mRNA_H-elongata_contig7003.14659.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7003.14659.1
Unique NamemRNA_H-elongata_contig7003.14659.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7003.14659.1 vs. uniprot
Match: D8LQ19_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ19_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 5.380e-35
Identity = 112/287 (39.02%), Postives = 135/287 (47.04%), Query Frame = 1 
Query:   67 MRDFERGTAKNTRKALLKND-VELCRPPSPQEFDGGRDHDSDDES----GSRCHAP-RFVPGDPFANEEADTEAWAKHFTYLSIFPSASLSSDSRALREEDNRRNG-----------GCNEALRVVSEAPGASRVEG--VDD----------GAKREEE----EVVLAKHGIYEEYLAYDCRPPR-DEI-----------EEGCRDEAKS-------------------GMRLSAVDLTRRSKLPASV---------RLRTPQRALREEVMDRLFDELWERLAPDLL 708
            MR+FER +A+NTR+ALL ND + LC PP+     G  D+D    S          P R+VPGDPFANEEAD  AWAKHFTYLS+ P+          R  DN   G              + +    E  G + VEG  + D            +R EE    E V A HG+YEEYLAYDCRPP  D++           EE  R  AK                    G  +S    +    L AS          RL TPQR LR+E+MDRLFDELWER+ PDLL
Sbjct:   57 MREFERSSAENTREALLDNDALLLCEPPASANA-GSADNDGRQTSPLSPXXXXXVPLRYVPGDPFANEEADVGAWAKHFTYLSVVPTERGEGGDAEKRSNDNAGGGLLERGPVAEPPPVRDVMETDEETGGVAAVEGSRIQDLTPEEAAAELAGRRLEEMPQGEEVFASHGVYEEYLAYDCRPPGFDDVTSPGGETMGPGEEDPRLAAKGSGAWAVTGVVPNANSAVGQGAWVSNNAASEPPALGASTTGGSHRVVARLDTPQRELRQEIMDRLFDELWERITPDLL 342
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7003.14659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ19_ECTSI5.380e-3539.02Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7003contigH-elongata_contig7003:9667..10374 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_001280.1
Exons1
Model size708
Cds size708
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931098.7653022-CDS-H-elongata_contig7003:9666..103741622931098.7653022-CDS-H-elongata_contig7003:9666..10374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7003 9667..10374 -
1691679697.378946-CDS-H-elongata_contig7003:9666..103741691679697.378946-CDS-H-elongata_contig7003:9666..10374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7003 9667..10374 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7003.14659.1prot_H-elongata_contig7003.14659.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7003 9667..10374 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7003.14659.1

>prot_H-elongata_contig7003.14659.1 ID=prot_H-elongata_contig7003.14659.1|Name=mRNA_H-elongata_contig7003.14659.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=236bp
GGGWDTSSDEGATGTKQAGGLRMRDFERGTAKNTRKALLKNDVELCRPPS
PQEFDGGRDHDSDDESGSRCHAPRFVPGDPFANEEADTEAWAKHFTYLSI
FPSASLSSDSRALREEDNRRNGGCNEALRVVSEAPGASRVEGVDDGAKRE
EEEVVLAKHGIYEEYLAYDCRPPRDEIEEGCRDEAKSGMRLSAVDLTRRS
KLPASVRLRTPQRALREEVMDRLFDELWERLAPDLL
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mRNA from alignment at H-elongata_contig7003:9667..10374-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7003.14659.1 ID=mRNA_H-elongata_contig7003.14659.1|Name=mRNA_H-elongata_contig7003.14659.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=708bp|location=Sequence derived from alignment at H-elongata_contig7003:9667..10374- (Himanthalia elongata Himel1 dioecious)
GGAGGCGGGTGGGACACCAGCAGCGACGAAGGAGCAACAGGAACGAAGCA
GGCCGGAGGGTTAAGGATGCGCGATTTCGAGCGAGGCACCGCGAAAAACA
CGCGCAAGGCTTTGTTGAAGAATGACGTCGAACTTTGTCGTCCTCCTTCC
CCTCAGGAGTTCGATGGTGGTAGGGATCACGACTCCGACGACGAGAGCGG
GAGTAGATGCCATGCCCCACGTTTTGTTCCCGGCGATCCTTTCGCCAACG
AGGAGGCTGACACTGAGGCCTGGGCAAAGCACTTCACCTATTTATCAATA
TTTCCTTCCGCAAGCCTTTCGTCAGACTCGCGAGCTCTCCGCGAAGAGGA
CAACCGTAGAAATGGTGGCTGTAATGAAGCGTTGCGAGTGGTTTCTGAAG
CGCCGGGAGCTTCCCGCGTCGAGGGGGTGGACGACGGGGCCAAAAGAGAG
GAAGAGGAAGTCGTCCTGGCGAAGCACGGCATTTACGAAGAGTACTTGGC
GTACGACTGTCGGCCTCCCCGGGACGAAATCGAAGAAGGGTGTAGGGATG
AGGCAAAGTCGGGGATGAGGCTGAGTGCCGTAGATTTAACGCGTCGCAGC
AAGCTGCCTGCAAGCGTGCGGCTTCGCACACCCCAACGCGCATTGAGAGA
AGAGGTCATGGATCGCCTCTTTGACGAGTTGTGGGAGCGCCTCGCACCCG
ATTTACTA
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Coding sequence (CDS) from alignment at H-elongata_contig7003:9667..10374-

>mRNA_H-elongata_contig7003.14659.1 ID=mRNA_H-elongata_contig7003.14659.1|Name=mRNA_H-elongata_contig7003.14659.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1416bp|location=Sequence derived from alignment at H-elongata_contig7003:9667..10374- (Himanthalia elongata Himel1 dioecious)
GGAGGCGGGTGGGACACCAGCAGCGACGAAGGAGCAACAGGAACGAAGCA
GGCCGGAGGGTTAAGGATGCGCGATTTCGAGCGAGGCACCGCGAAAAACA
CGCGCAAGGCTTTGTTGAAGAATGACGTCGAACTTTGTCGTCCTCCTTCC
CCTCAGGAGTTCGATGGTGGTAGGGATCACGACTCCGACGACGAGAGCGG
GAGTAGATGCCATGCCCCACGTTTTGTTCCCGGCGATCCTTTCGCCAACG
AGGAGGCTGACACTGAGGCCTGGGCAAAGCACTTCACCTATTTATCAATA
TTTCCTTCCGCAAGCCTTTCGTCAGACTCGCGAGCTCTCCGCGAAGAGGA
CAACCGTAGAAATGGTGGCTGTAATGAAGCGTTGCGAGTGGTTTCTGAAG
CGCCGGGAGCTTCCCGCGTCGAGGGGGTGGACGACGGGGCCAAAAGAGAG
GAAGAGGAAGTCGTCCTGGCGAAGCACGGCATTTACGAAGAGTACTTGGC
GTACGACTGTCGGCCTCCCCGGGACGAAATCGAAGAAGGGTGTAGGGATG
AGGCAAAGTCGGGGATGAGGCTGAGTGCCGTAGATTTAACGCGTCGCAGC
AAGCTGCCTGCAAGCGTGCGGCTTCGCACACCCCAACGCGCATTGAGAGA
AGAGGTCATGGATCGCCTCTTTGACGAGTTGTGGGAGCGCCTCGCACCCG
ATTTACTAGGAGGCGGGTGGGACACCAGCAGCGACGAAGGAGCAACAGGA
ACGAAGCAGGCCGGAGGGTTAAGGATGCGCGATTTCGAGCGAGGCACCGC
GAAAAACACGCGCAAGGCTTTGTTGAAGAATGACGTCGAACTTTGTCGTC
CTCCTTCCCCTCAGGAGTTCGATGGTGGTAGGGATCACGACTCCGACGAC
GAGAGCGGGAGTAGATGCCATGCCCCACGTTTTGTTCCCGGCGATCCTTT
CGCCAACGAGGAGGCTGACACTGAGGCCTGGGCAAAGCACTTCACCTATT
TATCAATATTTCCTTCCGCAAGCCTTTCGTCAGACTCGCGAGCTCTCCGC
GAAGAGGACAACCGTAGAAATGGTGGCTGTAATGAAGCGTTGCGAGTGGT
TTCTGAAGCGCCGGGAGCTTCCCGCGTCGAGGGGGTGGACGACGGGGCCA
AAAGAGAGGAAGAGGAAGTCGTCCTGGCGAAGCACGGCATTTACGAAGAG
TACTTGGCGTACGACTGTCGGCCTCCCCGGGACGAAATCGAAGAAGGGTG
TAGGGATGAGGCAAAGTCGGGGATGAGGCTGAGTGCCGTAGATTTAACGC
GTCGCAGCAAGCTGCCTGCAAGCGTGCGGCTTCGCACACCCCAACGCGCA
TTGAGAGAAGAGGTCATGGATCGCCTCTTTGACGAGTTGTGGGAGCGCCT
CGCACCCGATTTACTA
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