mRNA_H-elongata_contig70179.14678.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70179.14678.1
Unique NamemRNA_H-elongata_contig70179.14678.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig70179.14678.1 vs. uniprot
Match: A0A6H5LPP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPP1_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 2.630e-34
Identity = 65/92 (70.65%), Postives = 78/92 (84.78%), Query Frame = 1 
Query:    1 VRCRITGAFLVEGWASASLRPSVLSAAVLSHEDLRPGAIVDGEVLAVKTFGLLVKLGDGVSTLVPKIHLADATVKNPKIRFKVGLFSPGRLL 276
            VRCR+TG+ LVEGWA+ASLRPSVLSAAVL +EDL+PG++V+GEV AV+ FGLLVKLG+GV  LVP+ HL D T+KNPK RFKVG    GR+L
Sbjct:  588 VRCRVTGSSLVEGWAAASLRPSVLSAAVLRYEDLQPGSLVEGEVAAVEAFGLLVKLGEGVRALVPRNHLGDVTIKNPKARFKVGARVKGRVL 679
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BLAST of mRNA_H-elongata_contig70179.14678.1 vs. uniprot
Match: D7FRR9_ECTSI (rRNA biogenesis protein rrp5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR9_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 1.240e-33
Identity = 65/92 (70.65%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:    1 VRCRITGAFLVEGWASASLRPSVLSAAVLSHEDLRPGAIVDGEVLAVKTFGLLVKLGDGVSTLVPKIHLADATVKNPKIRFKVGLFSPGRLL 276
            VRCR+TG+ LVEGWA+ASLRPSVLSAAVL ++DL+PG++V+GEV AV+ FGLLVKLG+GV  LVPK HL D  VKNPK RFKVG    GR+L
Sbjct:  536 VRCRVTGSSLVEGWAAASLRPSVLSAAVLRYQDLKPGSLVEGEVAAVEAFGLLVKLGEGVRALVPKNHLGDVGVKNPKARFKVGARVKGRVL 627
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BLAST of mRNA_H-elongata_contig70179.14678.1 vs. uniprot
Match: UPI001E1D8281 (protein RRP5 homolog isoform X1 n=2 Tax=Echinops telfairi TaxID=9371 RepID=UPI001E1D8281)

HSP 1 Score: 79.7 bits (195), Expect = 2.140e-15
Identity = 37/83 (44.58%), Postives = 58/83 (69.88%), Query Frame = 1 
Query:    4 RCRITGAFLVEGWASASLRPSVLSAAVLSHEDLRPGAIVDGEVLAVKTFGLLVKLGDGVSTLVPKIHLADATVKNPKIRFKVG 252
            +CRI     ++  A  SLR SV+ A  +S+ D++PGA+V G VLA+K +G+LVK+G  +  LVP +HLAD  +KNP+ ++++G
Sbjct:  415 KCRIIDYSPMDELALLSLRTSVIEAQYISYHDIKPGAVVKGTVLAIKPYGMLVKVGGQIRGLVPPMHLADIPMKNPEKKYRIG 497
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BLAST of mRNA_H-elongata_contig70179.14678.1 vs. uniprot
Match: A0A452RUC4_URSAM (Programmed cell death 11 n=1 Tax=Ursus americanus TaxID=9643 RepID=A0A452RUC4_URSAM)

HSP 1 Score: 79.3 bits (194), Expect = 2.920e-15
Identity = 34/83 (40.96%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:    4 RCRITGAFLVEGWASASLRPSVLSAAVLSHEDLRPGAIVDGEVLAVKTFGLLVKLGDGVSTLVPKIHLADATVKNPKIRFKVG 252
            +CR+     ++  A  SLR S++ A  L + D++PGA+V+G VL VK++G+LVK+G+ +  L+P +HLAD  +KNP+ ++++G
Sbjct:  419 KCRVIDYSQMDELALLSLRTSIIEAQYLRYHDIKPGALVEGTVLTVKSYGMLVKVGEQIRGLIPPMHLADILMKNPEKKYRIG 501
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BLAST of mRNA_H-elongata_contig70179.14678.1 vs. uniprot
Match: A0A452VGI4_URSMA (Programmed cell death 11 n=1 Tax=Ursus maritimus TaxID=29073 RepID=A0A452VGI4_URSMA)

HSP 1 Score: 79.3 bits (194), Expect = 2.920e-15
Identity = 34/83 (40.96%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:    4 RCRITGAFLVEGWASASLRPSVLSAAVLSHEDLRPGAIVDGEVLAVKTFGLLVKLGDGVSTLVPKIHLADATVKNPKIRFKVG 252
            +CR+     ++  A  SLR S++ A  L + D++PGA+V+G VL VK++G+LVK+G+ +  L+P +HLAD  +KNP+ ++++G
Sbjct:  418 KCRVIDYSQMDELALLSLRTSIIEAQYLRYHDIKPGALVEGTVLTVKSYGMLVKVGEQIRGLIPPMHLADILMKNPEKKYRIG 500
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BLAST of mRNA_H-elongata_contig70179.14678.1 vs. uniprot
Match: A0A452VGN1_URSMA (Programmed cell death 11 n=1 Tax=Ursus maritimus TaxID=29073 RepID=A0A452VGN1_URSMA)

HSP 1 Score: 79.3 bits (194), Expect = 2.920e-15
Identity = 34/83 (40.96%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:    4 RCRITGAFLVEGWASASLRPSVLSAAVLSHEDLRPGAIVDGEVLAVKTFGLLVKLGDGVSTLVPKIHLADATVKNPKIRFKVG 252
            +CR+     ++  A  SLR S++ A  L + D++PGA+V+G VL VK++G+LVK+G+ +  L+P +HLAD  +KNP+ ++++G
Sbjct:  416 KCRVIDYSQMDELALLSLRTSIIEAQYLRYHDIKPGALVEGTVLTVKSYGMLVKVGEQIRGLIPPMHLADILMKNPEKKYRIG 498
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BLAST of mRNA_H-elongata_contig70179.14678.1 vs. uniprot
Match: A0A452VGH6_URSMA (Programmed cell death 11 n=2 Tax=Ursus maritimus TaxID=29073 RepID=A0A452VGH6_URSMA)

HSP 1 Score: 79.3 bits (194), Expect = 2.920e-15
Identity = 34/83 (40.96%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:    4 RCRITGAFLVEGWASASLRPSVLSAAVLSHEDLRPGAIVDGEVLAVKTFGLLVKLGDGVSTLVPKIHLADATVKNPKIRFKVG 252
            +CR+     ++  A  SLR S++ A  L + D++PGA+V+G VL VK++G+LVK+G+ +  L+P +HLAD  +KNP+ ++++G
Sbjct:  418 KCRVIDYSQMDELALLSLRTSIIEAQYLRYHDIKPGALVEGTVLTVKSYGMLVKVGEQIRGLIPPMHLADILMKNPEKKYRIG 500
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BLAST of mRNA_H-elongata_contig70179.14678.1 vs. uniprot
Match: A0A8I6AFK2_RAT (Programmed cell death 11 n=1 Tax=Rattus norvegicus TaxID=10116 RepID=A0A8I6AFK2_RAT)

HSP 1 Score: 77.8 bits (190), Expect = 1.010e-14
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 1 
Query:    4 RCRITGAFLVEGWASASLRPSVLSAAVLSHEDLRPGAIVDGEVLAVKTFGLLVKLGDGVSTLVPKIHLADATVKNPKIRFKVG 252
            RCRI     ++  A  SLR S+++A  L ++D++ G IV G+VLA+K FG+LVK+G+ +  LVP +HLAD  +KNP+ +F  G
Sbjct:  418 RCRIIDYSQMDELALLSLRKSIIAAPFLRYQDIKTGTIVKGKVLALKPFGMLVKVGEQMRGLVPSMHLADIMMKNPEKKFNTG 500
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BLAST of mRNA_H-elongata_contig70179.14678.1 vs. uniprot
Match: UPI000B4F903E (protein RRP5 homolog n=1 Tax=Meriones unguiculatus TaxID=10047 RepID=UPI000B4F903E)

HSP 1 Score: 77.8 bits (190), Expect = 1.010e-14
Identity = 37/83 (44.58%), Postives = 56/83 (67.47%), Query Frame = 1 
Query:    4 RCRITGAFLVEGWASASLRPSVLSAAVLSHEDLRPGAIVDGEVLAVKTFGLLVKLGDGVSTLVPKIHLADATVKNPKIRFKVG 252
            +CRI    L++  A  SLR SV++A  L + D+R G +V G VLA+K FG+LVK+G+ +  LV  +HLAD  +KNP+ ++ +G
Sbjct:  417 KCRIIDYSLMDELALLSLRKSVIAARFLRYHDIRTGTVVKGTVLAIKPFGILVKVGEQIKGLVSSLHLADVMMKNPEKKYHIG 499
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BLAST of mRNA_H-elongata_contig70179.14678.1 vs. uniprot
Match: UPI0013F3083F (protein RRP5 homolog n=1 Tax=Rattus rattus TaxID=10117 RepID=UPI0013F3083F)

HSP 1 Score: 77.8 bits (190), Expect = 1.010e-14
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 1 
Query:    4 RCRITGAFLVEGWASASLRPSVLSAAVLSHEDLRPGAIVDGEVLAVKTFGLLVKLGDGVSTLVPKIHLADATVKNPKIRFKVG 252
            RCRI     ++  A  SLR S+++A  L ++D++ G IV G+VLA+K FG+LVK+G+ +  LVP +HLAD  +KNP+ +F  G
Sbjct:  418 RCRIIDYSQMDELALLSLRKSIIAAPFLRYQDIKTGTIVKGKVLALKPFGMLVKVGEQMRGLVPSMHLADIMMKNPEKKFNTG 500
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70179.14678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LPP1_9PHAE2.630e-3470.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRR9_ECTSI1.240e-3370.65rRNA biogenesis protein rrp5 n=1 Tax=Ectocarpus si... [more]
UPI001E1D82812.140e-1544.58protein RRP5 homolog isoform X1 n=2 Tax=Echinops t... [more]
A0A452RUC4_URSAM2.920e-1540.96Programmed cell death 11 n=1 Tax=Ursus americanus ... [more]
A0A452VGI4_URSMA2.920e-1540.96Programmed cell death 11 n=1 Tax=Ursus maritimus T... [more]
A0A452VGN1_URSMA2.920e-1540.96Programmed cell death 11 n=1 Tax=Ursus maritimus T... [more]
A0A452VGH6_URSMA2.920e-1540.96Programmed cell death 11 n=2 Tax=Ursus maritimus T... [more]
A0A8I6AFK2_RAT1.010e-1445.78Programmed cell death 11 n=1 Tax=Rattus norvegicus... [more]
UPI000B4F903E1.010e-1444.58protein RRP5 homolog n=1 Tax=Meriones unguiculatus... [more]
UPI0013F3083F1.010e-1445.78protein RRP5 homolog n=1 Tax=Rattus rattus TaxID=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70179contigH-elongata_contig70179:122..397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.1
Seed ortholog evalue1.3e-28
Seed eggNOG ortholog2880.D7FRR9
Preferred nameRRP5
KEGG koko:K14792,ko:K20353
GOsGO:0000027,GO:0000028,GO:0000447,GO:0000460,GO:0000462,GO:0000463,GO:0000464,GO:0000466,GO:0000469,GO:0000470,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0009553,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032991,GO:0034463,GO:0034470,GO:0034471,GO:0034511,GO:0034512,GO:0034513,GO:0034622,GO:0034641,GO:0034660,GO:0042134,GO:0042254,GO:0042255,GO:0042273,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048229,GO:0048856,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsCOG0539@1,KOG1070@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931100.4437883-CDS-H-elongata_contig70179:121..3971622931100.4437883-CDS-H-elongata_contig70179:121..397Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70179 122..397 +
1691679698.185074-CDS-H-elongata_contig70179:121..3971691679698.185074-CDS-H-elongata_contig70179:121..397Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70179 122..397 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70179.14678.1prot_H-elongata_contig70179.14678.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70179 122..397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70179.14678.1

>prot_H-elongata_contig70179.14678.1 ID=prot_H-elongata_contig70179.14678.1|Name=mRNA_H-elongata_contig70179.14678.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
VRCRITGAFLVEGWASASLRPSVLSAAVLSHEDLRPGAIVDGEVLAVKTF
GLLVKLGDGVSTLVPKIHLADATVKNPKIRFKVGLFSPGRLL
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mRNA from alignment at H-elongata_contig70179:122..397+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70179.14678.1 ID=mRNA_H-elongata_contig70179.14678.1|Name=mRNA_H-elongata_contig70179.14678.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=276bp|location=Sequence derived from alignment at H-elongata_contig70179:122..397+ (Himanthalia elongata Himel1 dioecious)
GTACGCTGCCGTATCACGGGCGCCTTTCTGGTTGAAGGCTGGGCGTCCGC
GTCTCTTCGGCCTTCGGTGCTGTCTGCCGCGGTTTTGAGTCATGAGGACT
TGCGCCCCGGGGCAATCGTCGATGGAGAAGTCTTGGCTGTGAAGACGTTC
GGTCTATTGGTTAAACTTGGGGACGGGGTGAGCACGCTGGTGCCGAAGAT
TCACCTCGCCGATGCGACGGTCAAGAACCCCAAGATCAGATTCAAGGTGG
GTTTGTTTTCCCCAGGCCGACTTTTA
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Coding sequence (CDS) from alignment at H-elongata_contig70179:122..397+

>mRNA_H-elongata_contig70179.14678.1 ID=mRNA_H-elongata_contig70179.14678.1|Name=mRNA_H-elongata_contig70179.14678.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig70179:122..397+ (Himanthalia elongata Himel1 dioecious)
GTACGCTGCCGTATCACGGGCGCCTTTCTGGTTGAAGGCTGGGCGTCCGC
GTCTCTTCGGCCTTCGGTGCTGTCTGCCGCGGTTTTGAGTCATGAGGACT
TGCGCCCCGGGGCAATCGTCGATGGAGAAGTCTTGGCTGTGAAGACGTTC
GGTCTATTGGTTAAACTTGGGGACGGGGTGAGCACGCTGGTGCCGAAGAT
TCACCTCGCCGATGCGACGGTCAAGAACCCCAAGATCAGATTCAAGGTGG
GTTTGTTTTCCCCAGGCCGACTTTTAGTACGCTGCCGTATCACGGGCGCC
TTTCTGGTTGAAGGCTGGGCGTCCGCGTCTCTTCGGCCTTCGGTGCTGTC
TGCCGCGGTTTTGAGTCATGAGGACTTGCGCCCCGGGGCAATCGTCGATG
GAGAAGTCTTGGCTGTGAAGACGTTCGGTCTATTGGTTAAACTTGGGGAC
GGGGTGAGCACGCTGGTGCCGAAGATTCACCTCGCCGATGCGACGGTCAA
GAACCCCAAGATCAGATTCAAGGTGGGTTTGTTTTCCCCAGGCCGACTTT
TA
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