mRNA_H-elongata_contig70294.14687.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70294.14687.1
Unique NamemRNA_H-elongata_contig70294.14687.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig70294.14687.1 vs. uniprot
Match: D8LM12_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM12_ECTSI)

HSP 1 Score: 302 bits (774), Expect = 1.960e-94
Identity = 201/384 (52.34%), Postives = 234/384 (60.94%), Query Frame = 1 
Query:    1 QVFWLILESTAGNEDSRGYVRLPSVALYALALHAVGHLLLFRCHC--RGVDHHAMEFLLDLATDVVGFAWINLAEEMLAQVFLVTARTAFLYSVLALAASLGAMEIGSCVRRLLKWPPEFDGTANEFDAGSFALPTSWLVTQAVHIALYGFFYRTSVVGGQDGRG---DRDEKVDVRLAASLFLLVYAMLCSAIAARLIGGTVAAASVFTDPDVGIDGIGGESSLAQGEGAESVDRSDLVIRTVEAGGPFRAALAYDM-----------ITSSSSRSQPRDQELPKRERGLDAPLEGQGATDHSGTQRATMGDVQAMPSPEWEDGETSGGNGGAAASSEARPETTATLFAAAVGAMEASRTRREYLRRGLKAYVRITVGMMVGW 1104
            Q FWLILE+TAGNEDSRGYVRL SVA YALALHA GHLLL R     R + HHA+EFLLDL TDVVGFAWIN+AEEMLAQVF V A+T  +Y+ LA AASLGAME+GS  R LL WP  F+ TAN+FDAGSFALPTSWLVTQ VHI LYGFFYRT+  GGQ GRG   + D+ VDVRLAASLFLL YA+LCSA+A R+IGGTVAA                  + +   G  +  RSDLVIR + + G   AA A D            + +SS+ S    +    RE G D                A +G     PS   + G+  G  G A  +              A G  +A   RR+ LRRGLKAY+R+TVGMMVGW
Sbjct:   37 QAFWLILEATAGNEDSRGYVRLSSVACYALALHAGGHLLLHRYSSGRRKLSHHALEFLLDLVTDVVGFAWINVAEEMLAQVFEVRAKTTLVYAALAFAASLGAMELGSLARSLLDWPVGFEETANQFDAGSFALPTSWLVTQGVHIGLYGFFYRTA--GGQGGRGGDGEEDDVVDVRLAASLFLLAYALLCSALATRVIGGTVAAXXXXXXXXXXXXXXXXXLTRSN-SGGSTGSRSDLVIRAISSYG-VTAAQASDAAXXXXXXXXGDVEASSTPSCGGGRNTSYREGGGDV---------------ADVG-----PSNSTKVGDGGGERGAAPLAXXXXXXXXXXXXXXAAGGEDA---RRDSLRRGLKAYMRLTVGMMVGW 393
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70294.14687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LM12_ECTSI1.960e-9452.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70294contigH-elongata_contig70294:841..3221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_002440.1
Exons3
Model size1104
Cds size1104
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70294.14687.1prot_H-elongata_contig70294.14687.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70294 841..3221 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931101.1692417-CDS-H-elongata_contig70294:840..10741622931101.1692417-CDS-H-elongata_contig70294:840..1074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70294 841..1074 +
1691679698.3937602-CDS-H-elongata_contig70294:840..10741691679698.3937602-CDS-H-elongata_contig70294:840..1074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70294 841..1074 +
1622931101.1918836-CDS-H-elongata_contig70294:2086..22561622931101.1918836-CDS-H-elongata_contig70294:2086..2256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70294 2087..2256 +
1691679698.4035966-CDS-H-elongata_contig70294:2086..22561691679698.4035966-CDS-H-elongata_contig70294:2086..2256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70294 2087..2256 +
1622931101.2093747-CDS-H-elongata_contig70294:2521..32211622931101.2093747-CDS-H-elongata_contig70294:2521..3221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70294 2522..3221 +
1691679698.4115617-CDS-H-elongata_contig70294:2521..32211691679698.4115617-CDS-H-elongata_contig70294:2521..3221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70294 2522..3221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70294.14687.1

>prot_H-elongata_contig70294.14687.1 ID=prot_H-elongata_contig70294.14687.1|Name=mRNA_H-elongata_contig70294.14687.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=368bp
QVFWLILESTAGNEDSRGYVRLPSVALYALALHAVGHLLLFRCHCRGVDH
HAMEFLLDLATDVVGFAWINLAEEMLAQVFLVTARTAFLYSVLALAASLG
AMEIGSCVRRLLKWPPEFDGTANEFDAGSFALPTSWLVTQAVHIALYGFF
YRTSVVGGQDGRGDRDEKVDVRLAASLFLLVYAMLCSAIAARLIGGTVAA
ASVFTDPDVGIDGIGGESSLAQGEGAESVDRSDLVIRTVEAGGPFRAALA
YDMITSSSSRSQPRDQELPKRERGLDAPLEGQGATDHSGTQRATMGDVQA
MPSPEWEDGETSGGNGGAAASSEARPETTATLFAAAVGAMEASRTRREYL
RRGLKAYVRITVGMMVGW
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mRNA from alignment at H-elongata_contig70294:841..3221+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70294.14687.1 ID=mRNA_H-elongata_contig70294.14687.1|Name=mRNA_H-elongata_contig70294.14687.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2381bp|location=Sequence derived from alignment at H-elongata_contig70294:841..3221+ (Himanthalia elongata Himel1 dioecious)
CAGGTGTTTTGGCTGATCTTAGAGTCGACCGCAGGCAACGAGGACAGCCG
CGGGTATGTCCGCCTGCCCAGCGTAGCGCTGTACGCCCTGGCTCTCCACG
CCGTCGGGCACCTCCTCCTCTTCCGCTGCCATTGCCGCGGAGTGGACCAC
CACGCCATGGAGTTCCTCCTGGACCTCGCGACCGACGTCGTCGGGTTCGC
GTGGATCAACCTGGCCGAGGAGATGCTCGCCCAGGTTCGACGGGTGGAAT
CGTGTGTGTGTGTTTGTGTATGTGTGTATATTTATTAAATTGCATACTGT
ATAACCGCGCAATCCGGCCCTGTCGTCCTAGTCCTTCTATGCCACTCATA
TTGATCCTCCTAGGGGGGGATGTGGATGTGTTATTACACATAACCTCCTC
CGATACTGGAAATGACTGTATCGCAATGTCCACTCTACCAATAGTGGGTG
TGGGAAAAGAAAAGAAAAGAAAGGCACACAGTAATTAGTTCATGGGGTTA
CCTGAATAGACTGCACCCGTTCGTCAAGCTATAGGACTGCCGGCTCAATG
TCGGTGGATTCTTGGTCGCAAACGCCATCGGTGTGCAATTGGGTGACCTG
ATGAAATCGAGATTGGCCCGATGGAGGTTGACGGTAGAGATGGACGCCCT
GGCGGAAAACGAGAGGATCGAAAGGATCTCAGGAGTACGCACGAGATTAA
GCCTGAGTTGAAAGAATGAGCAAGCTGACGCGGGACGGGACGGCCCGGCC
GAACCCGCCTCGCGAGACCAAATTATCAGGCGCGAACGGGGACATGGAAA
AATATTTTTCCCTGTTCAGCTGGCCACAAACGGAAGGCAACCAAATCCGA
TTGATGCTTACTCTGCTTATGTTATCACCACACAACCAGCAATCCGGCCT
TTCATGCTAGTCATTCTACGCTACTGGCATTGGTCCTCCCAATAGGGTAT
CAATAATATTTGTTCATGTTTTTGTGTGTTGCGTATTATTAAATTGCACA
TTAGCACGCAATCCGGCGGTTCAAGATTGAAACTCAGAGCAGCAGTTGAG
GCCAATCCCTCTGTCAAAAACGCACGCGCCTAGCCGTTCGGCCTCTCTTG
TCCAAATTATATTTCGAGGCGCAGCGGAAAATCATCGTCCCCCCGCGCTG
ATGGCGCTGCCCCGCGTACCAGATACTGCACACACATTGACGATATGCCT
TCACGGCCCTGCCAATCTCGCTCCCGCGGCATCATTCAAAGTCCAGGTTT
TTCTTGTGACGGCCAGGACCGCGTTCCTGTACTCCGTGCTTGCACTGGCG
GCGAGCCTGGGAGCCATGGAAATCGGATCCTGCGTCAGGCGCCTCCTCAA
GTGGCCGCCGGAATTTGATGGAACGGCGAATGAGTTTGACGCGGGATCTT
TCGCTCTGCCCACCAGGTTTGTTCTATTCTTGAAACCGCGAAGCGGGGGT
AGCGGCGAGCCAATTGCTGGCTTGATGTGCGCGTGGTGTTCTCATGATAA
TTCTTTTGTCGCCCGTTTCCAGGTGTTTCTCAACATATCCGCGCTTCTGT
GATCACGCCGTACCTCGACGCCATCCGTATAATTATGTGGCGTTGCTCAA
CGTAACATCAGAGTCAGTTTGTTTGCACGCCATTCGACGCCCGCCCAATA
CGTTTCTTGCCCGTTGCCCCACCCGCTCAAGCTGGCTCGTGACCCAGGCC
GTGCACATTGCGCTCTACGGTTTCTTTTACCGCACAAGCGTCGTTGGGGG
GCAAGACGGGAGAGGTGATAGGGATGAGAAAGTTGATGTCCGCCTAGCCG
CGTCTTTGTTCCTCCTCGTCTACGCGATGCTTTGTTCCGCAATCGCTGCT
CGCCTAATCGGCGGGACAGTGGCGGCGGCCTCCGTTTTCACCGACCCCGA
CGTTGGAATAGATGGTATCGGCGGCGAAAGTAGCCTGGCACAAGGTGAGG
GAGCAGAAAGCGTGGATCGAAGCGATCTCGTTATCCGGACTGTCGAGGCA
GGAGGTCCGTTCAGGGCGGCACTAGCGTACGATATGATCACCTCGTCATC
CTCTCGCAGCCAACCACGCGACCAGGAACTCCCGAAACGGGAGAGGGGCC
TCGACGCCCCTCTGGAGGGTCAAGGTGCTACTGACCACAGCGGTACGCAA
CGTGCTACGATGGGTGATGTCCAAGCGATGCCGTCTCCTGAATGGGAGGA
CGGAGAGACGAGCGGGGGAAACGGTGGGGCGGCCGCCTCGTCGGAGGCTC
GACCGGAAACCACGGCGACGTTGTTCGCGGCAGCGGTGGGAGCGATGGAG
GCTAGCCGCACTCGACGCGAATACCTGCGACGTGGACTCAAGGCCTACGT
GAGGATCACCGTTGGTATGATGGTTGGCTGG
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Coding sequence (CDS) from alignment at H-elongata_contig70294:841..3221+

>mRNA_H-elongata_contig70294.14687.1 ID=mRNA_H-elongata_contig70294.14687.1|Name=mRNA_H-elongata_contig70294.14687.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2208bp|location=Sequence derived from alignment at H-elongata_contig70294:841..3221+ (Himanthalia elongata Himel1 dioecious)
CAGGTGTTTTGGCTGATCTTAGAGTCGACCGCAGGCAACGAGGACAGCCG
CGGGTATGTCCGCCTGCCCAGCGTAGCGCTGTACGCCCTGGCTCTCCACG
CCGTCGGGCACCTCCTCCTCTTCCGCTGCCATTGCCGCGGAGTGGACCAC
CACGCCATGGAGTTCCTCCTGGACCTCGCGACCGACGTCGTCGGGTTCGC
GTGGATCAACCTGGCCGAGGAGATGCTCGCCCAGCAGGTGTTTTGGCTGA
TCTTAGAGTCGACCGCAGGCAACGAGGACAGCCGCGGGTATGTCCGCCTG
CCCAGCGTAGCGCTGTACGCCCTGGCTCTCCACGCCGTCGGGCACCTCCT
CCTCTTCCGCTGCCATTGCCGCGGAGTGGACCACCACGCCATGGAGTTCC
TCCTGGACCTCGCGACCGACGTCGTCGGGTTCGCGTGGATCAACCTGGCC
GAGGAGATGCTCGCCCAGGTTTTTCTTGTGACGGCCAGGACCGCGTTCCT
GTACTCCGTGCTTGCACTGGCGGCGAGCCTGGGAGCCATGGAAATCGGAT
CCTGCGTCAGGCGCCTCCTCAAGTGGCCGCCGGAATTTGATGGAACGGCG
AATGAGTTTGACGCGGGATCTTTCGCTCTGCCCACCAGGTTTTTCTTGTG
ACGGCCAGGACCGCGTTCCTGTACTCCGTGCTTGCACTGGCGGCGAGCCT
GGGAGCCATGGAAATCGGATCCTGCGTCAGGCGCCTCCTCAAGTGGCCGC
CGGAATTTGATGGAACGGCGAATGAGTTTGACGCGGGATCTTTCGCTCTG
CCCACCAGCTGGCTCGTGACCCAGGCCGTGCACATTGCGCTCTACGGTTT
CTTTTACCGCACAAGCGTCGTTGGGGGGCAAGACGGGAGAGGTGATAGGG
ATGAGAAAGTTGATGTCCGCCTAGCCGCGTCTTTGTTCCTCCTCGTCTAC
GCGATGCTTTGTTCCGCAATCGCTGCTCGCCTAATCGGCGGGACAGTGGC
GGCGGCCTCCGTTTTCACCGACCCCGACGTTGGAATAGATGGTATCGGCG
GCGAAAGTAGCCTGGCACAAGGTGAGGGAGCAGAAAGCGTGGATCGAAGC
GATCTCGTTATCCGGACTGTCGAGGCAGGAGGTCCGTTCAGGGCGGCACT
AGCGTACGATATGATCACCTCGTCATCCTCTCGCAGCCAACCACGCGACC
AGGAACTCCCGAAACGGGAGAGGGGCCTCGACGCCCCTCTGGAGGGTCAA
GGTGCTACTGACCACAGCGGTACGCAACGTGCTACGATGGGTGATGTCCA
AGCGATGCCGTCTCCTGAATGGGAGGACGGAGAGACGAGCGGGGGAAACG
GTGGGGCGGCCGCCTCGTCGGAGGCTCGACCGGAAACCACGGCGACGTTG
TTCGCGGCAGCGGTGGGAGCGATGGAGGCTAGCCGCACTCGACGCGAATA
CCTGCGACGTGGACTCAAGGCCTACGTGAGGATCACCGTTGGTATGATGG
TTGGCTGGCTGGCTCGTGACCCAGGCCGTGCACATTGCGCTCTACGGTTT
CTTTTACCGCACAAGCGTCGTTGGGGGGCAAGACGGGAGAGGTGATAGGG
ATGAGAAAGTTGATGTCCGCCTAGCCGCGTCTTTGTTCCTCCTCGTCTAC
GCGATGCTTTGTTCCGCAATCGCTGCTCGCCTAATCGGCGGGACAGTGGC
GGCGGCCTCCGTTTTCACCGACCCCGACGTTGGAATAGATGGTATCGGCG
GCGAAAGTAGCCTGGCACAAGGTGAGGGAGCAGAAAGCGTGGATCGAAGC
GATCTCGTTATCCGGACTGTCGAGGCAGGAGGTCCGTTCAGGGCGGCACT
AGCGTACGATATGATCACCTCGTCATCCTCTCGCAGCCAACCACGCGACC
AGGAACTCCCGAAACGGGAGAGGGGCCTCGACGCCCCTCTGGAGGGTCAA
GGTGCTACTGACCACAGCGGTACGCAACGTGCTACGATGGGTGATGTCCA
AGCGATGCCGTCTCCTGAATGGGAGGACGGAGAGACGAGCGGGGGAAACG
GTGGGGCGGCCGCCTCGTCGGAGGCTCGACCGGAAACCACGGCGACGTTG
TTCGCGGCAGCGGTGGGAGCGATGGAGGCTAGCCGCACTCGACGCGAATA
CCTGCGACGTGGACTCAAGGCCTACGTGAGGATCACCGTTGGTATGATGG
TTGGCTGG
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