mRNA_H-elongata_contig7003.14658.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7003.14658.1
Unique NamemRNA_H-elongata_contig7003.14658.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7003.14658.1 vs. uniprot
Match: D8LQ20_ECTSI (Proteasome subunit alpha type n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ20_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 3.740e-37
Identity = 67/80 (83.75%), Postives = 76/80 (95.00%), Query Frame = 1
Query:    1 AGKSLLKSDYEEDASVEACLKLAVKVLNKTMDSTTPTPEKMEFTTITRVNGKIVHKILPDEETDKILKEVAAEVSSQGDV 240
            AGK+LLK+DY E++SV+ CLKLAVKVLNKTMDSTTP+PEKMEFTTITRVNGKIVHKIL DEE+DKILKEVAAE ++QGDV
Sbjct:  170 AGKALLKTDYVEESSVDECLKLAVKVLNKTMDSTTPSPEKMEFTTITRVNGKIVHKILTDEESDKILKEVAAETATQGDV 249          
BLAST of mRNA_H-elongata_contig7003.14658.1 vs. uniprot
Match: A0A6V1N066_HETAK (Proteasome subunit alpha type n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1N066_HETAK)

HSP 1 Score: 116 bits (290), Expect = 2.150e-30
Identity = 57/80 (71.25%), Postives = 71/80 (88.75%), Query Frame = 1
Query:    1 AGKSLLKSDYEEDASVEACLKLAVKVLNKTMDSTTPTPEKMEFTTITRVNGKIVHKILPDEETDKILKEVAAEVSSQGDV 240
            AGKSLLK++YE+D++VE CLKLA KVLNKTMD+TTP+PEKMEF T+  V+GK+VHKIL D ET KIL+EV AEVS++GD+
Sbjct:  170 AGKSLLKNEYEQDSTVEQCLKLAAKVLNKTMDTTTPSPEKMEFFTLQMVDGKVVHKILTDAETAKILEEVQAEVSTEGDM 249          
BLAST of mRNA_H-elongata_contig7003.14658.1 vs. uniprot
Match: M4C226_HYAAE (Proteasome subunit beta n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C226_HYAAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.030e-22
Identity = 48/81 (59.26%), Postives = 66/81 (81.48%), Query Frame = 1
Query:    1 AGKSLLKSDYEEDASVEACLKLAVKVLNKTMDSTTPTPEKMEFTTITR-VNGKIVHKILPDEETDKILKEVAAEVSSQGDV 240
            A KS+LKSDYE+D +VE  L  +VKV+NKTMDSTTPT EK+EFTT+TR  +GKIVH+ L ++ET+ +L+E AA+ ++ GD+
Sbjct:  160 AAKSMLKSDYEKDMTVEEALVFSVKVMNKTMDSTTPTAEKVEFTTVTRNADGKIVHRQLTEKETEALLQEAAADTAASGDM 240          
BLAST of mRNA_H-elongata_contig7003.14658.1 vs. uniprot
Match: A0A662WSN1_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WSN1_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.340e-22
Identity = 49/81 (60.49%), Postives = 64/81 (79.01%), Query Frame = 1
Query:    1 AGKSLLKSDYEEDASVEACLKLAVKVLNKTMDSTTPTPEKMEFTTITR-VNGKIVHKILPDEETDKILKEVAAEVSSQGDV 240
            A KSLLKSDYEE+ +VE  L  +VKV+ KTMDSTTP+ EK+EFTT+TR  +GKIVH+ L ++ETD +LK  AA+ +S GD+
Sbjct:  140 AAKSLLKSDYEENMTVEEALAFSVKVMGKTMDSTTPSAEKLEFTTVTRNADGKIVHRQLTEKETDALLKAAAADTASSGDM 220          
BLAST of mRNA_H-elongata_contig7003.14658.1 vs. uniprot
Match: A0A836CL31_9STRA (Proteasome subunit alpha type n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL31_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 4.910e-22
Identity = 48/80 (60.00%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    1 AGKSLLKSDYEEDASVEACLKLAVKVLNKTMDSTTPTPEKMEFTTITRVNGKIVHKILPDEETDKILKEVAAEVSSQGDV 240
            AGKSLLK+DY E+ S+E  L+LAVKVL KTMDST P+ +KME TTI RVN K+V+K+L D E  ++LK V ++ S++GDV
Sbjct:  171 AGKSLLKNDYAENMSMEDALQLAVKVLTKTMDSTAPSADKMELTTIQRVNDKVVYKVLDDAEVTRVLKLVESQKSTEGDV 250          
BLAST of mRNA_H-elongata_contig7003.14658.1 vs. uniprot
Match: A0A024URF4_9STRA (Proteasome subunit alpha type n=10 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024URF4_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.080e-20
Identity = 45/81 (55.56%), Postives = 62/81 (76.54%), Query Frame = 1
Query:    1 AGKSLLKSDYEEDASVEACLKLAVKVLNKTMDSTTPTPEKMEFTTITR-VNGKIVHKILPDEETDKILKEVAAEVSSQGDV 240
            A K+LLKSDY+E  +VE  LK +VKV+ KTMD+TTPT EK+EF+T+TR   GK+VH++L   ETD +LK+V A+ +  GD+
Sbjct:  170 AAKNLLKSDYQEGMTVEEALKFSVKVMAKTMDTTTPTAEKLEFSTLTRNEQGKLVHRLLTAAETDALLKDVGAQTADSGDI 250          
BLAST of mRNA_H-elongata_contig7003.14658.1 vs. uniprot
Match: A0A7S2XZ80_9STRA (Proteasome subunit alpha type n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ80_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.880e-20
Identity = 43/80 (53.75%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    1 AGKSLLKSDYEEDASVEACLKLAVKVLNKTMDSTTPTPEKMEFTTITRVNGKIVHKILPDEETDKILKEVAAEVSSQGDV 240
            AGKSLLK++Y +  +V+  L+LA KVLNK+MD+TTP+ EKMEF T+T  +G++ H ILP+ ET KIL++V A  +++GD+
Sbjct:  170 AGKSLLKTEYSDTLTVDEALELAAKVLNKSMDTTTPSAEKMEFFTLTLKDGQVQHSILPEAETTKILEKVQAAATTEGDI 249          
BLAST of mRNA_H-elongata_contig7003.14658.1 vs. uniprot
Match: A0A8K1FDB1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDB1_PYTOL)

HSP 1 Score: 89.7 bits (221), Expect = 4.120e-20
Identity = 47/81 (58.02%), Postives = 63/81 (77.78%), Query Frame = 1
Query:    1 AGKSLLKSDYEEDASVEACLKLAVKVLNKTMDSTTPTPEKMEFTTITR-VNGKIVHKILPDEETDKILKEVAAEVSSQGDV 240
            A KSLLK++Y+E+ +V   LK AVKV++KTMDST+ + EK+EFTT+TR  NGK+VH+ L   ETD +LKEV AE +S GD+
Sbjct:  170 AAKSLLKNEYDENLNVSDALKFAVKVMSKTMDSTSLSAEKLEFTTVTRDENGKVVHRQLTQAETDALLKEVEAEKASAGDI 250          
BLAST of mRNA_H-elongata_contig7003.14658.1 vs. uniprot
Match: A0A7S2FKK0_9STRA (Proteasome subunit alpha type n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FKK0_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 4.330e-20
Identity = 45/80 (56.25%), Postives = 60/80 (75.00%), Query Frame = 1
Query:    1 AGKSLLKSDYEEDASVEACLKLAVKVLNKTMDSTTPTPEKMEFTTITRVNGKIVHKILPDEETDKILKEVAAEVSSQGDV 240
            AGK LLK++YEE A+V   LKLA KVL KTMD+T+ T EK+EF  +T+  GK+V +ILP+ ET  +L  VAA+ S++GDV
Sbjct:  194 AGKGLLKNEYEETATVSDALKLAAKVLQKTMDATSATAEKVEFMVLTKEGGKLVQRILPESETTAVLAAVAADASNEGDV 273          
BLAST of mRNA_H-elongata_contig7003.14658.1 vs. uniprot
Match: A0A0W8DG73_PHYNI (Sodium/potassium-transporting ATPase subunit alpha-2 n=9 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DG73_PHYNI)

HSP 1 Score: 92.0 bits (227), Expect = 6.250e-20
Identity = 46/81 (56.79%), Postives = 66/81 (81.48%), Query Frame = 1
Query:    1 AGKSLLKSDYEEDASVEACLKLAVKVLNKTMDSTTPTPEKMEFTTITR-VNGKIVHKILPDEETDKILKEVAAEVSSQGDV 240
            A KS+LKSDYEE  +VE  L  +VKV+NKTMDST+P+ EK+EFTT+TR  +GKIVH+ L ++ET+++L++ AA+ +S GD+
Sbjct:  611 AAKSMLKSDYEEGMTVEDALAFSVKVMNKTMDSTSPSAEKLEFTTVTRNPDGKIVHRQLTEKETEELLQKAAADTASSGDM 691          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7003.14658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ20_ECTSI3.740e-3783.75Proteasome subunit alpha type n=1 Tax=Ectocarpus s... [more]
A0A6V1N066_HETAK2.150e-3071.25Proteasome subunit alpha type n=1 Tax=Heterosigma ... [more]
M4C226_HYAAE1.030e-2259.26Proteasome subunit beta n=1 Tax=Hyaloperonospora a... [more]
A0A662WSN1_9STRA1.340e-2260.49Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A836CL31_9STRA4.910e-2260.00Proteasome subunit alpha type n=1 Tax=Tribonema mi... [more]
A0A024URF4_9STRA2.080e-2055.56Proteasome subunit alpha type n=10 Tax=Saprolegnia... [more]
A0A7S2XZ80_9STRA2.880e-2053.75Proteasome subunit alpha type n=1 Tax=Fibrocapsa j... [more]
A0A8K1FDB1_PYTOL4.120e-2058.02Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2FKK0_9STRA4.330e-2056.25Proteasome subunit alpha type n=1 Tax=Florenciella... [more]
A0A0W8DG73_PHYNI6.250e-2056.79Sodium/potassium-transporting ATPase subunit alpha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7003contigH-elongata_contig7003:8081..9114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.8
Seed ortholog evalue1.8e-29
Seed eggNOG ortholog2880.D8LQ20
KEGG koko:K02728
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
GOsGO:0000502,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005829,GO:0005839,GO:0005840,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010035,GO:0010038,GO:0010498,GO:0010499,GO:0012505,GO:0016020,GO:0016043,GO:0019538,GO:0019773,GO:0019941,GO:0022607,GO:0022626,GO:0030163,GO:0031597,GO:0032991,GO:0034515,GO:0034622,GO:0042175,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043248,GO:0043632,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046686,GO:0050896,GO:0051603,GO:0065003,GO:0071704,GO:0071840,GO:0080129,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369,GO:1990904
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsCOG0638@1,KOG0178@2759
EC3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProteasome alpha-subunit, N-terminal domain
Ec32 orthologEc-15_001270.1
Exons2
Model size243
Cds size243
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931098.6840699-CDS-H-elongata_contig7003:8080..82361622931098.6840699-CDS-H-elongata_contig7003:8080..8236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7003 8081..8236 +
1691679697.3529992-CDS-H-elongata_contig7003:8080..82361691679697.3529992-CDS-H-elongata_contig7003:8080..8236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7003 8081..8236 +
1622931098.6984873-CDS-H-elongata_contig7003:9027..91141622931098.6984873-CDS-H-elongata_contig7003:9027..9114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7003 9028..9114 +
1691679697.3687432-CDS-H-elongata_contig7003:9027..91141691679697.3687432-CDS-H-elongata_contig7003:9027..9114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7003 9028..9114 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7003.14658.1prot_H-elongata_contig7003.14658.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7003 8081..9114 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7003.14658.1

>prot_H-elongata_contig7003.14658.1 ID=prot_H-elongata_contig7003.14658.1|Name=mRNA_H-elongata_contig7003.14658.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
AGKSLLKSDYEEDASVEACLKLAVKVLNKTMDSTTPTPEKMEFTTITRVN
GKIVHKILPDEETDKILKEVAAEVSSQGDV*
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mRNA from alignment at H-elongata_contig7003:8081..9114+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7003.14658.1 ID=mRNA_H-elongata_contig7003.14658.1|Name=mRNA_H-elongata_contig7003.14658.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1034bp|location=Sequence derived from alignment at H-elongata_contig7003:8081..9114+ (Himanthalia elongata Himel1 dioecious)
GCCGGCAAGTCGCTGCTGAAGAGTGACTACGAGGAAGACGCGAGCGTGGA GGCGTGTTTGAAGCTCGCAGTTAAGGTGCTCAACAAGACCATGGACAGCA CCACCCCCACCCCGGAGAAGATGGAGTTTACCACGATCACTCGCGTCAAC GGCAAGGTGGGGAAGGAGAGGAAGGGAATAAGATACGCCTTAGGACGAAC CCTAAACTACCCCGCCCCCTGTGGGGGATGGTTCTTAGTTGTCCCCGTTT AATCTTGTTGACAACTACGGAACCCCAAGGCAAATGCTTCCAGGCAACAT GTTAGAAAGTTTACTGGTGACATCTTTCTCAAGACGTTGTTTGCAACACA GGCGCGCGTATCGTATACTGTGTGCTCGAAAGGAAGTGAAGGATGAGATT TCCATCCCAGGGTATTTAATATTTAACTTTTATGGGACTGGTGTTTTCGA TTTTTTTTTGTTTATCAAATCCGATCCAATGCAAGCAGGATAAATAAATC GTCGCTGCCCATCGGTCTACTCTTTTTGCAGCAAGTACTCGAAATTCTAT CGTACTCGGTAGATACATATTTTTATATTTTAAATGAACGGCAAGCGATG GTTGTACTACACTAAGAATAAGTTGGCATTACATGGAGGGGGAGAGAGGG GGGGGCACAATGGCATGTCCAGCCAAGGTGATTATTTTTTTTGCTCGCTG ATACTACACGCAACGAACTTGCCGTTTCGTCGCCTACTATATTCGGGGAG GCGATCCGGACTTCCCGGGGCTAAAGATGCTTTCCAAGGACAGCAAGCTG AATCGGATGCGAAGGCCGTTAGCAGCAAGATTGGTTAACCCTTGGACCAC CCCTAACGCGAGCCCTGCTTGTTTCCTTCCTTCTCCCCGTCTCTCCGTAA ATGTCTTTATTATATATATATATATATATATATATATTATCGTCCAGATC GTCCACAAGATCCTTCCGGATGAAGAGACGGACAAGATCCTTAAGGAGGT CGCGGCAGAGGTCTCTTCGCAGGGCGATGTTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig7003:8081..9114+

>mRNA_H-elongata_contig7003.14658.1 ID=mRNA_H-elongata_contig7003.14658.1|Name=mRNA_H-elongata_contig7003.14658.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig7003:8081..9114+ (Himanthalia elongata Himel1 dioecious)
GCCGGCAAGTCGCTGCTGAAGAGTGACTACGAGGAAGACGCGAGCGTGGA
GGCGTGTTTGAAGCTCGCAGTTAAGGTGCTCAACAAGACCATGGACAGCA
CCACCCCCACCCCGGAGAAGATGGAGTTTACCACGATCACTCGCGTCAAC
GGCAAGGCCGGCAAGTCGCTGCTGAAGAGTGACTACGAGGAAGACGCGAG
CGTGGAGGCGTGTTTGAAGCTCGCAGTTAAGGTGCTCAACAAGACCATGG
ACAGCACCACCCCCACCCCGGAGAAGATGGAGTTTACCACGATCACTCGC
GTCAACGGCAAGATCGTCCACAAGATCCTTCCGGATGAAGAGACGGACAA
GATCCTTAAGGAGGTCGCGGCAGAGGTCTCTTCGCAGGGCGATGTTTAGA
TCGTCCACAAGATCCTTCCGGATGAAGAGACGGACAAGATCCTTAAGGAG
GTCGCGGCAGAGGTCTCTTCGCAGGGCGATGTTTAG
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