mRNA_H-elongata_contig70319.14689.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70319.14689.1
Unique NamemRNA_H-elongata_contig70319.14689.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig70319.14689.1 vs. uniprot
Match: D8LMN1_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMN1_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 2.280e-43
Identity = 76/84 (90.48%), Postives = 80/84 (95.24%), Query Frame = 1
Query:    1 KVMHKLVHPHIVGYLGAELQDSQRKLCIFQEWVPAGSLHSLLDQFGSLSDAMTRKYTGQVVNGLTYLHANRVIHRDVKSKNILV 252
            +VMHKLVHPHIVGYLGAELQDS+RKLCIFQEWVPAGSLHSLL QFG+LSDAMTRKYT QV+ GL YLHANRVIHRDVKSKNILV
Sbjct:  352 QVMHKLVHPHIVGYLGAELQDSKRKLCIFQEWVPAGSLHSLLGQFGALSDAMTRKYTRQVLEGLVYLHANRVIHRDVKSKNILV 435          
BLAST of mRNA_H-elongata_contig70319.14689.1 vs. uniprot
Match: A0A835YLD7_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLD7_9STRA)

HSP 1 Score: 109 bits (272), Expect = 8.020e-27
Identity = 48/83 (57.83%), Postives = 64/83 (77.11%), Query Frame = 1
Query:    4 VMHKLVHPHIVGYLGAELQDSQRKLCIFQEWVPAGSLHSLLDQFGSLSDAMTRKYTGQVVNGLTYLHANRVIHRDVKSKNILV 252
            +M +  HP+IV YLGAE+++   +LCIFQEWVP GS+ SLL +FG  S+ MTR+YT Q + GLTYLH ++V+HRD+K  NILV
Sbjct:  140 LMRQFSHPNIVSYLGAEIREEDGQLCIFQEWVPGGSVSSLLRRFGPFSEDMTRRYTRQALRGLTYLHQHQVVHRDIKGSNILV 222          
BLAST of mRNA_H-elongata_contig70319.14689.1 vs. uniprot
Match: A0A835YLS7_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLS7_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.600e-25
Identity = 46/83 (55.42%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    4 VMHKLVHPHIVGYLGAELQDSQRKLCIFQEWVPAGSLHSLLDQFGSLSDAMTRKYTGQVVNGLTYLHANRVIHRDVKSKNILV 252
            +M    HP+IV YLGAE+++   +LCIFQEWVP GS+ SLL +FG  S+ MTR YT Q + GL YLH++ V+HRD+   NILV
Sbjct:   56 LMRAFSHPNIVSYLGAEIREEHDQLCIFQEWVPGGSVSSLLQRFGPFSEDMTRGYTRQALQGLAYLHSHHVVHRDINGSNILV 138          
BLAST of mRNA_H-elongata_contig70319.14689.1 vs. uniprot
Match: A0A7S1XYM9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYM9_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.520e-23
Identity = 48/84 (57.14%), Postives = 60/84 (71.43%), Query Frame = 1
Query:    1 KVMHKLVHPHIVGYLGAELQDSQRKLCIFQEWVPAGSLHSLLDQFGSLSDAMTRKYTGQVVNGLTYLHANRVIHRDVKSKNILV 252
            ++M  L HP+IV YLG  +     K+ IFQEWVP GS+ SLL +FG  S+ M + YT QV+NGLTYLHAN +IHRD+K  NILV
Sbjct:  234 ELMKMLDHPNIVAYLGTAVDAMAGKVYIFQEWVPGGSISSLLKRFGPFSERMCQSYTRQVLNGLTYLHANSIIHRDIKGANILV 317          
BLAST of mRNA_H-elongata_contig70319.14689.1 vs. uniprot
Match: A0A7S3UV54_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UV54_HETAK)

HSP 1 Score: 102 bits (253), Expect = 1.590e-23
Identity = 45/83 (54.22%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    4 VMHKLVHPHIVGYLGAELQDSQRKLCIFQEWVPAGSLHSLLDQFGSLSDAMTRKYTGQVVNGLTYLHANRVIHRDVKSKNILV 252
            +M  L HP+IV Y GAE+ + +  LCIFQ+WVP GS+ SLL +FG   + + RKYT Q++ GL YLH N++IHRD+K  NILV
Sbjct:  141 LMRSLRHPNIVSYFGAEVSEEECSLCIFQQWVPGGSVASLLKKFGPFREHVVRKYTKQLLKGLRYLHNNKIIHRDIKGANILV 223          
BLAST of mRNA_H-elongata_contig70319.14689.1 vs. uniprot
Match: F0YDL8_AURAN (Protein kinase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDL8_AURAN)

HSP 1 Score: 93.6 bits (231), Expect = 6.820e-22
Identity = 44/85 (51.76%), Postives = 61/85 (71.76%), Query Frame = 1
Query:    1 KVMHKLVHPHIVGYLGAELQDSQRKLCIFQEWVPAGSLHSLLDQFGS-LSDAMTRKYTGQVVNGLTYLHANRVIHRDVKSKNILV 252
            +VM  L H +IV YLGAE++++ RKL IFQEWVP GSL +++  FG  L D + R+Y    + GL YLH +RV+HRDVK +N+L+
Sbjct:   56 EVMSSLRHENIVEYLGAEIEEADRKLHIFQEWVPGGSLSAVVRTFGGRLDDDVNRRYLEHCLRGLVYLHEHRVVHRDVKGENVLI 140          
BLAST of mRNA_H-elongata_contig70319.14689.1 vs. uniprot
Match: A0A7S1FWX6_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FWX6_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.690e-21
Identity = 45/83 (54.22%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    4 VMHKLVHPHIVGYLGAELQDSQRKLCIFQEWVPAGSLHSLLDQFGSLSDAMTRKYTGQVVNGLTYLHANRVIHRDVKSKNILV 252
            +M +  HP+IV YLGAE+ D +  L IFQEWVP GS+  LL +FG     + R Y  QV+ GL YLHAN +IHRD+K  NILV
Sbjct:  193 LMREFDHPNIVRYLGAEVDDEEGTLYIFQEWVPGGSVADLLKKFGGFGYGVVRNYLEQVLKGLAYLHANNIIHRDIKGGNILV 275          
BLAST of mRNA_H-elongata_contig70319.14689.1 vs. uniprot
Match: D7G097_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G097_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 2.680e-21
Identity = 45/84 (53.57%), Postives = 60/84 (71.43%), Query Frame = 1
Query:    1 KVMHKLVHPHIVGYLGAELQDSQRKLCIFQEWVPAGSLHSLLDQFGSLSDAMTRKYTGQVVNGLTYLHANRVIHRDVKSKNILV 252
            ++M +L HP+IV YLGAE+ D ++ + IFQEWVP GS+ +LL  FG  SD     YT Q++ GL YLH+ RVIHRD+K  NIL+
Sbjct:  106 ELMRQLTHPNIVCYLGAEVNDKEKTISIFQEWVP-GSVTTLLVNFGPFSDRRIADYTKQILQGLVYLHSERVIHRDIKGGNILI 188          
BLAST of mRNA_H-elongata_contig70319.14689.1 vs. uniprot
Match: A0A250WQ98_9CHLO (Protein kinase domain-containing protein (Fragment) n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WQ98_9CHLO)

HSP 1 Score: 90.1 bits (222), Expect = 3.690e-21
Identity = 39/80 (48.75%), Postives = 56/80 (70.00%), Query Frame = 1
Query:   13 KLVHPHIVGYLGAELQDSQRKLCIFQEWVPAGSLHSLLDQFGSLSDAMTRKYTGQVVNGLTYLHANRVIHRDVKSKNILV 252
            KL H H+VGY+ ++L +    L IF E+VP GS+ S+L++FG  S+ + R YT Q++ GL YLH  R++HRDVK  N+LV
Sbjct:   48 KLSHKHVVGYIDSQLDEKTSTLYIFLEYVPGGSICSMLERFGKFSEELVRNYTRQLLLGLEYLHGKRIVHRDVKGGNVLV 127          
BLAST of mRNA_H-elongata_contig70319.14689.1 vs. uniprot
Match: F0XVW6_AURAN (Protein kinase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVW6_AURAN)

HSP 1 Score: 92.4 bits (228), Expect = 4.200e-21
Identity = 42/85 (49.41%), Postives = 62/85 (72.94%), Query Frame = 1
Query:    1 KVMHKLVHPHIVGYLGAELQDSQRKLCIFQEWVPAGSLHSLLDQFG-SLSDAMTRKYTGQVVNGLTYLHANRVIHRDVKSKNILV 252
            ++M KL H +IV YLGAEL +    L I+QEWVP GS+ SLL +FG + +D++T++Y  + + GL YLH +R++HRD+K  N+LV
Sbjct:   95 QLMAKLSHANIVEYLGAELDEGAGLLSIYQEWVPGGSIDSLLAKFGGTFADSITKRYAEETLKGLAYLHEHRIVHRDIKGGNVLV 179          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70319.14689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMN1_ECTSI2.280e-4390.48Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A835YLD7_9STRA8.020e-2757.83Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835YLS7_9STRA1.600e-2555.42Kinase-like domain-containing protein (Fragment) n... [more]
A0A7S1XYM9_9STRA1.520e-2357.14Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3UV54_HETAK1.590e-2354.22Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
F0YDL8_AURAN6.820e-2251.76Protein kinase domain-containing protein (Fragment... [more]
A0A7S1FWX6_9STRA1.690e-2154.22Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
D7G097_ECTSI2.680e-2153.57Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A250WQ98_9CHLO3.690e-2148.75Protein kinase domain-containing protein (Fragment... [more]
F0XVW6_AURAN4.200e-2149.41Protein kinase domain-containing protein (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70319contigH-elongata_contig70319:793..1044 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.3
Seed ortholog evalue1.5e-36
Seed eggNOG ortholog2880.D8LMN1
KEGG koko:K11229
KEGG Pathwayko04011,ko04139,map04011,map04139
EggNOG free text desc.MAP kinase kinase kinase activity
EggNOG OGsKOG0198@1,KOG0198@2759
EC2.7.11.25
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons1
Model size252
Cds size246
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931101.319352-CDS-H-elongata_contig70319:792..10381622931101.319352-CDS-H-elongata_contig70319:792..1038Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70319 793..1038 -
1691679698.4386415-CDS-H-elongata_contig70319:792..10381691679698.4386415-CDS-H-elongata_contig70319:792..1038Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70319 793..1038 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931101.3354251-UTR-H-elongata_contig70319:1038..10441622931101.3354251-UTR-H-elongata_contig70319:1038..1044Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70319 1039..1044 -
1691679698.4492073-UTR-H-elongata_contig70319:1038..10441691679698.4492073-UTR-H-elongata_contig70319:1038..1044Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70319 1039..1044 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70319.14689.1prot_H-elongata_contig70319.14689.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70319 793..1038 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70319.14689.1

>prot_H-elongata_contig70319.14689.1 ID=prot_H-elongata_contig70319.14689.1|Name=mRNA_H-elongata_contig70319.14689.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
MHKLVHPHIVGYLGAELQDSQRKLCIFQEWVPAGSLHSLLDQFGSLSDAM
TRKYTGQVVNGLTYLHANRVIHRDVKSKNILV
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mRNA from alignment at H-elongata_contig70319:793..1044-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70319.14689.1 ID=mRNA_H-elongata_contig70319.14689.1|Name=mRNA_H-elongata_contig70319.14689.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=252bp|location=Sequence derived from alignment at H-elongata_contig70319:793..1044- (Himanthalia elongata Himel1 dioecious)
AAGGTGATGCACAAGCTCGTTCATCCCCATATCGTGGGCTATCTGGGGGC TGAGCTGCAGGATAGCCAGCGAAAGCTGTGCATCTTTCAAGAGTGGGTCC CCGCTGGGTCTTTGCACTCTCTACTGGACCAGTTTGGCTCGCTGAGCGAC GCGATGACCCGCAAGTACACGGGGCAAGTGGTCAATGGGCTGACCTACCT GCACGCCAATCGTGTGATTCACCGAGACGTGAAGTCGAAAAACATCCTGG TG
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Coding sequence (CDS) from alignment at H-elongata_contig70319:793..1044-

>mRNA_H-elongata_contig70319.14689.1 ID=mRNA_H-elongata_contig70319.14689.1|Name=mRNA_H-elongata_contig70319.14689.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig70319:793..1044- (Himanthalia elongata Himel1 dioecious)
ATGCACAAGCTCGTTCATCCCCATATCGTGGGCTATCTGGGGGCTGAGCT
GCAGGATAGCCAGCGAAAGCTGTGCATCTTTCAAGAGTGGGTCCCCGCTG
GGTCTTTGCACTCTCTACTGGACCAGTTTGGCTCGCTGAGCGACGCGATG
ACCCGCAAGTACACGGGGCAAGTGGTCAATGGGCTGACCTACCTGCACGC
CAATCGTGTGATTCACCGAGACGTGAAGTCGAAAAACATCCTGGTGATGC
ACAAGCTCGTTCATCCCCATATCGTGGGCTATCTGGGGGCTGAGCTGCAG
GATAGCCAGCGAAAGCTGTGCATCTTTCAAGAGTGGGTCCCCGCTGGGTC
TTTGCACTCTCTACTGGACCAGTTTGGCTCGCTGAGCGACGCGATGACCC
GCAAGTACACGGGGCAAGTGGTCAATGGGCTGACCTACCTGCACGCCAAT
CGTGTGATTCACCGAGACGTGAAGTCGAAAAACATCCTGGTG
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