mRNA_H-elongata_contig70160.14675.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig70160.14675.1 vs. uniprot
Match: D7FYI4_ECTSI (S5 DRBM domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=D7FYI4_ECTSI) HSP 1 Score: 184 bits (466), Expect = 6.650e-56 Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 1
Query: 73 DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEFQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEV 351
DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKE+QIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEV
Sbjct: 52 DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEV 144
BLAST of mRNA_H-elongata_contig70160.14675.1 vs. uniprot
Match: A0A7S2BZ58_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BZ58_9STRA) HSP 1 Score: 159 bits (403), Expect = 3.420e-46 Identity = 80/93 (86.02%), Postives = 85/93 (91.40%), Query Frame = 1
Query: 73 DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEFQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEV 351
DDDKEWVPITKLGRLVKE KIKSLE+I+LFSM IKE+QIVD FLG+KLKDEVM IMPVQK + AGQ TRFKAFVAVGD SGHVGLGVKCAKEV
Sbjct: 63 DDDKEWVPITKLGRLVKEQKIKSLEEIFLFSMPIKEYQIVDLFLGTKLKDEVMGIMPVQKQTTAGQRTRFKAFVAVGDFSGHVGLGVKCAKEV 155
BLAST of mRNA_H-elongata_contig70160.14675.1 vs. uniprot
Match: A0A835Z6C9_9STRA (40S ribosomal protein S2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6C9_9STRA) HSP 1 Score: 157 bits (396), Expect = 1.140e-45 Identity = 79/90 (87.78%), Postives = 83/90 (92.22%), Query Frame = 1
Query: 82 KEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEFQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEV 351
KEWVP+TKLGRLVKE KIKSLE+IY FSM I+E QIVD FLG KLKDEVMKIMPVQKVSAAGQITRFKAFVAVGD +GHVGLGVKCAKEV
Sbjct: 31 KEWVPVTKLGRLVKEEKIKSLEEIYSFSMRIQECQIVDKFLGDKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDSNGHVGLGVKCAKEV 120
BLAST of mRNA_H-elongata_contig70160.14675.1 vs. uniprot
Match: RS2_DROME (40S ribosomal protein S2 n=40 Tax=Bilateria TaxID=33213 RepID=RS2_DROME) HSP 1 Score: 154 bits (388), Expect = 2.670e-44 Identity = 71/93 (76.34%), Postives = 85/93 (91.40%), Query Frame = 1
Query: 73 DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEFQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEV 351
+D KEWVP+TKLGRLV+E KIKSLE+IYL+S+ IKEF+I+DFFLGS LKDEV+KIMPVQK + AGQ TRFKAFVA+GD +GH+GLGVKC+KEV
Sbjct: 38 EDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 130
BLAST of mRNA_H-elongata_contig70160.14675.1 vs. uniprot
Match: A0A6S7JAX4_PARCT (40S ribosomal protein S2 n=4 Tax=Alcyonacea TaxID=40677 RepID=A0A6S7JAX4_PARCT) HSP 1 Score: 154 bits (390), Expect = 3.850e-44 Identity = 74/92 (80.43%), Postives = 84/92 (91.30%), Query Frame = 1
Query: 76 DDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEFQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEV 351
DDKEWVP+TKLGRLVKE KIKSLE IYLFS+ IKEF+I+DFFLG+ LKDEV+KIMPVQK + AGQ TRFKAFVA+GD +GHVGLGVKC+KEV
Sbjct: 66 DDKEWVPVTKLGRLVKELKIKSLEQIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDHNGHVGLGVKCSKEV 157
BLAST of mRNA_H-elongata_contig70160.14675.1 vs. uniprot
Match: A0A7R9QY82_9ACAR (40S ribosomal protein S2 (Fragment) n=1 Tax=Oppiella nova TaxID=334625 RepID=A0A7R9QY82_9ACAR) HSP 1 Score: 150 bits (380), Expect = 3.880e-44 Identity = 70/93 (75.27%), Postives = 84/93 (90.32%), Query Frame = 1
Query: 73 DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEFQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEV 351
D DKEW+P+TKLGRLVK+ KIKSLE+IY FS+ IKEF+I+DFF+G +LKDEV+KIMPVQK + AGQ TRFKAFVA+GD +GHVGLGVKC+KEV
Sbjct: 45 DGDKEWIPVTKLGRLVKDGKIKSLEEIYRFSLPIKEFEIIDFFIGPQLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEV 137
BLAST of mRNA_H-elongata_contig70160.14675.1 vs. uniprot
Match: A0A2G9R921_LITCT (40S ribosomal protein S2 n=2 Tax=Tetrapoda TaxID=32523 RepID=A0A2G9R921_LITCT) HSP 1 Score: 152 bits (383), Expect = 4.640e-44 Identity = 73/92 (79.35%), Postives = 84/92 (91.30%), Query Frame = 1
Query: 76 DDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEFQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEV 351
DDKEWVP+TKLGRLVK+ KIKSLE+IYLFS+ IKE +I+DFFLGS LKDEV+KIMPVQK + AGQ TRFKAFVA+GD +GHVGLGVKC+KEV
Sbjct: 42 DDKEWVPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGSTLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEV 133
BLAST of mRNA_H-elongata_contig70160.14675.1 vs. uniprot
Match: A0A5B8MSG7_9CHLO (Ribosomal protein S5 n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MSG7_9CHLO) HSP 1 Score: 153 bits (387), Expect = 4.800e-44 Identity = 73/93 (78.49%), Postives = 85/93 (91.40%), Query Frame = 1
Query: 73 DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEFQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEV 351
D++ WVP+TKLGRLV+ KIKSLE IYLFSM IKE+QI+D+FLGS+LKDEVMKIMPVQK ++AGQ TRFKAFVAVGDE+GH+GLGVKCAKEV
Sbjct: 44 DEEDRWVPVTKLGRLVQSGKIKSLEQIYLFSMPIKEYQIIDYFLGSQLKDEVMKIMPVQKQTSAGQRTRFKAFVAVGDENGHLGLGVKCAKEV 136
BLAST of mRNA_H-elongata_contig70160.14675.1 vs. uniprot
Match: A0A8C6JXS0_MELUD (Ribosomal protein S2 n=1 Tax=Melopsittacus undulatus TaxID=13146 RepID=A0A8C6JXS0_MELUD) HSP 1 Score: 150 bits (379), Expect = 6.010e-44 Identity = 71/92 (77.17%), Postives = 84/92 (91.30%), Query Frame = 1
Query: 76 DDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEFQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEV 351
+DKEW+P+TKLGRLVK+ KIKSLE+IYLFS+ IKE +I+DFFLGS LKDEV+KIMPVQK + AGQ TRFKAFVA+GD +GHVGLGVKC+KEV
Sbjct: 63 EDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEV 154
BLAST of mRNA_H-elongata_contig70160.14675.1 vs. uniprot
Match: A0A1L3GA47_9NEOP (Ribosomal protein S2 (Fragment) n=13 Tax=Hesperiidae TaxID=40093 RepID=A0A1L3GA47_9NEOP) HSP 1 Score: 148 bits (374), Expect = 7.790e-44 Identity = 68/93 (73.12%), Postives = 83/93 (89.25%), Query Frame = 1
Query: 73 DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEFQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEV 351
+D KEWVP+TKLGRLV+E KI+ LE+IYLFS+ IKEF+I+DFFLG+ L DEV+KIMPVQK + AGQ TRFKAFVA+GD +GH+GLGVKC+KEV
Sbjct: 20 EDQKEWVPVTKLGRLVREGKIEKLENIYLFSLPIKEFEIIDFFLGASLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 112 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70160.14675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig70160.14675.1 >prot_H-elongata_contig70160.14675.1 ID=prot_H-elongata_contig70160.14675.1|Name=mRNA_H-elongata_contig70160.14675.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp GRGGFGRGRGDRGRGRGRGRGRPRDDDKEWVPITKLGRLVKENKIKSLEDback to top mRNA from alignment at H-elongata_contig70160:1936..2876+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig70160.14675.1 ID=mRNA_H-elongata_contig70160.14675.1|Name=mRNA_H-elongata_contig70160.14675.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=941bp|location=Sequence derived from alignment at H-elongata_contig70160:1936..2876+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig70160:1936..2876+ >mRNA_H-elongata_contig70160.14675.1 ID=mRNA_H-elongata_contig70160.14675.1|Name=mRNA_H-elongata_contig70160.14675.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig70160:1936..2876+ (Himanthalia elongata Himel1 dioecious)back to top |