTGAAGATAGCCTGGGGTTGG
AACCCGGGGCCATCAGCGCTTACTACGGCGCTATGCATTTGGGCCCTGGA
GGCAAGACAAACAGGAAATGGCCTTCACTGAACCGGATGTAGGGAGCGCC
CTCATGCGTCAGGCGAGAGGAGACCGGTGGCAACTTCAACCTGACGTTGA
AGATAGCCTGGGGTTGGAACCCGGGGCCATCAGCGCTTACTACGGCGCTA
TGCATTTGGGCCCTGGAGGCAAGACAAACAGGAAGAAGGAAGAAAACTAT
TCGGCGGGGGTAAGGTGTGGTGGATCGCCTTTGCTGGCGCGGACCGCTCC
TGTCCCTATTTGGATTTGCGGGATCTCGTTCACAAGTTCGACACTATCAA
GGATGGTGCGCAAAGGGATGGAGAGCCGGACGAGGACCCGGCAGATAGGG
TGCTGGAAACAACTTCGGAGATCATGTCCCTGGAGAAGTCATCGGCCAAC
AACTACCTCAAACGGAAGGAAGAAAACTATTCGGCGGGGGTAAGGTGTGG
TGGATCGCCTTTGCTGGCGCGGACCGCTCCTGTCCCTATTTGGATTTGCG
GGATCTCGTTCACAAGTTCGACACTATCAAGGATGGTGCGCAAAGGGATG
GAGAGCCGGACGAGGACCCGGCAGATAGGGTGCTGGAAACAACTTCGGAG
ATCATGTCCCTGGAGAAGTCATCGGCCAACAACTACCTCAAACGGTTCGA
GTGGCAGTCCGATCCACCATTCAAAAGCATCATCTCCAACAACAGCTGCG
GACACTTCCTCAGTATTCCCGAGATAAGTTCGAGTGGCAGTCCGATCCAC
CATTCAAAAGCATCATCTCCAACAACAGCTGCGGACACTTCCTCAGTATT
CCCGAGATAA
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