mRNA_H-elongata_contig69982.14645.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69982.14645.1
Unique NamemRNA_H-elongata_contig69982.14645.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig69982.14645.1 vs. uniprot
Match: D7FVR3_ECTSI (Dynein light chain n=2 Tax=Stramenopiles TaxID=33634 RepID=D7FVR3_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 5.120e-23
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 DIAAFIKKEFDSKYGAKWHCVVGENFGSFVTHESPGFVYLYRGKVAVLLFKAG 159
            DIAAFIKKEFD KY A WHC+VG NFGS+VTHE+  F+Y Y G+VAVLLFK+G
Sbjct:   37 DIAAFIKKEFDKKYSATWHCIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 89
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BLAST of mRNA_H-elongata_contig69982.14645.1 vs. uniprot
Match: A0A7E6EHN1_OCTVU (Dynein light chain n=1 Tax=Octopus vulgaris TaxID=6645 RepID=A0A7E6EHN1_OCTVU)

HSP 1 Score: 90.9 bits (224), Expect = 1.030e-22
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 DIAAFIKKEFDSKYGAKWHCVVGENFGSFVTHESPGFVYLYRGKVAVLLFKAG 159
            DIAA+IKKEFD KY A WHCVVG NFGS+VTHES  F+Y Y G+VA+LLFK+G
Sbjct:   37 DIAAYIKKEFDKKYSATWHCVVGRNFGSYVTHESNHFIYFYCGQVAILLFKSG 89
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BLAST of mRNA_H-elongata_contig69982.14645.1 vs. uniprot
Match: V4A4I7_LOTGI (Dynein light chain n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4A4I7_LOTGI)

HSP 1 Score: 90.5 bits (223), Expect = 1.470e-22
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 DIAAFIKKEFDSKYGAKWHCVVGENFGSFVTHESPGFVYLYRGKVAVLLFKAG 159
            DIAAF+KKEFD KY   WHC+VG NFGS+VTHE+  F+Y Y G+VAVLLFK+G
Sbjct:   37 DIAAFVKKEFDKKYNPTWHCIVGRNFGSYVTHETKNFIYFYSGQVAVLLFKSG 89
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BLAST of mRNA_H-elongata_contig69982.14645.1 vs. uniprot
Match: A0A7E6EHH8_OCTVU (Dynein light chain n=1 Tax=Octopus vulgaris TaxID=6645 RepID=A0A7E6EHH8_OCTVU)

HSP 1 Score: 90.5 bits (223), Expect = 1.470e-22
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 DIAAFIKKEFDSKYGAKWHCVVGENFGSFVTHESPGFVYLYRGKVAVLLFKAG 159
            DIAA+IKKEFD K+ A WHCVVG NFGS+VTHES  FVY Y G+VA+LLFK+G
Sbjct:   37 DIAAYIKKEFDKKHSATWHCVVGRNFGSYVTHESKNFVYFYCGQVAILLFKSG 89
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BLAST of mRNA_H-elongata_contig69982.14645.1 vs. uniprot
Match: A0A2R5GEW0_9STRA (Dynein light chain n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GEW0_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.470e-22
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 DIAAFIKKEFDSKYGAKWHCVVGENFGSFVTHESPGFVYLYRGKVAVLLFKAG 159
            DIAAFIKKEFD KYG  WHC+VG NFGS+VTHE+  F+YLY  ++A+LLFK+G
Sbjct:   37 DIAAFIKKEFDKKYGPTWHCIVGRNFGSYVTHETKHFIYLYLSQIAILLFKSG 89
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BLAST of mRNA_H-elongata_contig69982.14645.1 vs. uniprot
Match: A0A183SDG2_SCHSO (Dynein light chain n=2 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183SDG2_SCHSO)

HSP 1 Score: 91.3 bits (225), Expect = 1.910e-22
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 DIAAFIKKEFDSKYGAKWHCVVGENFGSFVTHESPGFVYLYRGKVAVLLFKAG 159
            DIAA+IKKEFD KY   WHC+VG NFGS+VTHES  F+YLY G+VA+LLFK+G
Sbjct:   72 DIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHESKHFIYLYMGQVAILLFKSG 124
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BLAST of mRNA_H-elongata_contig69982.14645.1 vs. uniprot
Match: A0A0M5IY90_DROBS (Dynein light chain n=2 Tax=Pancrustacea TaxID=197562 RepID=A0A0M5IY90_DROBS)

HSP 1 Score: 90.1 bits (222), Expect = 2.090e-22
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 DIAAFIKKEFDSKYGAKWHCVVGENFGSFVTHESPGFVYLYRGKVAVLLFKAG 159
            DIAAFIKKEFD KY   WHC+VG NFGS+VTHE+  F+Y Y G+VAVLLFK+G
Sbjct:   37 DIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRNFIYFYLGQVAVLLFKSG 89
[Close]
BLAST of mRNA_H-elongata_contig69982.14645.1 vs. uniprot
Match: UPI001EE6360C (dynein light chain 2, cytoplasmic-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE6360C)

HSP 1 Score: 90.1 bits (222), Expect = 2.090e-22
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 DIAAFIKKEFDSKYGAKWHCVVGENFGSFVTHESPGFVYLYRGKVAVLLFKAG 159
            DIAAFIKKEFD KY   WHC+VG NFGS+VTHE+  FVY Y G+VAVLLFK+G
Sbjct:   37 DIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFVYFYLGQVAVLLFKSG 89
[Close]
BLAST of mRNA_H-elongata_contig69982.14645.1 vs. uniprot
Match: Q8T3S8_BRABE (Dynein light chain (Fragment) n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=Q8T3S8_BRABE)

HSP 1 Score: 89.7 bits (221), Expect = 2.650e-22
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 DIAAFIKKEFDSKYGAKWHCVVGENFGSFVTHESPGFVYLYRGKVAVLLFKAG 159
            DIAAFIKKEFD KY   WHC+VG NFGS+VTHE+  F+Y Y G+VAVLLFK+G
Sbjct:   33 DIAAFIKKEFDEKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 85
[Close]
BLAST of mRNA_H-elongata_contig69982.14645.1 vs. uniprot
Match: C1ML17_MICPC (Dynein light chain n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1ML17_MICPC)

HSP 1 Score: 89.7 bits (221), Expect = 2.960e-22
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 DIAAFIKKEFDSKYGAKWHCVVGENFGSFVTHESPGFVYLYRGKVAVLLFKAG 159
            DIAAFIKKEFD KY   WHC+VG NFGS+VTHE+  F+Y Y G+VAVLLFK+G
Sbjct:   37 DIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 89
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69982.14645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVR3_ECTSI5.120e-2373.58Dynein light chain n=2 Tax=Stramenopiles TaxID=336... [more]
A0A7E6EHN1_OCTVU1.030e-2273.58Dynein light chain n=1 Tax=Octopus vulgaris TaxID=... [more]
V4A4I7_LOTGI1.470e-2269.81Dynein light chain n=1 Tax=Lottia gigantea TaxID=2... [more]
A0A7E6EHH8_OCTVU1.470e-2273.58Dynein light chain n=1 Tax=Octopus vulgaris TaxID=... [more]
A0A2R5GEW0_9STRA1.470e-2269.81Dynein light chain n=1 Tax=Hondaea fermentalgiana ... [more]
A0A183SDG2_SCHSO1.910e-2271.70Dynein light chain n=2 Tax=Schistocephalus solidus... [more]
A0A0M5IY90_DROBS2.090e-2271.70Dynein light chain n=2 Tax=Pancrustacea TaxID=1975... [more]
UPI001EE6360C2.090e-2273.58dynein light chain 2, cytoplasmic-like n=1 Tax=Hal... [more]
Q8T3S8_BRABE2.650e-2271.70Dynein light chain (Fragment) n=1 Tax=Branchiostom... [more]
C1ML17_MICPC2.960e-2271.70Dynein light chain n=2 Tax=Micromonas pusilla TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69982contigH-elongata_contig69982:1137..2144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue8.9e-17
Seed eggNOG ortholog2880.D7FVR3
Preferred nameDYNLL1
KEGG koko:K10418
KEGG Pathwayko04962,map04962
GOsGO:0000003,GO:0000086,GO:0000278,GO:0000775,GO:0000776,GO:0001505,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0002478,GO:0002495,GO:0002504,GO:0002791,GO:0002793,GO:0003006,GO:0003674,GO:0003824,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005739,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005868,GO:0005875,GO:0005886,GO:0005929,GO:0006807,GO:0006809,GO:0006810,GO:0006887,GO:0006888,GO:0006914,GO:0006928,GO:0006955,GO:0006996,GO:0007017,GO:0007018,GO:0007049,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007346,GO:0008022,GO:0008092,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010389,GO:0010563,GO:0010564,GO:0010638,GO:0010646,GO:0010647,GO:0010817,GO:0010970,GO:0012505,GO:0012506,GO:0015629,GO:0015630,GO:0016020,GO:0016043,GO:0016192,GO:0016236,GO:0016459,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0019220,GO:0019222,GO:0019882,GO:0019884,GO:0019886,GO:0019899,GO:0019904,GO:0019953,GO:0022402,GO:0022406,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023056,GO:0030030,GO:0030031,GO:0030141,GO:0030154,GO:0030234,GO:0030235,GO:0030286,GO:0030424,GO:0030659,GO:0030667,GO:0030705,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031344,GO:0031346,GO:0031410,GO:0031503,GO:0031982,GO:0032024,GO:0032501,GO:0032502,GO:0032504,GO:0032781,GO:0032838,GO:0032879,GO:0032880,GO:0032940,GO:0032991,GO:0033043,GO:0033267,GO:0034641,GO:0035721,GO:0035735,GO:0035774,GO:0036230,GO:0042073,GO:0042119,GO:0042133,GO:0042136,GO:0042325,GO:0042326,GO:0042623,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043085,GO:0043086,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043299,GO:0043312,GO:0043462,GO:0044085,GO:0044087,GO:0044089,GO:0044092,GO:0044093,GO:0044237,GO:0044248,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044433,GO:0044441,GO:0044444,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0045019,GO:0045055,GO:0045321,GO:0045428,GO:0045505,GO:0045724,GO:0045936,GO:0046209,GO:0046883,GO:0046887,GO:0046903,GO:0046907,GO:0046982,GO:0046983,GO:0048002,GO:0048193,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048609,GO:0048856,GO:0048869,GO:0050708,GO:0050714,GO:0050789,GO:0050790,GO:0050794,GO:0050796,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051336,GO:0051345,GO:0051640,GO:0051641,GO:0051649,GO:0051704,GO:0051726,GO:0051959,GO:0060271,GO:0060341,GO:0060491,GO:0061178,GO:0061919,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070820,GO:0070821,GO:0070925,GO:0071840,GO:0071944,GO:0072593,GO:0072686,GO:0090087,GO:0090276,GO:0090277,GO:0097110,GO:0097458,GO:0097542,GO:0097708,GO:0097711,GO:0098588,GO:0098687,GO:0098772,GO:0098805,GO:0099111,GO:0099503,GO:0099568,GO:0101002,GO:0101003,GO:0120025,GO:0120031,GO:0120032,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:0120111,GO:0140056,GO:1901987,GO:1901990,GO:1902017,GO:1902115,GO:1902117,GO:1902494,GO:1902749,GO:1902855,GO:1902857,GO:1903047,GO:1903409,GO:1903426,GO:1903427,GO:1903530,GO:1903532,GO:1904115,GO:1904406,GO:1904951,GO:2000377,GO:2000378,GO:2000574,GO:2000576,GO:2000580,GO:2000582,GO:2001057
EggNOG free text desc.positive regulation of ATP-dependent microtubule motor activity, plus-end-directed
EggNOG OGsKOG3430@1,KOG3430@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size162
Cds size162
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931097.278174-CDS-H-elongata_contig69982:1136..11661622931097.278174-CDS-H-elongata_contig69982:1136..1166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69982 1137..1166 -
1691679696.6984062-CDS-H-elongata_contig69982:1136..11661691679696.6984062-CDS-H-elongata_contig69982:1136..1166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69982 1137..1166 -
1622931097.294253-CDS-H-elongata_contig69982:2012..21441622931097.294253-CDS-H-elongata_contig69982:2012..2144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69982 2013..2144 -
1691679696.7159283-CDS-H-elongata_contig69982:2012..21441691679696.7159283-CDS-H-elongata_contig69982:2012..2144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69982 2013..2144 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69982.14645.1prot_H-elongata_contig69982.14645.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69982 1137..2144 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69982.14645.1

>prot_H-elongata_contig69982.14645.1 ID=prot_H-elongata_contig69982.14645.1|Name=mRNA_H-elongata_contig69982.14645.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
DIAAFIKKEFDSKYGAKWHCVVGENFGSFVTHESPGFVYLYRGKVAVLLF
KAG*
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mRNA from alignment at H-elongata_contig69982:1137..2144-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69982.14645.1 ID=mRNA_H-elongata_contig69982.14645.1|Name=mRNA_H-elongata_contig69982.14645.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1008bp|location=Sequence derived from alignment at H-elongata_contig69982:1137..2144- (Himanthalia elongata Himel1 dioecious)
GACATCGCGGCGTTCATCAAGAAAGAGTTCGACAGTAAGTACGGCGCCAA
GTGGCACTGCGTCGTCGGGGAAAACTTCGGATCTTTCGTGACGCACGAAT
CGCCGGGTTTCGTATACCTTTATCGAGGAAAGGTGAGGGGAAATGGGCAT
CTAAATTGTGTGATACTTTTCCACATGATTGCTGTCTCCTTGCGGAACAA
GGATATTATTATTTTTTGCATTTTTGTCTTGCTTTTGGGGGGAGATGAGC
GTGCCGCTCTGTATCACGACGACTATAGTCATGTAGCCCTCTCGCTGCTT
TGTGAGTGGTGACGATACACGGTGGAGAGCAGCAAATTGCGTCGGCTTTT
ACCCCAAGAGAAGCCGCTGCCACCTCGGAGAAAACATGCGCGTAACCTGC
CTACCGCGTCCGATATCCTCCGTCTCCTACCCGAGTTCGATTATCGGATT
GGACACCATGAAACTGGTTGTGATCCTAAGGAGGGAGGCAGATGAGGAGA
GAGACAATCACAAAAGGAGACTCGCTCCTGAATACCGTACTCCGTCCTTA
CATGAATAAGTCACAAGCGCTGACCGTAGTTCGAGGAGTGATGAAGGGGT
TACCACGAGCCCTTCTGACTTGCGATGCGTTGAAATAGAAGCCCTCTGAG
TGGTAGTAGTTCTTTTTATGGACTTTGATTAATATTCGAGCTACAGTGGA
GGCTCGCGTCACTTGCTGCACGCTAGAGATGTGCTGGCTGGCTTGAGTTG
TGAGGTAAGAGGGGAGCAGTTCCCACCCTCTTCTAGCTCTTCTAGCCGGT
AAGGGTTTCATCTGAAGAAGACACCTTTACTGGCTTTTTACCACAAGCAA
CGTTCTACGAGACTGTATCATATACCCAGGAAGAAAGAGATTCAGAGTCA
AATACCACCTTCATTTTTCAATGAGATTCTGTCAACCACCGAAGAACCCA
GAACCCCTGTTTTTCATTCCTACCACAGGTGGCTGTGCTCTTGTTCAAGG
CTGGCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig69982:1137..2144-

>mRNA_H-elongata_contig69982.14645.1 ID=mRNA_H-elongata_contig69982.14645.1|Name=mRNA_H-elongata_contig69982.14645.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig69982:1137..2144- (Himanthalia elongata Himel1 dioecious)
GACATCGCGGCGTTCATCAAGAAAGAGTTCGACAGTAAGTACGGCGCCAA
GTGGCACTGCGTCGTCGGGGAAAACTTCGGATCTTTCGTGACGCACGAAT
CGCCGGGTTTCGTATACCTTTATCGAGGAAAGGACATCGCGGCGTTCATC
AAGAAAGAGTTCGACAGTAAGTACGGCGCCAAGTGGCACTGCGTCGTCGG
GGAAAACTTCGGATCTTTCGTGACGCACGAATCGCCGGGTTTCGTATACC
TTTATCGAGGAAAGGTGGCTGTGCTCTTGTTCAAGGCTGGCTAAGTGGCT
GTGCTCTTGTTCAAGGCTGGCTAA
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