mRNA_H-elongata_contig70126.14669.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70126.14669.1
Unique NamemRNA_H-elongata_contig70126.14669.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig70126.14669.1 vs. uniprot
Match: A0A6H5JJC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJC9_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 9.020e-15
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 3 
Query:  123 GRVLSSFGQTETSAWLHRAAALQRYLMYDVPMDQQTLTATHNSFSSDSDNSTHSNFE 293
            GRV   +GQTETS WLHRAAALQRY+ YD+P+   TLTATHNSFS D + STH+NFE
Sbjct:   48 GRV---YGQTETSDWLHRAAALQRYIGYDIPLSSITLTATHNSFSHDRNISTHANFE 101
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70126.14669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJC9_9PHAE9.020e-1570.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70126contigH-elongata_contig70126:1718..2758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size293
Cds size270
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70126.14669.1prot_H-elongata_contig70126.14669.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70126 1718..2735 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931099.6348233-CDS-H-elongata_contig70126:1717..18081622931099.6348233-CDS-H-elongata_contig70126:1717..1808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70126 1718..1808 -
1691679697.7581186-CDS-H-elongata_contig70126:1717..18081691679697.7581186-CDS-H-elongata_contig70126:1717..1808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70126 1718..1808 -
1622931099.6498978-CDS-H-elongata_contig70126:2556..27351622931099.6498978-CDS-H-elongata_contig70126:2556..2735Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70126 2557..2735 -
1691679697.7680497-CDS-H-elongata_contig70126:2556..27351691679697.7680497-CDS-H-elongata_contig70126:2556..2735Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70126 2557..2735 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931099.6637483-UTR-H-elongata_contig70126:2735..27581622931099.6637483-UTR-H-elongata_contig70126:2735..2758Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70126 2736..2758 -
1691679697.7769194-UTR-H-elongata_contig70126:2735..27581691679697.7769194-UTR-H-elongata_contig70126:2735..2758Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70126 2736..2758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70126.14669.1

>prot_H-elongata_contig70126.14669.1 ID=prot_H-elongata_contig70126.14669.1|Name=mRNA_H-elongata_contig70126.14669.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
MKKYARNVAAGRMGVRSVDILRRPVEILALMLFGRVLSSFGQTETSAWLH
RAAALQRYLMYDVPMDQQTLTATHNSFSSDSDNSTHSNFE
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mRNA from alignment at H-elongata_contig70126:1718..2758-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70126.14669.1 ID=mRNA_H-elongata_contig70126.14669.1|Name=mRNA_H-elongata_contig70126.14669.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1041bp|location=Sequence derived from alignment at H-elongata_contig70126:1718..2758- (Himanthalia elongata Himel1 dioecious)
GCTACTTCGTCAGCTTGAAGCCGATGAAGAAATATGCCCGAAATGTCGCT
GCTGGGCGGATGGGGGTTCGATCGGTCGATATATTGCGTAGGCCAGTCGA
AATTCTGGCACTGATGCTCTTTGGGCGGGTGCTTTCGAGCTTTGGCCAGA
CAGAGACCTCTGCATGGCTCCACCGAGCCGCGGCGCTCCAGCGGTATCTC
ATGTGAGCAATTGGGATCATATTTATTCTTGCTATAGCCTCACTTTGGCG
CTGCGTCCGCCCGGAGAGAGACCTCTGAACCCCTTTTTTGAGCGATGAAA
ATAGTTTCTGGTGATTTTAGGAAAAAACTCGAGCCCAACAATACATAGAA
CGTAGAACGTGGAACAAAGTCTTTTAAATAAAAACTACTGTAATTGTAGA
ACTGGTAGGCTACTGTAGCCAACTTGAATTCCCGCCATTTCACATCGACC
CCTGTGAAGCCTACCGTCATATATCTGATATCAACGATCTTATAAAACAA
TACCAGTCTTTTATAAGTAAAAATATTAATGTGACGCTACACGGCAGTGC
AGTACCTACTAACCTCAGCGAGTGCGGCAAGCAATACCTGCGCCTTGAAA
TCTGTCGTAACGGTCCCCTAGCGCGAGGGATCCTACTCCCAGCTCTGCCT
CCGCATTTGTAGAGCGAAACCCGTGTCCAACAAAGTTTTCGTCTTTCACA
ACAGCAGCAGCACAGTTGCTCCCGCTCTATCGCGGTCTGTGGTTGCCCTC
TATTCTTCGTTTCGACCGCTTTTGGATTTCGCGAATACGGCTTCACTCTA
ATCTGTCGTCTGTTGGCTGTTAAATCCTGAGGCTGGTTGTTTTTTCCAGG
CAGGCCTATACTATACGACGTTTTCTCCCCGCTGCTTTCAGCACCACGAG
TGGATGTTCATTGTGCCGCTCTTCGCCCAACACGCCGTTCCGCTGAGCAG
GTACGACGTGCCTATGGACCAGCAGACTCTAACGGCCACACACAACAGCT
TTTCTTCCGACAGCGATAATTCCACACACTCTAATTTTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig70126:1718..2758-

>mRNA_H-elongata_contig70126.14669.1 ID=mRNA_H-elongata_contig70126.14669.1|Name=mRNA_H-elongata_contig70126.14669.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig70126:1718..2758- (Himanthalia elongata Himel1 dioecious)
ATGAAGAAATATGCCCGAAATGTCGCTGCTGGGCGGATGGGGGTTCGATC
GGTCGATATATTGCGTAGGCCAGTCGAAATTCTGGCACTGATGCTCTTTG
GGCGGGTGCTTTCGAGCTTTGGCCAGACAGAGACCTCTGCATGGCTCCAC
CGAGCCGCGGCGCTCCAGCGGTATCTCATATGAAGAAATATGCCCGAAAT
GTCGCTGCTGGGCGGATGGGGGTTCGATCGGTCGATATATTGCGTAGGCC
AGTCGAAATTCTGGCACTGATGCTCTTTGGGCGGGTGCTTTCGAGCTTTG
GCCAGACAGAGACCTCTGCATGGCTCCACCGAGCCGCGGCGCTCCAGCGG
TATCTCATGTACGACGTGCCTATGGACCAGCAGACTCTAACGGCCACACA
CAACAGCTTTTCTTCCGACAGCGATAATTCCACACACTCTAATTTTGAGG
TACGACGTGCCTATGGACCAGCAGACTCTAACGGCCACACACAACAGCTT
TTCTTCCGACAGCGATAATTCCACACACTCTAATTTTGAG
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