mRNA_H-elongata_contig69956.14641.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69956.14641.1
Unique NamemRNA_H-elongata_contig69956.14641.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig69956.14641.1 vs. uniprot
Match: D8LBI1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBI1_ECTSI)

HSP 1 Score: 463 bits (1191), Expect = 4.100e-156
Identity = 281/484 (58.06%), Postives = 330/484 (68.18%), Query Frame = 1 
Query:    1 MLRSGLLRLATHAHVREACGS-IINIRGCGNRMGSRAWLSAMIGGESSGADDPTPAETKLAFTSTVYGKDPAAGSELTASEAAAAENLKRAA----VKPGEAPASRGSDPRAMFDSTLSQQTVDRKAFSDIKREVASGTPDATRVAFRASAYGKDPEMAATLSEKNIVELEELRVKTNICGAASSGVAPIHDSRNMFDSDLAHGSGTTAASVDVNRDVVADTPDVTRIAFRASVYGKDPQAAAELSAQEAAEVEALSKTAARRSDAAGNVAPVHDDRSMFDSDLEHSVGMAAASDSIKRDVTANTPDATRVAFRASVYGKDPQAAVALSEEEAAGVDALLEAAAGVSGASG-AAPVHHDRSMFDSDLVHGVGAADAYDSIKRDVFTDTPEVTRVVFGGSDYGKDPRSMCRTAEEQTAVDRLAARARRESEAEARRSKAPVHNHRSLYDSDLAQGAGVMMEFEAIKREVEPDTPALTRLSFFGST 1434
            MLR G+ R+A +A  ++ C + + N+       G+RAWLSA  GG+SS +DD TP +TKLAF+S+VYGKDPA+G E TA EAAAA  LKR A     + G A A+   D R MFDS+LSQQ  D K    IKR+VA+ TPDATRVAF A+AYGKDPE AA LS +   E+E LR +    G A +  AP+HD RNMFDSDL  G+G+T A   + RDV  DTPD TR+AFRAS YGKDPQ AA LS QEAAEVEAL   A  R  AA   APVHD RSMFDSDL    G    SDSIKR+V+ +TPDATRVAFRASVYGKD QAA ALSE+EAA VD L   A G   +S  AAPVH  RSMFDSDL  G GA    DSIKR V  +TPE TR+VF GSDYGKDPRS+  + +++  +  LA R    + A A    AP+H+ RS++DSDLA+GAG   E  AIKR VE  TPALTRLSFFGST
Sbjct:    1 MLRRGIFRVAVYARSQKTCAAGVKNLPAAA--AGTRAWLSATSGGDSSDSDDVTPPKTKLAFSSSVYGKDPASGGEPTAEEAAAAAQLKREAEAGTAREGAA-AAPVHDNRNMFDSSLSQQAEDGKESGSIKRDVAADTPDATRVAFGATAYGKDPEAAAALSAQEAEEVEALRARAKGDGVAGAAAAPLHDRRNMFDSDLTQGAGSTQAFDAIKRDVKTDTPDATRVAFRASAYGKDPQTAAALSEQEAAEVEALRMRAQGRGAAAA--APVHDSRSMFDSDLTQGAGSTQGSDSIKREVSGDTPDATRVAFRASVYGKDGQAAAALSEQEAAEVDELRVRAHGAGASSADAAPVHDSRSMFDSDLTQGAGAMQGSDSIKRHVAANTPEATRLVFAGSDYGKDPRSVDNSEKKKAEIAALAERVGAGTPAAA---AAPIHHDRSMFDSDLAEGAGAARESTAIKRHVETATPALTRLSFFGST 476
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69956.14641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBI1_ECTSI4.100e-15658.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69956contigH-elongata_contig69956:402..1856 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_003900.1
Exons1
Model size1455
Cds size1455
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931096.8608136-CDS-H-elongata_contig69956:401..18561622931096.8608136-CDS-H-elongata_contig69956:401..1856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69956 402..1856 -
1691679696.5161319-CDS-H-elongata_contig69956:401..18561691679696.5161319-CDS-H-elongata_contig69956:401..1856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69956 402..1856 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69956.14641.1prot_H-elongata_contig69956.14641.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69956 402..1856 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69956.14641.1

>prot_H-elongata_contig69956.14641.1 ID=prot_H-elongata_contig69956.14641.1|Name=mRNA_H-elongata_contig69956.14641.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=485bp
MLRSGLLRLATHAHVREACGSIINIRGCGNRMGSRAWLSAMIGGESSGAD
DPTPAETKLAFTSTVYGKDPAAGSELTASEAAAAENLKRAAVKPGEAPAS
RGSDPRAMFDSTLSQQTVDRKAFSDIKREVASGTPDATRVAFRASAYGKD
PEMAATLSEKNIVELEELRVKTNICGAASSGVAPIHDSRNMFDSDLAHGS
GTTAASVDVNRDVVADTPDVTRIAFRASVYGKDPQAAAELSAQEAAEVEA
LSKTAARRSDAAGNVAPVHDDRSMFDSDLEHSVGMAAASDSIKRDVTANT
PDATRVAFRASVYGKDPQAAVALSEEEAAGVDALLEAAAGVSGASGAAPV
HHDRSMFDSDLVHGVGAADAYDSIKRDVFTDTPEVTRVVFGGSDYGKDPR
SMCRTAEEQTAVDRLAARARRESEAEARRSKAPVHNHRSLYDSDLAQGAG
VMMEFEAIKREVEPDTPALTRLSFFGSTCEFYPS*
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mRNA from alignment at H-elongata_contig69956:402..1856-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69956.14641.1 ID=mRNA_H-elongata_contig69956.14641.1|Name=mRNA_H-elongata_contig69956.14641.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1455bp|location=Sequence derived from alignment at H-elongata_contig69956:402..1856- (Himanthalia elongata Himel1 dioecious)
ATGCTGCGCAGCGGACTTTTGCGGTTGGCTACCCACGCCCATGTGCGAGA
AGCATGCGGTAGCATCATCAATATTAGAGGGTGCGGGAATCGTATGGGAT
CGAGGGCGTGGCTCTCTGCGATGATCGGTGGAGAGAGCAGCGGCGCGGAC
GACCCTACTCCTGCCGAAACGAAGCTGGCGTTCACGTCGACTGTTTATGG
CAAGGATCCCGCGGCGGGATCTGAGCTTACGGCATCTGAGGCAGCTGCCG
CAGAAAATCTTAAGAGGGCAGCGGTCAAACCAGGCGAAGCGCCCGCGTCG
AGAGGCTCTGATCCACGGGCGATGTTCGACTCAACTCTTTCACAGCAGAC
TGTAGATCGAAAGGCGTTCAGCGATATCAAGCGCGAAGTGGCGTCGGGAA
CACCCGACGCAACACGAGTAGCCTTTCGAGCCTCGGCTTATGGAAAAGAT
CCTGAGATGGCCGCGACGCTGTCGGAGAAGAATATCGTAGAGCTGGAGGA
GTTGCGGGTGAAGACAAATATTTGCGGCGCAGCGTCGTCTGGTGTGGCTC
CCATCCACGACAGCAGGAATATGTTCGACTCTGACCTCGCGCACGGCTCT
GGAACCACCGCGGCGTCCGTGGATGTCAACCGCGACGTGGTGGCAGACAC
ACCAGATGTCACGCGAATAGCTTTCCGCGCATCCGTCTACGGAAAGGATC
CTCAGGCGGCTGCCGAGCTCTCGGCGCAGGAGGCGGCCGAAGTCGAGGCT
CTAAGCAAAACGGCTGCACGACGCAGCGATGCTGCCGGGAACGTTGCCCC
TGTCCACGACGACCGTAGCATGTTCGATTCCGATTTGGAGCACAGCGTCG
GGATGGCGGCGGCGTCTGACTCCATCAAGCGCGACGTTACGGCGAATACC
CCAGATGCTACTCGAGTGGCCTTCCGCGCTTCGGTATACGGGAAGGATCC
CCAGGCGGCGGTAGCGCTCTCGGAAGAGGAAGCGGCGGGAGTCGACGCCC
TCCTCGAAGCGGCGGCTGGTGTAAGTGGCGCCAGCGGCGCGGCCCCGGTC
CATCACGACCGTAGCATGTTTGATTCTGATCTTGTACACGGCGTAGGTGC
CGCGGATGCATACGACTCCATCAAACGCGACGTCTTCACTGATACGCCTG
AAGTCACACGGGTCGTTTTCGGGGGCTCCGACTACGGAAAAGACCCGCGC
TCGATGTGCCGAACGGCAGAGGAGCAAACCGCGGTGGATAGGCTCGCCGC
CAGGGCTAGGCGCGAGAGCGAGGCGGAGGCTCGACGCTCGAAGGCTCCGG
TTCATAACCACAGGTCGCTTTATGACTCGGATCTGGCCCAAGGGGCGGGC
GTCATGATGGAGTTCGAGGCGATCAAGCGTGAAGTCGAGCCCGACACCCC
GGCGTTGACCCGTCTCAGCTTCTTCGGGAGTACTTGTGAGTTCTACCCTT
CATGA
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Coding sequence (CDS) from alignment at H-elongata_contig69956:402..1856-

>mRNA_H-elongata_contig69956.14641.1 ID=mRNA_H-elongata_contig69956.14641.1|Name=mRNA_H-elongata_contig69956.14641.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2910bp|location=Sequence derived from alignment at H-elongata_contig69956:402..1856- (Himanthalia elongata Himel1 dioecious)
ATGCTGCGCAGCGGACTTTTGCGGTTGGCTACCCACGCCCATGTGCGAGA
AGCATGCGGTAGCATCATCAATATTAGAGGGTGCGGGAATCGTATGGGAT
CGAGGGCGTGGCTCTCTGCGATGATCGGTGGAGAGAGCAGCGGCGCGGAC
GACCCTACTCCTGCCGAAACGAAGCTGGCGTTCACGTCGACTGTTTATGG
CAAGGATCCCGCGGCGGGATCTGAGCTTACGGCATCTGAGGCAGCTGCCG
CAGAAAATCTTAAGAGGGCAGCGGTCAAACCAGGCGAAGCGCCCGCGTCG
AGAGGCTCTGATCCACGGGCGATGTTCGACTCAACTCTTTCACAGCAGAC
TGTAGATCGAAAGGCGTTCAGCGATATCAAGCGCGAAGTGGCGTCGGGAA
CACCCGACGCAACACGAGTAGCCTTTCGAGCCTCGGCTTATGGAAAAGAT
CCTGAGATGGCCGCGACGCTGTCGGAGAAGAATATCGTAGAGCTGGAGGA
GTTGCGGGTGAAGACAAATATTTGCGGCGCAGCGTCGTCTGGTGTGGCTC
CCATCCACGACAGCAGGAATATGTTCGACTCTGACCTCGCGCACGGCTCT
GGAACCACCGCGGCGTCCGTGGATGTCAACCGCGACGTGGTGGCAGACAC
ACCAGATGTCACGCGAATAGCTTTCCGCGCATCCGTCTACGGAAAGGATC
CTCAGGCGGCTGCCGAGCTCTCGGCGCAGGAGGCGGCCGAAGTCGAGGCT
CTAAGCAAAACGGCTGCACGACGCAGCGATGCTGCCGGGAACGTTGCCCC
TGTCCACGACGACCGTAGCATGTTCGATTCCGATTTGGAGCACAGCGTCG
GGATGGCGGCGGCGTCTGACTCCATCAAGCGCGACGTTACGGCGAATACC
CCAGATGCTACTCGAGTGGCCTTCCGCGCTTCGGTATACGGGAAGGATCC
CCAGGCGGCGGTAGCGCTCTCGGAAGAGGAAGCGGCGGGAGTCGACGCCC
TCCTCGAAGCGGCGGCTGGTGTAAGTGGCGCCAGCGGCGCGGCCCCGGTC
CATCACGACCGTAGCATGTTTGATTCTGATCTTGTACACGGCGTAGGTGC
CGCGGATGCATACGACTCCATCAAACGCGACGTCTTCACTGATACGCCTG
AAGTCACACGGGTCGTTTTCGGGGGCTCCGACTACGGAAAAGACCCGCGC
TCGATGTGCCGAACGGCAGAGGAGCAAACCGCGGTGGATAGGCTCGCCGC
CAGGGCTAGGCGCGAGAGCGAGGCGGAGGCTCGACGCTCGAAGGCTCCGG
TTCATAACCACAGGTCGCTTTATGACTCGGATCTGGCCCAAGGGGCGGGC
GTCATGATGGAGTTCGAGGCGATCAAGCGTGAAGTCGAGCCCGACACCCC
GGCGTTGACCCGTCTCAGCTTCTTCGGGAGTACTTGTGAGTTCTACCCTT
CATGAATGCTGCGCAGCGGACTTTTGCGGTTGGCTACCCACGCCCATGTG
CGAGAAGCATGCGGTAGCATCATCAATATTAGAGGGTGCGGGAATCGTAT
GGGATCGAGGGCGTGGCTCTCTGCGATGATCGGTGGAGAGAGCAGCGGCG
CGGACGACCCTACTCCTGCCGAAACGAAGCTGGCGTTCACGTCGACTGTT
TATGGCAAGGATCCCGCGGCGGGATCTGAGCTTACGGCATCTGAGGCAGC
TGCCGCAGAAAATCTTAAGAGGGCAGCGGTCAAACCAGGCGAAGCGCCCG
CGTCGAGAGGCTCTGATCCACGGGCGATGTTCGACTCAACTCTTTCACAG
CAGACTGTAGATCGAAAGGCGTTCAGCGATATCAAGCGCGAAGTGGCGTC
GGGAACACCCGACGCAACACGAGTAGCCTTTCGAGCCTCGGCTTATGGAA
AAGATCCTGAGATGGCCGCGACGCTGTCGGAGAAGAATATCGTAGAGCTG
GAGGAGTTGCGGGTGAAGACAAATATTTGCGGCGCAGCGTCGTCTGGTGT
GGCTCCCATCCACGACAGCAGGAATATGTTCGACTCTGACCTCGCGCACG
GCTCTGGAACCACCGCGGCGTCCGTGGATGTCAACCGCGACGTGGTGGCA
GACACACCAGATGTCACGCGAATAGCTTTCCGCGCATCCGTCTACGGAAA
GGATCCTCAGGCGGCTGCCGAGCTCTCGGCGCAGGAGGCGGCCGAAGTCG
AGGCTCTAAGCAAAACGGCTGCACGACGCAGCGATGCTGCCGGGAACGTT
GCCCCTGTCCACGACGACCGTAGCATGTTCGATTCCGATTTGGAGCACAG
CGTCGGGATGGCGGCGGCGTCTGACTCCATCAAGCGCGACGTTACGGCGA
ATACCCCAGATGCTACTCGAGTGGCCTTCCGCGCTTCGGTATACGGGAAG
GATCCCCAGGCGGCGGTAGCGCTCTCGGAAGAGGAAGCGGCGGGAGTCGA
CGCCCTCCTCGAAGCGGCGGCTGGTGTAAGTGGCGCCAGCGGCGCGGCCC
CGGTCCATCACGACCGTAGCATGTTTGATTCTGATCTTGTACACGGCGTA
GGTGCCGCGGATGCATACGACTCCATCAAACGCGACGTCTTCACTGATAC
GCCTGAAGTCACACGGGTCGTTTTCGGGGGCTCCGACTACGGAAAAGACC
CGCGCTCGATGTGCCGAACGGCAGAGGAGCAAACCGCGGTGGATAGGCTC
GCCGCCAGGGCTAGGCGCGAGAGCGAGGCGGAGGCTCGACGCTCGAAGGC
TCCGGTTCATAACCACAGGTCGCTTTATGACTCGGATCTGGCCCAAGGGG
CGGGCGTCATGATGGAGTTCGAGGCGATCAAGCGTGAAGTCGAGCCCGAC
ACCCCGGCGTTGACCCGTCTCAGCTTCTTCGGGAGTACTTGTGAGTTCTA
CCCTTCATGA
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