mRNA_H-elongata_contig69948.14640.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig69948.14640.1 vs. uniprot
Match: A0A6H5KP27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP27_9PHAE) HSP 1 Score: 212 bits (539), Expect = 2.250e-61 Identity = 91/116 (78.45%), Postives = 107/116 (92.24%), Query Frame = 1
Query: 1 LGVKGGMHAVGHALLSVVPLFLLCDPEDVDCEHVRPHNQRPQPRRILVYDKRPGGVGVADAMFGCHRAALTKALELVEGCPCPEGCVACIHDHGCTGYNSIIDKQAALIVLRRLIE 348
L ++GG+HAVGHALL+VVPLFLLCD DVDCEH RPH+ RPQP+RILV+DKRPGGVGV+DAMFGCHR L+KALELVEGCPCPEGC+ACIHDHGCTGYN+IIDK+AA+++L LI+
Sbjct: 1253 LDLEGGIHAVGHALLAVVPLFLLCDAADVDCEHARPHHSRPQPQRILVFDKRPGGVGVSDAMFGCHRGVLSKALELVEGCPCPEGCLACIHDHGCTGYNAIIDKRAAVVILESLIQ 1368
BLAST of mRNA_H-elongata_contig69948.14640.1 vs. uniprot
Match: D8LLG5_ECTSI (DEAD/DEAH box helicase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG5_ECTSI) HSP 1 Score: 190 bits (483), Expect = 6.220e-54 Identity = 80/100 (80.00%), Postives = 93/100 (93.00%), Query Frame = 1
Query: 1 LGVKGGMHAVGHALLSVVPLFLLCDPEDVDCEHVRPHNQRPQPRRILVYDKRPGGVGVADAMFGCHRAALTKALELVEGCPCPEGCVACIHDHGCTGYNS 300
L ++GG+HAVGHALL+VVPLFLLCD DVDCEH RPH+ RPQP+RILV+D+RPGGVGV+DAMFGCHR L+KALELVEGCPCP+GC+ACIHDHGCTGYN+
Sbjct: 811 LDLEGGIHAVGHALLAVVPLFLLCDAADVDCEHARPHHSRPQPQRILVFDRRPGGVGVSDAMFGCHRGVLSKALELVEGCPCPDGCLACIHDHGCTGYNA 910
BLAST of mRNA_H-elongata_contig69948.14640.1 vs. uniprot
Match: A0A7S2AHT8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AHT8_9STRA) HSP 1 Score: 130 bits (328), Expect = 6.980e-34 Identity = 54/110 (49.09%), Postives = 79/110 (71.82%), Query Frame = 1
Query: 7 VKGGMHAVGHALLSVVPLFLLCDPEDVDCEHVRPHNQRPQPRRILVYDKRPGGVGVADAMFGC-HRAALTKALELVEGCPCPEGCVACIHDHGCTGYNSIIDKQAALIVL 333
V+ +HA+ H L+++ PLF+LCD +D+D EHV + QRP+P R++VYDKRPGGVG+A+A++ C A L+KA +LV C C GC CIHD C+G N + K+ A+++L
Sbjct: 241 VRSAVHALNHVLVAIAPLFILCDKDDIDTEHVYVYQQRPRPARLIVYDKRPGGVGIAEALYCCGSHAVLSKAYDLVTSCSCAYGCPGCIHDPRCSGQNESLFKEGAILIL 350
BLAST of mRNA_H-elongata_contig69948.14640.1 vs. uniprot
Match: A0A4D9D1F7_9STRA (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1F7_9STRA) HSP 1 Score: 129 bits (325), Expect = 2.610e-33 Identity = 56/114 (49.12%), Postives = 79/114 (69.30%), Query Frame = 1
Query: 13 GGMHAVGHALLSVVPLFLLCDPEDVDCEHVRPHNQRPQPRRILVYDKRPGGVGVADAMFGCHRAALTKALELVEGCPCP--EGCVACIHDHGCTGYNSIIDKQAALIVLRRLIE 348
GG+HA+ HALL+V PLFL CDP D++ EH QRP+P R+ VYDKRPGG+G +D +F L++AL L+ CPC GC +C+ C+ YN+++ K AAL++LRRL++
Sbjct: 285 GGLHAINHALLAVTPLFLKCDPGDIEAEHAHVQYQRPRPPRVCVYDKRPGGIGASDGLFSALPHVLSQALALLASCPCDLLSGCPSCLVLPSCSSYNTVLHKPAALLLLRRLLD 398
BLAST of mRNA_H-elongata_contig69948.14640.1 vs. uniprot
Match: F0W7W2_9STRA (DEAD/DEAH box RNA helicase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W7W2_9STRA) HSP 1 Score: 120 bits (300), Expect = 3.580e-29 Identity = 50/113 (44.25%), Postives = 71/113 (62.83%), Query Frame = 1
Query: 10 KGGMHAVGHALLSVVPLFLLCDPEDVDCEHVRPHNQRPQPRRILVYDKRPGGVGVADAMFGCHRAALTKALELVEGCPCPEGCVACIHDHGCTGYNSIIDKQAALIVLRRLIE 348
G +H VGH L S+VPLF+ CDP D+D EH P QR +PRRI +Y+KR GG G+ + +TK+ L+ C C EGC +C+H CT +N ++DK+ A +L+ +IE
Sbjct: 934 NGSLHGVGHLLTSLVPLFIRCDPGDIDTEHYHPKEQRSRPRRITMYEKREGGTGIVSELQSVFAELVTKSFALLIECSCLEGCPSCVHSTRCTEHNEVLDKEGARCILKFIIE 1046
BLAST of mRNA_H-elongata_contig69948.14640.1 vs. uniprot
Match: A0A8K1CRR0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CRR0_PYTOL) HSP 1 Score: 119 bits (299), Expect = 4.860e-29 Identity = 52/113 (46.02%), Postives = 72/113 (63.72%), Query Frame = 1
Query: 10 KGGMHAVGHALLSVVPLFLLCDPEDVDCEHVRPHNQRPQPRRILVYDKRPGGVGVADAMFGCHRAALTKALELVEGCPCPEGCVACIHDHGCTGYNSIIDKQAALIVLRRLIE 348
G +H VGH LL+VVPLF+LCD D+D EH P +R +P RI +Y+ R GG G+ + + A L KA + + C C GC +CIH CT YN+++DK+ +LIVL L+E
Sbjct: 890 SGALHGVGHLLLAVVPLFVLCDAGDIDSEHYNPFERRSRPNRITIYEHREGGSGIVEEIVRSLPAILFKAWTIADECSCIVGCPSCIHSAQCTEYNNVLDKRGSLIVLEHLVE 1002
BLAST of mRNA_H-elongata_contig69948.14640.1 vs. uniprot
Match: A0A0G4EC89_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EC89_VITBC) HSP 1 Score: 119 bits (299), Expect = 4.970e-29 Identity = 53/115 (46.09%), Postives = 75/115 (65.22%), Query Frame = 1
Query: 1 LGVKGGMHAVGHALLSVVPLFLLCDPEDVDCEHVRPHNQRPQPRRILVYDKRPGGVGVADAMFGCHRAALTKALELVEGCPCPEGCVACIHDHGCTGYNSIIDKQAALIVLRRLI 345
L ++GG+H HALL+VVPLF+LCD D+ CE P ++R +P R++V+D PGGVG++ F R AL+LV C C +GC AC+ C YN++I K AAL+VLR ++
Sbjct: 1451 LDIRGGIHGAEHALLAVVPLFVLCDRTDISCECPNPWDERLRPLRLVVFDSTPGGVGISMRAFQQARGIARAALQLVNDCTCDQGCPACVCHPNCGEYNAVISKPAALVVLRAMV 1565
BLAST of mRNA_H-elongata_contig69948.14640.1 vs. uniprot
Match: A0A5A8EQ68_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EQ68_CAFRO) HSP 1 Score: 119 bits (297), Expect = 7.570e-29 Identity = 52/111 (46.85%), Postives = 72/111 (64.86%), Query Frame = 1
Query: 13 GGMHAVGHALLSVVPLFLLCDPEDVDCEHVRPHNQRPQPRRILVYDKRPGGVGVADAMFGCHRAALTKALELVEGCPCPEGCVACIHDHGCTGYNSIIDKQAALIVLRRLI 345
GG HA HAL++ +P F+LCD D+ + P +R +P R++VYD R GG+GVA A F R +AL ++E CPC GC +C HD C GYN +IDK AA+I+LR ++
Sbjct: 488 GGCHAASHALVAALPQFVLCDRSDLGMDCANPLAERARPLRVMVYDNRMGGIGVAAAAFQRARRMFRQALAILESCPCVPGCPSCCHDPACRGYNYVIDKPAAIIILRGVL 598
BLAST of mRNA_H-elongata_contig69948.14640.1 vs. uniprot
Match: A0A7S3NQ71_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NQ71_9STRA) HSP 1 Score: 117 bits (293), Expect = 3.130e-28 Identity = 51/118 (43.22%), Postives = 80/118 (67.80%), Query Frame = 1
Query: 1 LGVKGGMHAVGHALLSVVPLFLLCDPEDVDCEHVRPHNQRPQPRRILVYDKRPGGVGVADAMFGCHRAALTKALELVEGCPC--PEGCVACIHDHGCTGYNSIIDKQAALIVLRRLIE 348
L + G+HA HA+L++VPLF++CD DV+ EHV +RP+P RI+++D RPGG+GVA A+F A +++AL L+ CPC GC +C+ CT +N +D +AA+I+ R +++
Sbjct: 753 LDLHHGIHACTHAILNIVPLFVVCDNTDVNAEHVYISQKRPRPARIIIFDTRPGGIGVAHAIFRRIYAVISEALRLITECPCHAQSGCPSCLFSASCTAHNLALDSRAAIIIFRAILK 870
BLAST of mRNA_H-elongata_contig69948.14640.1 vs. uniprot
Match: A0A1Y1IHD6_KLENI (ATP-dependent helicase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IHD6_KLENI) HSP 1 Score: 115 bits (287), Expect = 2.080e-27 Identity = 50/116 (43.10%), Postives = 74/116 (63.79%), Query Frame = 1
Query: 4 GVKGGMHAVGHALLSVVPLFLLCDPEDVDCEHVRPHNQRPQPRRILVYDKRPGGVGVADAMFGCHRAALTKALELVEGCPCP--EGCVACIHDHGCTGYNSIIDKQAALIVLRRLI 345
G + G+HA GHA+L+V+PL+++C P D+ CE P + R +P R+LVYDK+P G+G+A L ALEL+E C C +GC C+H GC YN +DK+ A+ +L+ +I
Sbjct: 1843 GFREGLHAAGHAILNVLPLYVMCSPNDIGCECASPDDTRFRPERLLVYDKQPDGIGIAVQARPMFAELLQAALELLEACECTLSDGCPGCVHHTGCGEYNRCLDKRYAIAILKSVI 1958 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69948.14640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig69948.14640.1 >prot_H-elongata_contig69948.14640.1 ID=prot_H-elongata_contig69948.14640.1|Name=mRNA_H-elongata_contig69948.14640.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp MHAVGHALLSVVPLFLLCDPEDVDCEHVRPHNQRPQPRRILVYDKRPGGVback to top mRNA from alignment at H-elongata_contig69948:447..1518+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig69948.14640.1 ID=mRNA_H-elongata_contig69948.14640.1|Name=mRNA_H-elongata_contig69948.14640.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1072bp|location=Sequence derived from alignment at H-elongata_contig69948:447..1518+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig69948:447..1518+ >mRNA_H-elongata_contig69948.14640.1 ID=mRNA_H-elongata_contig69948.14640.1|Name=mRNA_H-elongata_contig69948.14640.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig69948:447..1518+ (Himanthalia elongata Himel1 dioecious)back to top |