mRNA_H-elongata_contig703.14688.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig703.14688.1
Unique NamemRNA_H-elongata_contig703.14688.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig703.14688.1 vs. uniprot
Match: D8LUC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUC5_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 3.020e-35
Identity = 64/117 (54.70%), Postives = 76/117 (64.96%), Query Frame = 1 
Query:   13 QRRALLEIFGVEEDEGALALFLGLILVGLTVLACCYCKVYDPIKLSCIRCWKRC-NKGEEEEQAPPPEQPSTSEREHWYLNKTLKIDRKDRDELGPVADVKGLQGGWYGARNGGFDV 360
            +RR L ++FGV ED+GA  L  GLI+ GLT  ACCYCKVYDP++   I+ + RC  K                 R HWYLN+TL+IDR DRDELGP     GL+GGWYGARNGGFDV
Sbjct:    9 ERRILFDVFGVSEDDGAYVLIAGLIMGGLTFTACCYCKVYDPLRNWSIKTYNRCCKKXXXXXXXXXXXXXXXXXRRHWYLNQTLQIDRADRDELGPQGARTGLKGGWYGARNGGFDV 125
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig703.14688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUC5_ECTSI3.020e-3554.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig703contigH-elongata_contig703:17138..17869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_004460.1
Exons2
Model size363
Cds size363
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931101.258182-CDS-H-elongata_contig703:17137..172691622931101.258182-CDS-H-elongata_contig703:17137..17269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig703 17138..17269 -
1691679698.4204261-CDS-H-elongata_contig703:17137..172691691679698.4204261-CDS-H-elongata_contig703:17137..17269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig703 17138..17269 -
1622931101.2748938-CDS-H-elongata_contig703:17638..178691622931101.2748938-CDS-H-elongata_contig703:17638..17869Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig703 17639..17869 -
1691679698.4290385-CDS-H-elongata_contig703:17638..178691691679698.4290385-CDS-H-elongata_contig703:17638..17869Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig703 17639..17869 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig703.14688.1prot_H-elongata_contig703.14688.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig703 17138..17869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig703.14688.1

>prot_H-elongata_contig703.14688.1 ID=prot_H-elongata_contig703.14688.1|Name=mRNA_H-elongata_contig703.14688.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
MEAGQRRALLEIFGVEEDEGALALFLGLILVGLTVLACCYCKVYDPIKLS
CIRCWKRCNKGEEEEQAPPPEQPSTSEREHWYLNKTLKIDRKDRDELGPV
ADVKGLQGGWYGARNGGFDV*
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mRNA from alignment at H-elongata_contig703:17138..17869-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig703.14688.1 ID=mRNA_H-elongata_contig703.14688.1|Name=mRNA_H-elongata_contig703.14688.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=732bp|location=Sequence derived from alignment at H-elongata_contig703:17138..17869- (Himanthalia elongata Himel1 dioecious)
ATGGAAGCTGGGCAGAGGCGCGCGCTCCTCGAAATCTTTGGTGTGGAAGA
GGATGAAGGTGCGCTCGCCCTTTTCCTTGGCCTGATCCTGGTCGGGCTGA
CGGTCCTGGCCTGCTGCTACTGCAAGGTTTACGACCCCATAAAGCTTTCT
TGCATACGTTGCTGGAAGCGGTGTAACAAGGGGGAAGAAGAAGAGCAAGC
TCCGCCGCCAGAACAACCCTCAACATCAGAGGTGCGAAGTCTCGCTTCGC
TCCAGTGCGCTATCGGATACAAAAATACAGTTATTCGTGTATCTACTTGA
ATACGTGGGAAGGGGGAGGGGAGCTCGTACACAACGAGGGCTAGAGTGAA
CGTTCGCGACTGACGTGAGAATTGCGAGTGGGTACCATAGACGGAAAATA
AGTTGGCTGGCGTGGCTTTAAACCAGCGATGGCGCTTCATCTTGACTAGG
ACGATACCCCATTATGCCTCTCTCCCTCCATTTCCCTCCCTCTCCCTCTT
TCTCTCTCTGTTTCTTTCGCTCGCTTCTTAAAGCCTTTCTTTGCTATGAT
TTCCTCATTAACCACCGCCTCGCTACCCATGCCTTCGTCTCCGCACCCAG
CGTGAGCACTGGTACCTGAATAAAACGTTGAAGATCGATCGGAAGGATCG
AGACGAGCTTGGTCCCGTGGCCGACGTGAAGGGGCTGCAGGGCGGGTGGT
ACGGCGCGCGAAATGGCGGTTTCGACGTATAA
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Coding sequence (CDS) from alignment at H-elongata_contig703:17138..17869-

>mRNA_H-elongata_contig703.14688.1 ID=mRNA_H-elongata_contig703.14688.1|Name=mRNA_H-elongata_contig703.14688.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig703:17138..17869- (Himanthalia elongata Himel1 dioecious)
ATGGAAGCTGGGCAGAGGCGCGCGCTCCTCGAAATCTTTGGTGTGGAAGA
GGATGAAGGTGCGCTCGCCCTTTTCCTTGGCCTGATCCTGGTCGGGCTGA
CGGTCCTGGCCTGCTGCTACTGCAAGGTTTACGACCCCATAAAGCTTTCT
TGCATACGTTGCTGGAAGCGGTGTAACAAGGGGGAAGAAGAAGAGCAAGC
TCCGCCGCCAGAACAACCCTCAACATCAGAGATGGAAGCTGGGCAGAGGC
GCGCGCTCCTCGAAATCTTTGGTGTGGAAGAGGATGAAGGTGCGCTCGCC
CTTTTCCTTGGCCTGATCCTGGTCGGGCTGACGGTCCTGGCCTGCTGCTA
CTGCAAGGTTTACGACCCCATAAAGCTTTCTTGCATACGTTGCTGGAAGC
GGTGTAACAAGGGGGAAGAAGAAGAGCAAGCTCCGCCGCCAGAACAACCC
TCAACATCAGAGCGTGAGCACTGGTACCTGAATAAAACGTTGAAGATCGA
TCGGAAGGATCGAGACGAGCTTGGTCCCGTGGCCGACGTGAAGGGGCTGC
AGGGCGGGTGGTACGGCGCGCGAAATGGCGGTTTCGACGTATAACGTGAG
CACTGGTACCTGAATAAAACGTTGAAGATCGATCGGAAGGATCGAGACGA
GCTTGGTCCCGTGGCCGACGTGAAGGGGCTGCAGGGCGGGTGGTACGGCG
CGCGAAATGGCGGTTTCGACGTATAA
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