mRNA_H-elongata_contig70099.14665.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig70099.14665.1 vs. uniprot
Match: A0A6H5LD91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD91_9PHAE) HSP 1 Score: 136 bits (342), Expect = 2.490e-38 Identity = 68/93 (73.12%), Postives = 74/93 (79.57%), Query Frame = 1
Query: 1 DLHNKRKGNSGKKGLDINPLPEILQGVPLKTRTTLRSIAAALDIPLSTLFDNLKNLGRRSCSRFLKPLLTDEGKTARLLWATRWVRDAPGGAH 279
DLHNKRKGNSG+KGLDI L E LQ + LK RTT+RSIAAAL IP STLFDNL NLG RSCSRFLKPLL+D+ K RL WA RWVR + G AH
Sbjct: 52 DLHNKRKGNSGQKGLDIATLKEALQDIHLKNRTTIRSIAAALGIPKSTLFDNLNNLGLRSCSRFLKPLLSDDWKAQRLAWALRWVRSSAGDAH 144
BLAST of mRNA_H-elongata_contig70099.14665.1 vs. uniprot
Match: A0A024U2I5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U2I5_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 1.660e-16 Identity = 48/113 (42.48%), Postives = 60/113 (53.10%), Query Frame = 1
Query: 4 LHNKRKGNSGKKGLDINPLPEILQGVPLKTRTTLRSIAAALDIPLSTLFDNLKNLGRRSCSRFLKPLLTDEGKTARLLWATRWVRDAPGGAHKFHSFFDFVHLNEKWLYMIEL 342
+H ++KGNSG+K N LPE +Q +P R RS A L IP STL K S LKP+LT+ K RL WA V+D G A F D VH++EKW YM +
Sbjct: 80 VHQRKKGNSGRKRAHTN-LPERIQAIPQSRRYCFRSFAHVLGIPKSTLHCYFKRGVIAKYSTVLKPILTESNKVCRLQWAMNHVKDIDG-AKFFDPMLDTVHVDEKWFYMTRM 190
BLAST of mRNA_H-elongata_contig70099.14665.1 vs. uniprot
Match: W4G031_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G031_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 9.560e-16 Identity = 43/116 (37.07%), Postives = 71/116 (61.21%), Query Frame = 1
Query: 1 DLHNKRKGNSGKKGLDINP-LPEILQGVPLKTRTTLRSIAAALDIPLSTLFDNLKNLGR-RSCSRFLKPLLTDEGKTARLLWATRWVRDAPGGAHKFHSFFDFVHLNEKWLYMIEL 342
D+ +K KGNSG+ L + + ++ V R TLRS++AA IP++T+F ++K R ++ S ++KP LT RL +A +VR P G H F+ D+VH++EKW Y++++
Sbjct: 85 DVASKTKGNSGRHALRTSDEIEAAIRNVLQMQRQTLRSLSAAYGIPMTTIFSHMKKNPRFKARSNYVKPHLTPANIEERLKFAMSFVRPLPSGRHLFNDMHDYVHVDEKWFYLMKV 200
BLAST of mRNA_H-elongata_contig70099.14665.1 vs. uniprot
Match: A0A6H5L9I0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9I0_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 1.490e-15 Identity = 42/77 (54.55%), Postives = 53/77 (68.83%), Query Frame = 1
Query: 4 LHNKRKGNSGKKGLDINPLPEILQGVPLKTRTTLRSIAAALDIPLSTLFDNLKNLGRRSCSRFLKPLLTDEGKTARL 234
L N+R GNSG+KG+ I L E L+ +PL RTT R +AAAL+IPL+TL NLK LG R+ S +KP LTD T +L
Sbjct: 76 LANRRNGNSGRKGVPIEELRERLRDIPLNDRTTQRRLAAALEIPLTTLHKNLKALGLRAHSNAIKPYLTDAENTYKL 152
BLAST of mRNA_H-elongata_contig70099.14665.1 vs. uniprot
Match: A0A024TCG5_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TCG5_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 2.040e-13 Identity = 39/111 (35.14%), Postives = 65/111 (58.56%), Query Frame = 1
Query: 16 RKGNSGK-KGLDINPLPEILQGVPLKTRTTLRSIAAALDIPLSTLFDNLKNLGRRSCSRFLKPLLTDEGKTARLLWATRWVRDAPGGAHKFHSFFDFVHLNEKWLYMIELN 345
+K NSG+ + L++ L ++G P +TLRS+A A IPL++L+ L+ + C+ LKP+LT + K R+++ +R G +H D VH++EKW Y+ +LN
Sbjct: 37 KKANSGRPRKLNMAVLEARIKGAPAFQHSTLRSLAKATGIPLTSLWRLLQTRVMKRCTSRLKPMLTGKHKNDRMMFVKSHLRTTTSGKQVWHDMLDTVHIDEKWFYVSKLN 147
BLAST of mRNA_H-elongata_contig70099.14665.1 vs. uniprot
Match: A0A6H5JEL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL2_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 6.460e-13 Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 1
Query: 4 LHNKRKGNSGKKGLDINPLPEILQGVPLKTRTTLRSIAAALDIPLSTLFDNLKNLGRRSCSRFLKPL 204
+ N+RKGNSG+KG+ + L E L+ +PL RTT R +AAAL IP STL NLK LG R+ S LKPL
Sbjct: 16 IENRRKGNSGRKGIPLEELKERLRDIPLNDRTTQRRLAAALGIPKSTLHRNLKVLGLRAHSNALKPL 82
BLAST of mRNA_H-elongata_contig70099.14665.1 vs. uniprot
Match: W4GIW7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GIW7_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 6.930e-13 Identity = 42/110 (38.18%), Postives = 61/110 (55.45%), Query Frame = 1
Query: 1 DLHNKRKGNSGKKGLDINPLPEILQGVPLKTRTTLRSIAAALDIPLSTLFDNLKNLGRRSCSRFLKPLLTDEGKTARLLWATRWVRDAPGGAHKFHSFFDFVHLNEKWLY 330
D+ ++ KG G+K + + + + LQ +P RTT RSIAAA+++P +TL K S LKP LTD K RL W+ +R G +F D VH++EKWL+
Sbjct: 66 DVSSQMKGRVGRKQVHES-ISQRLQAIPKARRTTFRSIAAAMNVPKTTLHRYYKKGLFIKYSSVLKPSLTDANKVVRLKWSVDALRSGLDGGLRFDDMMDCVHVDEKWLF 174
BLAST of mRNA_H-elongata_contig70099.14665.1 vs. uniprot
Match: A0A6A4ZEB5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZEB5_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 3.270e-12 Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = 1
Query: 1 DLHNKRKGNSGKK-GLDINPLPEILQGVPLKTRTTLRSIAAALDIPLSTLFDNLKNLGRRSC-SRFLKPLLTDEGKTARLLWATRWVRDAPGGAHKFHSFFDFVHLNEKWLYM 333
++ +K +GNSG+K + + + ++ VP R TLRS+AA++ IPL+TL + + R S S +LKP LTD RL +A ++R PG F D VH++EKW Y+
Sbjct: 88 NVASKIRGNSGRKVQRERSDIEAAIRAVPHARRRTLRSVAASVVIPLTTLHRHKMSEPRFSAKSNWLKPRLTDANIKLRLEFAMSFLRSGPGDRQVFSDMHDIVHVDEKWFYL 200
BLAST of mRNA_H-elongata_contig70099.14665.1 vs. uniprot
Match: A0A7G2DX18_ARATH ((thale cress) hypothetical protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A7G2DX18_ARATH) HSP 1 Score: 70.9 bits (172), Expect = 5.830e-12 Identity = 43/112 (38.39%), Postives = 65/112 (58.04%), Query Frame = 1
Query: 1 DLHNKRKGNSGKKGLDINPLPEILQGVPLKTRTTLRSIAAALDIPLSTLFDNLKNLGRRSCSRFLKPLLTDEGKTARLLWATRWV-RDAPGGAHKFHSFFDFVHLNEKWLYM 333
D+ ++RKG G K +I+ L ++ VPL RTT+RS+AAALD+ ST+ +K + S +KP L ++ K ARL + V R + KF ++ VH++EKW YM
Sbjct: 58 DVSHRRKGKCGPKKKEID-LSRVMD-VPLHRRTTIRSVAAALDVSKSTMHRRIKEGNLKRHSNAIKPRLKEDNKKARLQFCLSMVDRCSLPNLPKFVDMYNVVHIDEKWFYM 167
BLAST of mRNA_H-elongata_contig70099.14665.1 vs. uniprot
Match: A0A484LCT6_9ASTE (Uncharacterized protein n=2 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484LCT6_9ASTE) HSP 1 Score: 70.9 bits (172), Expect = 5.890e-12 Identity = 42/106 (39.62%), Postives = 64/106 (60.38%), Query Frame = 1
Query: 25 NSGKKGLDINPLPEILQGVPLKTRTTLRSIAAALDIPLSTLFDNLKNLGRRSCSRFLKPLLTDEGKTARLLWATRWVRDAPGGAH---KFHSFFDFVHLNEKWLYM 333
NSG+K + I+ + + PL+ RTT+RS+AAA+ P ST+ + +K RS S +KP LTD+ K ARL + V PG +F+SF + +H++EKW +M
Sbjct: 49 NSGRKRIVIDA--QAIAETPLRNRTTIRSLAAAIGKPKSTVHEWIKKGMLRSHSNVIKPYLTDDNKVARLRFCLNQVE--PGSMPLQPRFNSFHNVLHIDEKWFFM 150 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70099.14665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig70099.14665.1 >prot_H-elongata_contig70099.14665.1 ID=prot_H-elongata_contig70099.14665.1|Name=mRNA_H-elongata_contig70099.14665.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp DLHNKRKGNSGKKGLDINPLPEILQGVPLKTRTTLRSIAAALDIPLSTLFback to top mRNA from alignment at H-elongata_contig70099:2828..3175+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig70099.14665.1 ID=mRNA_H-elongata_contig70099.14665.1|Name=mRNA_H-elongata_contig70099.14665.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=348bp|location=Sequence derived from alignment at H-elongata_contig70099:2828..3175+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig70099:2828..3175+ >mRNA_H-elongata_contig70099.14665.1 ID=mRNA_H-elongata_contig70099.14665.1|Name=mRNA_H-elongata_contig70099.14665.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig70099:2828..3175+ (Himanthalia elongata Himel1 dioecious)back to top |