mRNA_H-elongata_contig70003.14650.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig70003.14650.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 8.910e-16 Identity = 42/117 (35.90%), Postives = 66/117 (56.41%), Query Frame = 2
Query: 8 FLNVEEEVYIKIDPGYEICDECGVPFAVKFKKHLYSLQQSPKIWFGIMDHHL*NIRFRSLFSAPCVYTFEGNTGFAILPLCVNDVRLVGINKQQLVKLKNILTDRFEMTNFGDVSKV 358
+ ++ E V+++ PG+E+ D+ G ++ +K LY L QSP WF +D L I F L S CVY ++ + L L V+D+ L G N + + +K LT RF+MT+ G+V V
Sbjct: 575 YADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLV 691
BLAST of mRNA_H-elongata_contig70003.14650.1 vs. uniprot
Match: A0A6H5K066_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K066_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 4.870e-15 Identity = 42/120 (35.00%), Postives = 66/120 (55.00%), Query Frame = 2
Query: 8 FLNV--EEEVYIKIDPGYEICDEC-GVPFAVKFKKHLYSLQQSPKIWFGIMDHHL*NIRFRSLFSAPCVYTFEGNTGFAILPLCVNDVRLVGINKQQLVKLKNILTDRFEMTNFGDVSKV 358
FLN + +VY++ PG + G P K ++ LY L QSP +W +D L ++ S PCVY + IL + V+D+ ++G ++Q + + K LTDRFEMT+ G+V +V
Sbjct: 92 FLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILIIGGDQQLVDQKKKELTDRFEMTDMGEVKRV 211
BLAST of mRNA_H-elongata_contig70003.14650.1 vs. uniprot
Match: A0A6H5KTY2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY2_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 7.470e-15 Identity = 41/120 (34.17%), Postives = 65/120 (54.17%), Query Frame = 2
Query: 8 FLNV--EEEVYIKIDPGYEICDEC-GVPFAVKFKKHLYSLQQSPKIWFGIMDHHL*NIRFRSLFSAPCVYTFEGNTGFAILPLCVNDVRLVGINKQQLVKLKNILTDRFEMTNFGDVSKV 358
FLN + +VY++ PG + G P K ++ LY L QSP +W +D L ++ S PCVY + IL + V+D+ + G ++Q + + K LTDRFEMT+ G+V ++
Sbjct: 300 FLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNSIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRI 419
BLAST of mRNA_H-elongata_contig70003.14650.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 2.720e-14 Identity = 41/120 (34.17%), Postives = 65/120 (54.17%), Query Frame = 2
Query: 8 FLNV--EEEVYIKIDPGYEICDEC-GVPFAVKFKKHLYSLQQSPKIWFGIMDHHL*NIRFRSLFSAPCVYTFEGNTGFAILPLCVNDVRLVGINKQQLVKLKNILTDRFEMTNFGDVSKV 358
FLN + +VY++ PG + G P K ++ LY L QSP +W +D L ++ S PCVY + IL + V+D+ + G ++Q + + K LTDRFEMT+ G+V ++
Sbjct: 456 FLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRI 575
BLAST of mRNA_H-elongata_contig70003.14650.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 3.710e-14 Identity = 40/120 (33.33%), Postives = 65/120 (54.17%), Query Frame = 2
Query: 8 FLNV--EEEVYIKIDPGYEICDEC-GVPFAVKFKKHLYSLQQSPKIWFGIMDHHL*NIRFRSLFSAPCVYTFEGNTGFAILPLCVNDVRLVGINKQQLVKLKNILTDRFEMTNFGDVSKV 358
FLN + +VY++ PG + G P K ++ LY L QSP +W +D + ++ S PCVY + IL + V+D+ + G ++Q + + K LTDRFEMT+ G+V ++
Sbjct: 681 FLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESITAFGWKRTQSDPCVYAYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRI 800
BLAST of mRNA_H-elongata_contig70003.14650.1 vs. uniprot
Match: A0A6H5KS50_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS50_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 6.760e-14 Identity = 44/122 (36.07%), Postives = 68/122 (55.74%), Query Frame = 2
Query: 8 FLNV--EEEVYIKIDPGYEICDEC-GVPFAVKFKKHLYSLQQSPKIWFGIMDHHL*NIRFRSLFSAPCVYTF--EGNTGFAILPLCVNDVRLVGINKQQLVKLKNILTDRFEMTNFGDVSKV 358
FLN + +VY++ PG + G P K ++ LY L QSP +W +D L ++ S PCVY GNT IL +CV+D+ + G ++Q + + K LT+RFEMT+ G+V ++
Sbjct: 399 FLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVCLTSGNT-IVILTVCVDDILITGGDQQLVDQPKKELTNRFEMTDMGEVKRI 519
BLAST of mRNA_H-elongata_contig70003.14650.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 8.760e-14 Identity = 41/120 (34.17%), Postives = 64/120 (53.33%), Query Frame = 2
Query: 8 FLNV--EEEVYIKIDPGYEICDEC-GVPFAVKFKKHLYSLQQSPKIWFGIMDHHL*NIRFRSLFSAPCVYTFEGNTGFAILPLCVNDVRLVGINKQQLVKLKNILTDRFEMTNFGDVSKV 358
FLN + VY++ PG + G P K ++ LY L QSP +W +D L ++ S PCVY + IL + V+D+ + G ++Q + + K LTDRFEMT+ G+V ++
Sbjct: 92 FLNALCDRYVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRI 211
BLAST of mRNA_H-elongata_contig70003.14650.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 2.350e-13 Identity = 40/120 (33.33%), Postives = 65/120 (54.17%), Query Frame = 2
Query: 8 FLNV--EEEVYIKIDPGYEICDEC-GVPFAVKFKKHLYSLQQSPKIWFGIMDHHL*NIRFRSLFSAPCVYTFEGNTGFAILPLCVNDVRLVGINKQQLVKLKNILTDRFEMTNFGDVSKV 358
FLN + +VY++ PG + G P K ++ LY L QS +W +D L + ++ S PCVY + IL + V+D+ + G ++Q + + K LTDRFEMT+ G+V ++
Sbjct: 300 FLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSHALWNDTLDESLTVLGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRI 419
BLAST of mRNA_H-elongata_contig70003.14650.1 vs. uniprot
Match: A0A6H5JDU8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU8_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 3.120e-13 Identity = 42/120 (35.00%), Postives = 63/120 (52.50%), Query Frame = 2
Query: 8 FLNV--EEEVYIKIDPGYEICDEC-GVPFAVKFKKHLYSLQQSPKIWFGIMDHHL*NIRFRSLFSAPCVYTFEGNTGFAILPLCVNDVRLVGINKQQLVKLKNILTDRFEMTNFGDVSKV 358
FLN + +VY++ PG + G P K ++ LY L QSP +W ++ L ++ PCVY + IL + V+D+ + G QQLV K LTDRFEMT+ G+V ++
Sbjct: 193 FLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLNESLKVFGWKRTQYDPCVYMYTSGNIIVILTVYVDDILITG-GDQQLVDQKKELTDRFEMTDMGEVKRI 311
BLAST of mRNA_H-elongata_contig70003.14650.1 vs. uniprot
Match: A0A6A3CV50_HIBSY (Chitinase-like protein 1 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3CV50_HIBSY) HSP 1 Score: 74.3 bits (181), Expect = 4.300e-13 Identity = 40/116 (34.48%), Postives = 61/116 (52.59%), Query Frame = 2
Query: 14 NVEEEVYIKIDPGYEICDECGVPFAVKFKKHLYSLQQSPKIWFGIMDHHL*NIRFRSLFSAPCVY-TFEGNTGFAILPLCVNDVRLVGINKQQLVKLKNILTDRFEMTNFGDVSKV 358
N+EEE+Y+ G+E E + K LY L+Q+P+ W+ D + + + L + PC Y G+ F IL V+D+ +VG NK + +LK L FEM NFG +K+
Sbjct: 105 NLEEEIYMLQPEGFE---EKEKNLVCRLNKSLYGLKQAPRCWYNRFDSFIMCLGYNRLNADPCAYFKRSGDNDFVILLFYVDDILIVGPNKDHIEELKAQLAREFEMKNFGSANKI 217 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70003.14650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig70003.14650.1 >prot_H-elongata_contig70003.14650.1 ID=prot_H-elongata_contig70003.14650.1|Name=mRNA_H-elongata_contig70003.14650.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp HELPQCRGGGLHQDRSRIRDLRRVWSSLCREIQETPLQSPTEPKDLVWYYback to top mRNA from alignment at H-elongata_contig70003:1872..2232- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig70003.14650.1 ID=mRNA_H-elongata_contig70003.14650.1|Name=mRNA_H-elongata_contig70003.14650.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=361bp|location=Sequence derived from alignment at H-elongata_contig70003:1872..2232- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig70003:1872..2232- >mRNA_H-elongata_contig70003.14650.1 ID=mRNA_H-elongata_contig70003.14650.1|Name=mRNA_H-elongata_contig70003.14650.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig70003:1872..2232- (Himanthalia elongata Himel1 dioecious)back to top |