mRNA_H-elongata_contig70027.14656.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70027.14656.1
Unique NamemRNA_H-elongata_contig70027.14656.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig70027.14656.1 vs. uniprot
Match: D7FS68_ECTSI (RNA-splicing ligase RtcB homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS68_ECTSI)

HSP 1 Score: 609 bits (1571), Expect = 1.670e-216
Identity = 301/344 (87.50%), Postives = 322/344 (93.60%), Query Frame = 1 
Query:    1 EMGMDWSIREGYAWVEDKEHCEEYGRMLQADPTKARPDSFSQDKHVSRRAKIRGLPQLGTLGAGNHYAEIQVVEEMFDKQAAKRMGIDRIGQVCIMIHSGSRGLGHQVATDALVQMEAAMDRDNIRTNDRQLACAKINSKEGQDYLAGMAAAANYAWVNRSTMTFLTRRAFSKQFGKTAKELDMHVVYDVSHNIAKIEQHVLNGELKTLLVHRKGATRAFPPHHPLIPLDYQFMGQPVIVGGTMGTCSYVLTGTQKGMEETFGSTCHGAGRAKSRNESRKTLSYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHEANISKKAVKLRPIAVIKG 1032
            EMG+DWSIREGYAWVEDKEHCEEYGRMLQADPTKA            RRAKIRGLPQLGTLGAGNHYAEIQVVEE++D+QAAK+MGID++ QVCIMIHSGSRGLGHQVATDALV MEAAM RDNI  NDRQLACAKINS+EGQDYLAGMAAAANYAWVNR+ MTFLTRRAFSK+FGKTA+ELDMHVVYDVSHNIAK+EQH+++G+LKTLLVHRKGATRAFPPHHPLIP+DYQF GQPVIVGGTMGTCSYVLTGTQKGM+ETFGSTCHGAGRAKSRNESRKTL YEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCH+A +S +AVKLRPIAVIKG
Sbjct:  173 EMGIDWSIREGYAWVEDKEHCEEYGRMLQADPTKA------------RRAKIRGLPQLGTLGAGNHYAEIQVVEEVYDEQAAKKMGIDKVNQVCIMIHSGSRGLGHQVATDALVLMEAAMARDNIDINDRQLACAKINSQEGQDYLAGMAAAANYAWVNRAMMTFLTRRAFSKKFGKTAEELDMHVVYDVSHNIAKVEQHIVDGDLKTLLVHRKGATRAFPPHHPLIPVDYQFTGQPVIVGGTMGTCSYVLTGTQKGMDETFGSTCHGAGRAKSRNESRKTLDYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGVSMRAVKLRPIAVIKG 504
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BLAST of mRNA_H-elongata_contig70027.14656.1 vs. uniprot
Match: A0A7S3M965_9STRA (RNA-splicing ligase RtcB homolog n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M965_9STRA)

HSP 1 Score: 563 bits (1450), Expect = 8.360e-198
Identity = 274/344 (79.65%), Postives = 306/344 (88.95%), Query Frame = 1 
Query:    1 EMGMDWSIREGYAWVEDKEHCEEYGRMLQADPTKARPDSFSQDKHVSRRAKIRGLPQLGTLGAGNHYAEIQVVEEMFDKQAAKRMGIDRIGQVCIMIHSGSRGLGHQVATDALVQMEAAMDRDNIRTNDRQLACAKINSKEGQDYLAGMAAAANYAWVNRSTMTFLTRRAFSKQFGKTAKELDMHVVYDVSHNIAKIEQHVLNGELKTLLVHRKGATRAFPPHHPLIPLDYQFMGQPVIVGGTMGTCSYVLTGTQKGMEETFGSTCHGAGRAKSRNESRKTLSYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHEANISKKAVKLRPIAVIKG 1032
            EMGMDWS+REGYAW EDKEHCEEYGRMLQADPTK           VS RAK RGLPQLGTLGAGNHY EIQVV+E+FD+QAA RMGID+IGQVCIMIHSGSRGLGHQVATDAL  MEAAM RD + TNDRQLACA+INS EGQDYLAGMAAAANYAWVNRS+MTFL R+AF+KQF +   +LDMHVVYDVSHNIAK+EQH+++G++KTLLVHRKG+TRAFPPHHPLIP+DYQF+GQPV++GGTMGTCSYVLTGTQ GM+ETFGSTCHGAGRA+SRN SR+TL Y+ VL  L  +GI+IRVASPKLVMEEAPESYKDVT+VV+TCH A ISKK +KLRPIAVIKG
Sbjct:  192 EMGMDWSVREGYAWAEDKEHCEEYGRMLQADPTK-----------VSARAKKRGLPQLGTLGAGNHYCEIQVVDEIFDQQAAARMGIDKIGQVCIMIHSGSRGLGHQVATDALTAMEAAMTRDKLVTNDRQLACARINSPEGQDYLAGMAAAANYAWVNRSSMTFLVRQAFAKQFNREPDDLDMHVVYDVSHNIAKVEQHMVDGKMKTLLVHRKGSTRAFPPHHPLIPVDYQFIGQPVLIGGTMGTCSYVLTGTQTGMDETFGSTCHGAGRAQSRNASRRTLEYQEVLDKLASQGIAIRVASPKLVMEEAPESYKDVTQVVDTCHAAGISKKCIKLRPIAVIKG 524
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BLAST of mRNA_H-elongata_contig70027.14656.1 vs. uniprot
Match: RTCB_OSTTA (RNA-splicing ligase RtcB homolog n=6 Tax=Ostreococcus TaxID=70447 RepID=RTCB_OSTTA)

HSP 1 Score: 550 bits (1416), Expect = 8.960e-193
Identity = 266/344 (77.33%), Postives = 302/344 (87.79%), Query Frame = 1 
Query:    1 EMGMDWSIREGYAWVEDKEHCEEYGRMLQADPTKARPDSFSQDKHVSRRAKIRGLPQLGTLGAGNHYAEIQVVEEMFDKQAAKRMGIDRIGQVCIMIHSGSRGLGHQVATDALVQMEAAMDRDNIRTNDRQLACAKINSKEGQDYLAGMAAAANYAWVNRSTMTFLTRRAFSKQFGKTAKELDMHVVYDVSHNIAKIEQHVLNGELKTLLVHRKGATRAFPPHHPLIPLDYQFMGQPVIVGGTMGTCSYVLTGTQKGMEETFGSTCHGAGRAKSRNESRKTLSYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHEANISKKAVKLRPIAVIKG 1032
            EMGMDWS+REGYAW EDKEH EEYGRML ADP+K           VS RAK RGLPQ+GTLGAGNHYAEIQVV+E++D+ AAK+MGIDR+GQVCIMIHSGSRGLGHQVATD+L  ME AM+RD I  NDRQLACA+I+S+EGQDYLA MA AANYAWVNRS+MTFL R+AF+K FGK   ELDMHVVYDVSHNIAK E+H+++GE+KTLLVHRKG+TRAFPPHHPLIP+DYQ+ GQPV++GGTMGTCSY+LTGT+KGM +TFGSTCHGAGRA+SRN+SR  L YE VL  L+ KGI+IRVASPKLVMEEAPESYKDVTEVVNTCH+A ISKK VKLRPIAV+KG
Sbjct:  183 EMGMDWSLREGYAWAEDKEHTEEYGRMLNADPSK-----------VSARAKKRGLPQMGTLGAGNHYAEIQVVDEIYDEFAAKKMGIDRVGQVCIMIHSGSRGLGHQVATDSLTAMERAMERDGIEVNDRQLACARISSQEGQDYLAAMACAANYAWVNRSSMTFLCRQAFAKMFGKPPDELDMHVVYDVSHNIAKFEEHMVDGEMKTLLVHRKGSTRAFPPHHPLIPVDYQYTGQPVLIGGTMGTCSYILTGTEKGMRDTFGSTCHGAGRARSRNKSRHVLQYEDVLEKLKTKGIAIRVASPKLVMEEAPESYKDVTEVVNTCHDAGISKKCVKLRPIAVVKG 515
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BLAST of mRNA_H-elongata_contig70027.14656.1 vs. uniprot
Match: RTCB_MICCC (RNA-splicing ligase RtcB homolog n=3 Tax=Micromonas TaxID=38832 RepID=RTCB_MICCC)

HSP 1 Score: 547 bits (1410), Expect = 6.820e-192
Identity = 267/344 (77.62%), Postives = 300/344 (87.21%), Query Frame = 1 
Query:    1 EMGMDWSIREGYAWVEDKEHCEEYGRMLQADPTKARPDSFSQDKHVSRRAKIRGLPQLGTLGAGNHYAEIQVVEEMFDKQAAKRMGIDRIGQVCIMIHSGSRGLGHQVATDALVQMEAAMDRDNIRTNDRQLACAKINSKEGQDYLAGMAAAANYAWVNRSTMTFLTRRAFSKQFGKTAKELDMHVVYDVSHNIAKIEQHVLNGELKTLLVHRKGATRAFPPHHPLIPLDYQFMGQPVIVGGTMGTCSYVLTGTQKGMEETFGSTCHGAGRAKSRNESRKTLSYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHEANISKKAVKLRPIAVIKG 1032
            EMGMDWS+REGYAW EDKEHCEEYGRML ADP K           VS RAK RGLPQ+GTLGAGNHYAEIQVV+E+FDK AA +MGI+R+GQV +MIHSGSRGLGHQVATDAL +ME AM RD I  NDRQLACAKI+S EGQ+YL+ M+ AANYAWVNRS+MTFL R+AF+K F +T  +LDMHVVYDVSHNIAKIE+HV++GELKTLLVHRKG+TRAFPPHHPLIP+DYQ+ GQPV++GGTMGTCSY+LTGT+KGMEETFGSTCHGAGRA+SRN SR  L Y  VL  L+ KGI+IRVASPKLVMEEAPESYKDVTEVVNTCH+A ISKKAVKLRPIAV+KG
Sbjct:  181 EMGMDWSLREGYAWAEDKEHCEEYGRMLNADPNK-----------VSARAKKRGLPQMGTLGAGNHYAEIQVVDEIFDKHAADKMGIERLGQVMVMIHSGSRGLGHQVATDALTEMERAMARDGILVNDRQLACAKISSPEGQNYLSAMSCAANYAWVNRSSMTFLCRQAFAKMFDQTPDDLDMHVVYDVSHNIAKIEEHVVDGELKTLLVHRKGSTRAFPPHHPLIPVDYQYTGQPVLIGGTMGTCSYILTGTEKGMEETFGSTCHGAGRARSRNNSRNKLDYTEVLEKLKTKGIAIRVASPKLVMEEAPESYKDVTEVVNTCHDAGISKKAVKLRPIAVVKG 513
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BLAST of mRNA_H-elongata_contig70027.14656.1 vs. uniprot
Match: K8FAV9_9CHLO (RNA-splicing ligase RtcB homolog n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8FAV9_9CHLO)

HSP 1 Score: 546 bits (1407), Expect = 3.500e-191
Identity = 266/344 (77.33%), Postives = 305/344 (88.66%), Query Frame = 1 
Query:    1 EMGMDWSIREGYAWVEDKEHCEEYGRMLQADPTKARPDSFSQDKHVSRRAKIRGLPQLGTLGAGNHYAEIQVVEEMFDKQAAKRMGIDRIGQVCIMIHSGSRGLGHQVATDALVQMEAAMDRDNIRTNDRQLACAKINSKEGQDYLAGMAAAANYAWVNRSTMTFLTRRAFSKQFGKTAKELDMHVVYDVSHNIAKIEQHVLNGELKTLLVHRKGATRAFPPHHPLIPLDYQFMGQPVIVGGTMGTCSYVLTGTQKGMEETFGSTCHGAGRAKSRNESRKTLSYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHEANISKKAVKLRPIAVIKG 1032
            EMG+DW +REGYAW+EDKE CEE GRML ADP+K           VS+RAK RGLPQ+GTLGAGNHYAEIQVV+E++D+ AAK+MGID+IGQV +MIHSGSRGLGHQVATDALV+ME AM +D +  NDRQLACA+INS+EG+DYLA MA AANYAWVNR +MTFL R+AF+K F KTA++LDMHVVYDVSHNIAKIE+H+++GELKTLLVHRKG+TRAFPPHHPLIP+DYQ+ GQPV+VGGTMGTCSYVLTGT+KGM ETFGSTCHGAGRA+SR+ SR+ LSYE VL  L+ KGISIRVASPKLVMEEAPESYKDVTEVV+TCH+A ISKK VKLRPIAVIKG
Sbjct:  198 EMGIDWCVREGYAWIEDKERCEENGRMLNADPSK-----------VSQRAKKRGLPQMGTLGAGNHYAEIQVVDEIYDQFAAKKMGIDKIGQVVVMIHSGSRGLGHQVATDALVEMEKAMAKDGLELNDRQLACARINSQEGKDYLAAMACAANYAWVNRQSMTFLCRQAFAKTFNKTAEQLDMHVVYDVSHNIAKIEEHIVDGELKTLLVHRKGSTRAFPPHHPLIPVDYQYTGQPVLVGGTMGTCSYVLTGTEKGMHETFGSTCHGAGRARSRHNSRQKLSYEQVLENLKTKGISIRVASPKLVMEEAPESYKDVTEVVDTCHDAGISKKCVKLRPIAVIKG 530
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BLAST of mRNA_H-elongata_contig70027.14656.1 vs. uniprot
Match: W7TEQ9_9STRA (RNA-splicing ligase RtcB homolog n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEQ9_9STRA)

HSP 1 Score: 545 bits (1405), Expect = 3.530e-191
Identity = 268/344 (77.91%), Postives = 299/344 (86.92%), Query Frame = 1 
Query:    1 EMGMDWSIREGYAWVEDKEHCEEYGRMLQADPTKARPDSFSQDKHVSRRAKIRGLPQLGTLGAGNHYAEIQVVEEMFDKQAAKRMGIDRIGQVCIMIHSGSRGLGHQVATDALVQMEAAMDRDNIRTNDRQLACAKINSKEGQDYLAGMAAAANYAWVNRSTMTFLTRRAFSKQFGKTAKELDMHVVYDVSHNIAKIEQHVLNGELKTLLVHRKGATRAFPPHHPLIPLDYQFMGQPVIVGGTMGTCSYVLTGTQKGMEETFGSTCHGAGRAKSRNESRKTLSYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHEANISKKAVKLRPIAVIKG 1032
            EMGMDWS+REGYAW ED EHCEE GRM QADPTK           V  RAK RGLPQLGTLGAGNHYAEIQVVEE+ D +AA RMGID+IGQVC+MIHSGSRGLGHQVATDALV+ME AM RD I TNDRQLACA+I S EGQ+YLA MAAAAN+AWVNRS+MTFLTR+AF+K F  T  +LDMHV+YDVSHNIAK+E+H+  G  KTLLVHRKG+TRAFPP+HPLIP+DYQF GQPV++GGTMGTCSYVLTGT KG+EETFGSTCHGAGRA+SRN+SRKTL Y  VL  LE+KGISIRVASPKLVMEEAPESYKDVT+VV+TCHEA IS+KA+KLRPIAV+KG
Sbjct:  178 EMGMDWSLREGYAWAEDNEHCEENGRMRQADPTK-----------VGMRAKKRGLPQLGTLGAGNHYAEIQVVEEIHDPRAAARMGIDQIGQVCVMIHSGSRGLGHQVATDALVEMERAMARDGILTNDRQLACARIQSPEGQNYLAAMAAAANFAWVNRSSMTFLTRQAFAKMFEATPDDLDMHVIYDVSHNIAKVEEHMYQGRPKTLLVHRKGSTRAFPPNHPLIPVDYQFTGQPVLIGGTMGTCSYVLTGTDKGLEETFGSTCHGAGRAQSRNKSRKTLEYTEVLAALEEKGISIRVASPKLVMEEAPESYKDVTQVVDTCHEAGISRKAIKLRPIAVVKG 510
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BLAST of mRNA_H-elongata_contig70027.14656.1 vs. uniprot
Match: A0A7T8HKN5_CALRO (tRNA-splicing ligase RtcB -like protein n=1 Tax=Caligus rogercresseyi TaxID=217165 RepID=A0A7T8HKN5_CALRO)

HSP 1 Score: 538 bits (1386), Expect = 7.150e-191
Identity = 263/344 (76.45%), Postives = 299/344 (86.92%), Query Frame = 1 
Query:    1 EMGMDWSIREGYAWVEDKEHCEEYGRMLQADPTKARPDSFSQDKHVSRRAKIRGLPQLGTLGAGNHYAEIQVVEEMFDKQAAKRMGIDRIGQVCIMIHSGSRGLGHQVATDALVQMEAAMDRDNIRTNDRQLACAKINSKEGQDYLAGMAAAANYAWVNRSTMTFLTRRAFSKQFGKTAKELDMHVVYDVSHNIAKIEQHVLNGELKTLLVHRKGATRAFPPHHPLIPLDYQFMGQPVIVGGTMGTCSYVLTGTQKGMEETFGSTCHGAGRAKSRNESRKTLSYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHEANISKKAVKLRPIAVIKG 1032
            EMGMDWS+REGY W EDKEHCEEYGRML ADP             VS RAK RGLPQLGTLGAGNHYAEIQVV+E+FDK AA  MGID++GQ+ +MIH GSRG GHQVATDALVQME AM RDNI  NDRQLACA+I+SKEGQDYL GMAAAAN+AWVNRS+MTFLTR+AF+K F  +  +LDMHV+YDVSHNIAK+E+H+++G+LK+LLVHRKG+TRAFPPHHPLIP+D+Q  GQPV++GGTMG+CSYVLTGT+KGM++TFGSTCHGAGRA SR +SR+ L Y+AVL  LEKKGISIRVASPKLVMEEAPESYKDVT+VVNTCH A ISKKAVKLRPI VIKG
Sbjct:   11 EMGMDWSLREGYVWPEDKEHCEEYGRMLNADPN-----------CVSTRAKRRGLPQLGTLGAGNHYAEIQVVDEIFDKFAASSMGIDQLGQIVVMIHCGSRGFGHQVATDALVQMEKAMKRDNILVNDRQLACARIHSKEGQDYLKGMAAAANFAWVNRSSMTFLTRQAFAKVFDSSPDDLDMHVIYDVSHNIAKMEEHLVDGKLKSLLVHRKGSTRAFPPHHPLIPVDFQLTGQPVLIGGTMGSCSYVLTGTEKGMQQTFGSTCHGAGRAWSRAKSRRNLDYQAVLDDLEKKGISIRVASPKLVMEEAPESYKDVTDVVNTCHAAGISKKAVKLRPIGVIKG 343
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BLAST of mRNA_H-elongata_contig70027.14656.1 vs. uniprot
Match: UPI0009E47FBE (tRNA-splicing ligase RtcB homolog n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E47FBE)

HSP 1 Score: 541 bits (1394), Expect = 1.330e-190
Identity = 263/343 (76.68%), Postives = 299/343 (87.17%), Query Frame = 1 
Query:    4 MGMDWSIREGYAWVEDKEHCEEYGRMLQADPTKARPDSFSQDKHVSRRAKIRGLPQLGTLGAGNHYAEIQVVEEMFDKQAAKRMGIDRIGQVCIMIHSGSRGLGHQVATDALVQMEAAMDRDNIRTNDRQLACAKINSKEGQDYLAGMAAAANYAWVNRSTMTFLTRRAFSKQFGKTAKELDMHVVYDVSHNIAKIEQHVLNGELKTLLVHRKGATRAFPPHHPLIPLDYQFMGQPVIVGGTMGTCSYVLTGTQKGMEETFGSTCHGAGRAKSRNESRKTLSYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHEANISKKAVKLRPIAVIKG 1032
            MGMDWS+REGYAW EDKEHCEEYGRMLQADP K           VS RAK RGLPQLGTLGAGNHYAEIQ+V+E+++  AAK+MG+D  GQVC+MIHSGSRGLGHQVATDALV ME AM RD I  NDRQLACA+I+S+EG+DYL GMAAAANYAWVNRSTMTFLTR+AF K F  T  +LDMHV+YDVSHNIAKIE+H+L+GE KTLLVHRKG+TRAFPPHHPLIP+DYQ  GQPV++GGTMGTCSYVLTGT+KGM++TFG+TCHGAGRA SR +SR+ L Y+ VL  L+ KGISIRVASPKLVMEEAPESYK+VT+VVNTCH+A IS+KA+KLRPIAVIKG
Sbjct:  107 MGMDWSLREGYAWAEDKEHCEEYGRMLQADPDK-----------VSPRAKKRGLPQLGTLGAGNHYAEIQIVDEIYNTYAAKKMGVDHRGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIDVNDRQLACARIHSQEGEDYLKGMAAAANYAWVNRSTMTFLTRQAFGKVFKSTPDDLDMHVIYDVSHNIAKIEEHMLDGEQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMKQTFGTTCHGAGRALSRAKSRRNLDYQEVLDALKSKGISIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISQKAIKLRPIAVIKG 438
[Close]
BLAST of mRNA_H-elongata_contig70027.14656.1 vs. uniprot
Match: A0A7J7JRD7_BUGNE (RNA-splicing ligase RtcB homolog n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JRD7_BUGNE)

HSP 1 Score: 540 bits (1392), Expect = 1.020e-189
Identity = 262/344 (76.16%), Postives = 298/344 (86.63%), Query Frame = 1 
Query:    1 EMGMDWSIREGYAWVEDKEHCEEYGRMLQADPTKARPDSFSQDKHVSRRAKIRGLPQLGTLGAGNHYAEIQVVEEMFDKQAAKRMGIDRIGQVCIMIHSGSRGLGHQVATDALVQMEAAMDRDNIRTNDRQLACAKINSKEGQDYLAGMAAAANYAWVNRSTMTFLTRRAFSKQFGKTAKELDMHVVYDVSHNIAKIEQHVLNGELKTLLVHRKGATRAFPPHHPLIPLDYQFMGQPVIVGGTMGTCSYVLTGTQKGMEETFGSTCHGAGRAKSRNESRKTLSYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHEANISKKAVKLRPIAVIKG 1032
            EMGMDWS+REGYAWVEDKEHCEEYGRMLQADP K           VS RAK RGLPQLGTLGAGNHYAEIQVV+E++DK AA +MG+D  GQVC+MIHSGSRGLGHQVATDALV ME AM RD I  NDRQLACA+I+S EGQDYL GMA+AANYAWVNRS+MTFLTR+AF+K F  T  +LDMHV+YDVSHNIAK+E+H ++G+ +TLLVHRKG+TRAFPPHHPLIP+DYQ  GQPV++GGTMGTCSYVLTGT+ GM ETFGSTCHGAGRA SR +SR+++ +E VL  L++KGISIRVASPKLVMEEAPESYK+VT+VVNTCH A IS+K VKLRPIAVIKG
Sbjct:  144 EMGMDWSLREGYAWVEDKEHCEEYGRMLQADPRK-----------VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKHAASKMGLDYKGQVCVMIHSGSRGLGHQVATDALVSMEKAMKRDQIEVNDRQLACARISSTEGQDYLKGMASAANYAWVNRSSMTFLTRQAFAKMFNSTPDDLDMHVIYDVSHNIAKVEEHFIDGKQRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEVGMSETFGSTCHGAGRALSRAKSRRSIGFEQVLASLQEKGISIRVASPKLVMEEAPESYKNVTDVVNTCHAAGISRKCVKLRPIAVIKG 476
[Close]
BLAST of mRNA_H-elongata_contig70027.14656.1 vs. uniprot
Match: A0A7S0RKU3_9CHLO (RNA-splicing ligase RtcB homolog n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RKU3_9CHLO)

HSP 1 Score: 541 bits (1395), Expect = 1.300e-189
Identity = 266/344 (77.33%), Postives = 295/344 (85.76%), Query Frame = 1 
Query:    1 EMGMDWSIREGYAWVEDKEHCEEYGRMLQADPTKARPDSFSQDKHVSRRAKIRGLPQLGTLGAGNHYAEIQVVEEMFDKQAAKRMGIDRIGQVCIMIHSGSRGLGHQVATDALVQMEAAMDRDNIRTNDRQLACAKINSKEGQDYLAGMAAAANYAWVNRSTMTFLTRRAFSKQFGKTAKELDMHVVYDVSHNIAKIEQHVLNGELKTLLVHRKGATRAFPPHHPLIPLDYQFMGQPVIVGGTMGTCSYVLTGTQKGMEETFGSTCHGAGRAKSRNESRKTLSYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHEANISKKAVKLRPIAVIKG 1032
            EMGMDWS+REGYAW EDKEHCEEYGRML A+P K           VS RAK RGLPQLGTLGAGNHYAEIQVV+E+FDK AA +MGID+IGQVCIMIHSGSRG GHQVATDAL  ME AM    I TNDRQLACA+INS+EGQDYL  MA AANYAWVNRS+MTFLTR+AF+KQF  T  +LDMHVVYDVSHNIAKIE+H+++G  K LLVHRKG+TRAFPPHHPLIP+DYQF GQPV++GGTMGTCSYVLTGT+KGMEETFGSTCHGAGRA+SRN +R  L Y  VL GL++KGI+IRVASPKLVMEEAPESYKDVT VV+TCH A ISKK +KLRPIAV+KG
Sbjct:  181 EMGMDWSLREGYAWAEDKEHCEEYGRMLTANPNK-----------VSSRAKKRGLPQLGTLGAGNHYAEIQVVDEIFDKSAANKMGIDQIGQVCIMIHSGSRGFGHQVATDALSAMERAMAMQGIHTNDRQLACARINSQEGQDYLEAMACAANYAWVNRSSMTFLTRQAFAKQFNCTPDDLDMHVVYDVSHNIAKIEEHMVDGVQKRLLVHRKGSTRAFPPHHPLIPVDYQFTGQPVLIGGTMGTCSYVLTGTEKGMEETFGSTCHGAGRARSRNNARNKLDYTQVLAGLKQKGIAIRVASPKLVMEEAPESYKDVTAVVDTCHMAGISKKTIKLRPIAVVKG 513
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70027.14656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS68_ECTSI1.670e-21687.50RNA-splicing ligase RtcB homolog n=2 Tax=Ectocarpu... [more]
A0A7S3M965_9STRA8.360e-19879.65RNA-splicing ligase RtcB homolog n=1 Tax=Spumella ... [more]
RTCB_OSTTA8.960e-19377.33RNA-splicing ligase RtcB homolog n=6 Tax=Ostreococ... [more]
RTCB_MICCC6.820e-19277.62RNA-splicing ligase RtcB homolog n=3 Tax=Micromona... [more]
K8FAV9_9CHLO3.500e-19177.33RNA-splicing ligase RtcB homolog n=1 Tax=Bathycocc... [more]
W7TEQ9_9STRA3.530e-19177.91RNA-splicing ligase RtcB homolog n=2 Tax=Monodopsi... [more]
A0A7T8HKN5_CALRO7.150e-19176.45tRNA-splicing ligase RtcB -like protein n=1 Tax=Ca... [more]
UPI0009E47FBE1.330e-19076.68tRNA-splicing ligase RtcB homolog n=1 Tax=Orbicell... [more]
A0A7J7JRD7_BUGNE1.020e-18976.16RNA-splicing ligase RtcB homolog n=1 Tax=Bugula ne... [more]
A0A7S0RKU3_9CHLO1.300e-18977.33RNA-splicing ligase RtcB homolog n=1 Tax=Pyramimon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70027contigH-elongata_contig70027:325..2933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score610.9
Seed ortholog evalue3.6e-172
Seed eggNOG ortholog2880.D7FS68
Preferred nameRTCB
KEGG koko:K14415
GOsGO:0000003,GO:0000378,GO:0000394,GO:0000968,GO:0000971,GO:0001701,GO:0001890,GO:0002119,GO:0002164,GO:0003006,GO:0003674,GO:0003824,GO:0003972,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006139,GO:0006388,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0007275,GO:0007276,GO:0007281,GO:0008033,GO:0008092,GO:0008150,GO:0008152,GO:0008380,GO:0008452,GO:0009790,GO:0009791,GO:0009792,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0012505,GO:0016020,GO:0016070,GO:0016874,GO:0016886,GO:0017166,GO:0019219,GO:0019222,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0031323,GO:0031325,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0040025,GO:0042175,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045935,GO:0046483,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048569,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051704,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0071704,GO:0072669,GO:0080090,GO:0090304,GO:0098827,GO:0140098,GO:1901360,GO:1903326,GO:1903328,GO:2000235,GO:2000237
EggNOG free text desc.RNA ligase (ATP) activity
EggNOG OGsCOG1690@1,KOG3833@2759
EC6.5.1.3
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiontRNA-splicing ligase, RtcB
Ec32 orthologEc-01_000760.1
Exons6
Model size1035
Cds size1032
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931098.447223-CDS-H-elongata_contig70027:324..5231622931098.447223-CDS-H-elongata_contig70027:324..523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70027 325..523 -
1691679697.2054887-CDS-H-elongata_contig70027:324..5231691679697.2054887-CDS-H-elongata_contig70027:324..523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70027 325..523 -
1622931098.469241-CDS-H-elongata_contig70027:710..9581622931098.469241-CDS-H-elongata_contig70027:710..958Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70027 711..958 -
1691679697.225735-CDS-H-elongata_contig70027:710..9581691679697.225735-CDS-H-elongata_contig70027:710..958Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70027 711..958 -
1622931098.4847856-CDS-H-elongata_contig70027:1393..15611622931098.4847856-CDS-H-elongata_contig70027:1393..1561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70027 1394..1561 -
1691679697.236219-CDS-H-elongata_contig70027:1393..15611691679697.236219-CDS-H-elongata_contig70027:1393..1561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70027 1394..1561 -
1622931098.499841-CDS-H-elongata_contig70027:2024..21681622931098.499841-CDS-H-elongata_contig70027:2024..2168Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70027 2025..2168 -
1691679697.245004-CDS-H-elongata_contig70027:2024..21681691679697.245004-CDS-H-elongata_contig70027:2024..2168Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70027 2025..2168 -
1622931098.517447-CDS-H-elongata_contig70027:2330..24711622931098.517447-CDS-H-elongata_contig70027:2330..2471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70027 2331..2471 -
1691679697.255626-CDS-H-elongata_contig70027:2330..24711691679697.255626-CDS-H-elongata_contig70027:2330..2471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70027 2331..2471 -
1622931098.5357575-CDS-H-elongata_contig70027:2798..29301622931098.5357575-CDS-H-elongata_contig70027:2798..2930Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70027 2799..2930 -
1691679697.2801037-CDS-H-elongata_contig70027:2798..29301691679697.2801037-CDS-H-elongata_contig70027:2798..2930Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70027 2799..2930 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931098.547595-UTR-H-elongata_contig70027:2930..29331622931098.547595-UTR-H-elongata_contig70027:2930..2933Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70027 2931..2933 -
1691679697.2898219-UTR-H-elongata_contig70027:2930..29331691679697.2898219-UTR-H-elongata_contig70027:2930..2933Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70027 2931..2933 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70027.14656.1prot_H-elongata_contig70027.14656.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70027 325..2930 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70027.14656.1

>prot_H-elongata_contig70027.14656.1 ID=prot_H-elongata_contig70027.14656.1|Name=mRNA_H-elongata_contig70027.14656.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=344bp
MGMDWSIREGYAWVEDKEHCEEYGRMLQADPTKARPDSFSQDKHVSRRAK
IRGLPQLGTLGAGNHYAEIQVVEEMFDKQAAKRMGIDRIGQVCIMIHSGS
RGLGHQVATDALVQMEAAMDRDNIRTNDRQLACAKINSKEGQDYLAGMAA
AANYAWVNRSTMTFLTRRAFSKQFGKTAKELDMHVVYDVSHNIAKIEQHV
LNGELKTLLVHRKGATRAFPPHHPLIPLDYQFMGQPVIVGGTMGTCSYVL
TGTQKGMEETFGSTCHGAGRAKSRNESRKTLSYEAVLGGLEKKGISIRVA
SPKLVMEEAPESYKDVTEVVNTCHEANISKKAVKLRPIAVIKG*
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mRNA from alignment at H-elongata_contig70027:325..2933-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70027.14656.1 ID=mRNA_H-elongata_contig70027.14656.1|Name=mRNA_H-elongata_contig70027.14656.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2609bp|location=Sequence derived from alignment at H-elongata_contig70027:325..2933- (Himanthalia elongata Himel1 dioecious)
GAGATGGGAATGGACTGGTCCATAAGAGAAGGTTACGCGTGGGTGGAAGA
CAAAGAGCACTGCGAGGAATACGGCAGGATGCTGCAGGCTGACCCCACGA
AGGCAAGGCCGGACAGTTTTTCTCAGGACAAGCACGTTCACCAATTATCT
CGTGCTCGATGATACCCTCGACGCCGCTTTCGCAGTGCGACGTGCTGTGC
TGTCGTCGAGATCGTGCAAGGCGTTTTAAGCCGCAAGTTCCAATAGCGCC
CCCGCTAGCTTTCACCGGCAGCATCGATGTAACAATTTCCCCGCGTGGGC
ATGTTTTTGAGAGCAAACGCGATGGGACATTCGATTCCCGTTTCTCAGGA
CCGTTAGGCACGTTGTGGTTACGCCCGGCGCGGTGTCAAGATATATATAT
ATATATACAGATATACATGGTTTATCTTCCACGGGATATGGTCTTGAACT
TGTTTTTTTCAGGTGAGCAGGCGTGCCAAGATTCGGGGGCTGCCCCAGCT
GGGAACGCTCGGCGCGGGCAACCACTATGCCGAGATACAGGTGGTGGAAG
AGATGTTCGACAAACAGGCTGCAAAGAGAATGGGCATCGACCGAATCGGG
CAGGTGAAAGCTGGTGCGCGAGCCCAACTTGATTCATGAGAGAGAGAGAA
AGTGATAACGGAAGGATTTTTAGTTGGATTCTCCCGCGCCGCATGGCTTA
CCATCTGTTACGAGCCGTCTCGGTCGCTTCCTCCGTCATCTTATTTCCTC
TACCTCACCGCACAGGTATGTATTATGATTCACAGTGGAAGCCGAGGCTT
GGGTCACCAGGTGGCGACTGACGCCCTAGTCCAGATGGAGGCGGCCATGG
ACCGAGACAACATCCGGACCAACGATCGCCAGTTGGCCTGCGCGAAGATC
AACAGCAAGGTGTGCAGGGACGGTTGAGTGAGTGTCGTCCCACGACCTGG
TTCGCGCTCTCTTGCATGTGGCTGACGGTAATCGGCGAAGCAGAAGGTGT
AGCGAACGTCGCCGAACGTACGGAAGGCATATTCATAGAAGAACGGTGTT
ATTCTCGCGGGATGGGTGACCAATCAGGTGGCGTGGTAGCCACGACTCGG
CCTAGCACGGTAGCACGCGTCCCTCGTCCTGCAGCATTGGGAAGGTTGTT
TTCCTATGCTCCGACAATATGCCACATCGCGTGTGCGATGCTCACAGGTC
AGCCGTGCGGCCATCTATCCTCACCGAGTTCATAGCCGGTGGTGGGATGG
TATACTTCGTACCCTCCCCCGCCATCCCCTATTCTTTTTTACGCCTCTTT
TTTTTCCATCGACCTATCCCCGTTGAATCTCCGACAAGAACTCCGCGTGT
TTCCGATGCACGATATGTGCAGGAAGGGCAGGACTATCTGGCGGGCATGG
CGGCGGCTGCAAACTATGCGTGGGTGAACCGCTCGACGATGACGTTCCTC
ACGCGTAGGGCGTTCTCGAAGCAGTTCGGGAAGACGGCCAAGGAGCTGGA
CATGCACGTTGTCTACGATGTTTCGCACAACATCGCCAAGGTGCTATAAT
CGCTCGATTCCTGCCTTCAGCATTCCGTTGGCGGACGGTCGGGAGGCCAA
TGGCTTTCAGGACAGATCCCGGCGCGATGAGGTCTCCTTACCCGTTTCCT
CAGGACCTCCGCCAATGTCGAACAAAATACTTCAGTATGTCTCCGGAAGA
TGCTTGCTGACGACGCCTTTCCAGATCCACAGCGCTTTCTTGCTCATACT
AAATGCAAAGCCTCGAGGAAATTATACGAAGTCCCATATTCGGGTAGCCG
GTCATACGCTGCTACCTTCGTACGTTTGCGCGGTTTCTCAGGAGTCGAAC
ACGTCGGGCTCCCGATATTTACTGATGTCGGTTTTTCTGATTATACCAGG
GCGTTCTTAAACAAGAGATCTGACCCACCGAAGGTCCTCGTCCCCTGCCC
GCTGGATTTCCACGCGCGACTACAGATTGAGCAGCACGTGTTGAACGGCG
AACTGAAGACTCTCCTAGTTCACAGGAAGGGTGCTACCCGTGCCTTCCCG
CCGCATCACCCCCTCATTCCTTTGGACTACCAATTCATGGGACAGCCCGT
CATTGTTGGGGGCACCATGGGCACCTGCAGCTACGTGCTGACGGGCACCC
AGAAGGGTATGGAGGAGACGTTCGGGAGCACTTGCCATGGCGCCGGGCGA
GCAAAGAGTAGAAACGAGTCCAGGTGGGAAAAGTCACCACCACCTGTCCC
CGATTGAAGCAGTTATAAATAGAACGTTTAAACCGCACTTCGTTGACAAA
CAGATATATCCAAGGACGGTGGGGATTGGAGCAAAACACTTCATTCGTAG
CGAAATGTGCGGTCGATCCCAGGCTTTCCTTCGTAACCCTTCCCGCCATC
CACATTCCAGGAAAACTCTAAGCTACGAGGCTGTCCTTGGAGGGTTGGAG
AAGAAGGGGATTTCTATTCGAGTGGCTAGTCCCAAGCTCGTGATGGAAGA
GGCTCCGGAGAGTTACAAGGACGTTACCGAGGTGGTTAACACGTGTCACG
AAGCAAACATCTCGAAAAAGGCCGTCAAGCTCAGGCCAATCGCTGTTATC
AAGGGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig70027:325..2933-

>mRNA_H-elongata_contig70027.14656.1 ID=mRNA_H-elongata_contig70027.14656.1|Name=mRNA_H-elongata_contig70027.14656.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2064bp|location=Sequence derived from alignment at H-elongata_contig70027:325..2933- (Himanthalia elongata Himel1 dioecious)
ATGGGAATGGACTGGTCCATAAGAGAAGGTTACGCGTGGGTGGAAGACAA
AGAGCACTGCGAGGAATACGGCAGGATGCTGCAGGCTGACCCCACGAAGG
CAAGGCCGGACAGTTTTTCTCAGGACAAGCACATGGGAATGGACTGGTCC
ATAAGAGAAGGTTACGCGTGGGTGGAAGACAAAGAGCACTGCGAGGAATA
CGGCAGGATGCTGCAGGCTGACCCCACGAAGGCAAGGCCGGACAGTTTTT
CTCAGGACAAGCACGTGAGCAGGCGTGCCAAGATTCGGGGGCTGCCCCAG
CTGGGAACGCTCGGCGCGGGCAACCACTATGCCGAGATACAGGTGGTGGA
AGAGATGTTCGACAAACAGGCTGCAAAGAGAATGGGCATCGACCGAATCG
GGCAGGTGAGCAGGCGTGCCAAGATTCGGGGGCTGCCCCAGCTGGGAACG
CTCGGCGCGGGCAACCACTATGCCGAGATACAGGTGGTGGAAGAGATGTT
CGACAAACAGGCTGCAAAGAGAATGGGCATCGACCGAATCGGGCAGGTAT
GTATTATGATTCACAGTGGAAGCCGAGGCTTGGGTCACCAGGTGGCGACT
GACGCCCTAGTCCAGATGGAGGCGGCCATGGACCGAGACAACATCCGGAC
CAACGATCGCCAGTTGGCCTGCGCGAAGATCAACAGCAAGGTATGTATTA
TGATTCACAGTGGAAGCCGAGGCTTGGGTCACCAGGTGGCGACTGACGCC
CTAGTCCAGATGGAGGCGGCCATGGACCGAGACAACATCCGGACCAACGA
TCGCCAGTTGGCCTGCGCGAAGATCAACAGCAAGGAAGGGCAGGACTATC
TGGCGGGCATGGCGGCGGCTGCAAACTATGCGTGGGTGAACCGCTCGACG
ATGACGTTCCTCACGCGTAGGGCGTTCTCGAAGCAGTTCGGGAAGACGGC
CAAGGAGCTGGACATGCACGTTGTCTACGATGTTTCGCACAACATCGCCA
AGGAAGGGCAGGACTATCTGGCGGGCATGGCGGCGGCTGCAAACTATGCG
TGGGTGAACCGCTCGACGATGACGTTCCTCACGCGTAGGGCGTTCTCGAA
GCAGTTCGGGAAGACGGCCAAGGAGCTGGACATGCACGTTGTCTACGATG
TTTCGCACAACATCGCCAAGATTGAGCAGCACGTGTTGAACGGCGAACTG
AAGACTCTCCTAGTTCACAGGAAGGGTGCTACCCGTGCCTTCCCGCCGCA
TCACCCCCTCATTCCTTTGGACTACCAATTCATGGGACAGCCCGTCATTG
TTGGGGGCACCATGGGCACCTGCAGCTACGTGCTGACGGGCACCCAGAAG
GGTATGGAGGAGACGTTCGGGAGCACTTGCCATGGCGCCGGGCGAGCAAA
GAGTAGAAACGAGTCCAGATTGAGCAGCACGTGTTGAACGGCGAACTGAA
GACTCTCCTAGTTCACAGGAAGGGTGCTACCCGTGCCTTCCCGCCGCATC
ACCCCCTCATTCCTTTGGACTACCAATTCATGGGACAGCCCGTCATTGTT
GGGGGCACCATGGGCACCTGCAGCTACGTGCTGACGGGCACCCAGAAGGG
TATGGAGGAGACGTTCGGGAGCACTTGCCATGGCGCCGGGCGAGCAAAGA
GTAGAAACGAGTCCAGGAAAACTCTAAGCTACGAGGCTGTCCTTGGAGGG
TTGGAGAAGAAGGGGATTTCTATTCGAGTGGCTAGTCCCAAGCTCGTGAT
GGAAGAGGCTCCGGAGAGTTACAAGGACGTTACCGAGGTGGTTAACACGT
GTCACGAAGCAAACATCTCGAAAAAGGCCGTCAAGCTCAGGCCAATCGCT
GTTATCAAGGGCTGAGAAAACTCTAAGCTACGAGGCTGTCCTTGGAGGGT
TGGAGAAGAAGGGGATTTCTATTCGAGTGGCTAGTCCCAAGCTCGTGATG
GAAGAGGCTCCGGAGAGTTACAAGGACGTTACCGAGGTGGTTAACACGTG
TCACGAAGCAAACATCTCGAAAAAGGCCGTCAAGCTCAGGCCAATCGCTG
TTATCAAGGGCTGA
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