mRNA_H-elongata_contig70160.14674.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70160.14674.1
Unique NamemRNA_H-elongata_contig70160.14674.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70160.14674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70160contigH-elongata_contig70160:1112..1818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size667
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70160.14674.1prot_H-elongata_contig70160.14674.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70160 1130..1511 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931100.1923437-UTR-H-elongata_contig70160:1111..11291622931100.1923437-UTR-H-elongata_contig70160:1111..1129Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70160 1112..1129 +
1691679698.0530431-UTR-H-elongata_contig70160:1111..11291691679698.0530431-UTR-H-elongata_contig70160:1111..1129Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70160 1112..1129 +
1622931100.231264-UTR-H-elongata_contig70160:1511..18181622931100.231264-UTR-H-elongata_contig70160:1511..1818Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70160 1512..1818 +
1691679698.084449-UTR-H-elongata_contig70160:1511..18181691679698.084449-UTR-H-elongata_contig70160:1511..1818Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70160 1512..1818 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931100.203117-CDS-H-elongata_contig70160:1129..14351622931100.203117-CDS-H-elongata_contig70160:1129..1435Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70160 1130..1435 +
1691679698.0639737-CDS-H-elongata_contig70160:1129..14351691679698.0639737-CDS-H-elongata_contig70160:1129..1435Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70160 1130..1435 +
1622931100.2180107-CDS-H-elongata_contig70160:1475..15111622931100.2180107-CDS-H-elongata_contig70160:1475..1511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70160 1476..1511 +
1691679698.0730095-CDS-H-elongata_contig70160:1475..15111691679698.0730095-CDS-H-elongata_contig70160:1475..1511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70160 1476..1511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70160.14674.1

>prot_H-elongata_contig70160.14674.1 ID=prot_H-elongata_contig70160.14674.1|Name=mRNA_H-elongata_contig70160.14674.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
MADAPAGGAGGGGGGGDDRGGCHFFLTNPNYIVVYRCPLLYRFGPVGLSV
ARELSLPNVITFGFTFMKVISMYFPYCLNCNPSAVNSLIAPVMRRSSSRK
PLARRLCSYREAV*
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mRNA from alignment at H-elongata_contig70160:1112..1818+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70160.14674.1 ID=mRNA_H-elongata_contig70160.14674.1|Name=mRNA_H-elongata_contig70160.14674.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=707bp|location=Sequence derived from alignment at H-elongata_contig70160:1112..1818+ (Himanthalia elongata Himel1 dioecious)
AGGTTTTAAAAGTAGACAATGGCTGACGCTCCAGCAGGCGGTGCAGGGGG
AGGTGGAGGCGGTGGTGATGACCGTGGTGGGTGCCATTTTTTCCTAACCA
ACCCAAATTACATAGTCGTCTACCGCTGTCCTCTCCTGTATAGGTTTGGC
CCTGTAGGGTTGTCTGTGGCCAGAGAGTTATCGTTACCCAACGTGATCAC
ATTCGGTTTCACGTTTATGAAGGTGATCTCGATGTATTTTCCATATTGCC
TGAATTGTAATCCATCAGCAGTAAATAGCCTGATTGCCCCCGTTATGAGG
AGGAGCAGTTCTAGAAAACCTCTCGTCAAGGTGTTTTGAGTGGCCATCAT
CGAGCGTCGGCGAGGCTCGAAGATTATGTAGCTATAGAGAAGCGGTCTGA
TTGGTCCAGGAAAACTTTTAAGACTTTGATGCACACCATCCAACCATTAA
AAAGGTTTGAAGTTCCCGAGGGAGCAAAACTGCAGCAGTCAGGTGGTTAC
ATGAAATTAACTTTTCACGTTCATTTCAGCCCTTCAATCCTTGTGAAAAA
CAGCAGTAACTCACCTTCTCCACCTTCTCCAATTTGATATTATCAAAAAT
ATATTATCGCACGTCAATTTTCTCGAGCTCCATCCCTCCCCCCCCTGACT
CTGAATTTCGCTGCCCCAAATTACAACCACTCGGCGAGGCGATCCCTCCA
GTTCCGG
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Coding sequence (CDS) from alignment at H-elongata_contig70160:1112..1818+

>mRNA_H-elongata_contig70160.14674.1 ID=mRNA_H-elongata_contig70160.14674.1|Name=mRNA_H-elongata_contig70160.14674.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig70160:1112..1818+ (Himanthalia elongata Himel1 dioecious)
ATGGCTGACGCTCCAGCAGGCGGTGCAGGGGGAGGTGGAGGCGGTGGTGA
TGACCGTGGTGGGTGCCATTTTTTCCTAACCAACCCAAATTACATAGTCG
TCTACCGCTGTCCTCTCCTGTATAGGTTTGGCCCTGTAGGGTTGTCTGTG
GCCAGAGAGTTATCGTTACCCAACGTGATCACATTCGGTTTCACGTTTAT
GAAGGTGATCTCGATGTATTTTCCATATTGCCTGAATTGTAATCCATCAG
CAGTAAATAGCCTGATTGCCCCCGTTATGAGGAGGAGCAGTTCTAGAAAA
CCTCTCATGGCTGACGCTCCAGCAGGCGGTGCAGGGGGAGGTGGAGGCGG
TGGTGATGACCGTGGTGGGTGCCATTTTTTCCTAACCAACCCAAATTACA
TAGTCGTCTACCGCTGTCCTCTCCTGTATAGGTTTGGCCCTGTAGGGTTG
TCTGTGGCCAGAGAGTTATCGTTACCCAACGTGATCACATTCGGTTTCAC
GTTTATGAAGGTGATCTCGATGTATTTTCCATATTGCCTGAATTGTAATC
CATCAGCAGTAAATAGCCTGATTGCCCCCGTTATGAGGAGGAGCAGTTCT
AGAAAACCTCTCGCTCGAAGATTATGTAGCTATAGAGAAGCGGTCTGAGC
TCGAAGATTATGTAGCTATAGAGAAGCGGTCTGA
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