mRNA_H-elongata_contig69842.14633.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig69842.14633.1 vs. uniprot
Match: A0A6H5LPB6_9PHAE (Na_H_Exchanger domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LPB6_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 9.740e-20 Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 1
Query: 1 IIFLALPGVLLGATLTAVFIKMVLPYDWDWELCFVFGSMVAATDPVAVVALLEEL 165
IIFLA PGV+LGA LTAVF+K VLPYDWDW L VFGSMVAATDPVAVVALLEEL
Sbjct: 129 IIFLAGPGVILGAGLTAVFMKFVLPYDWDWNLSMVFGSMVAATDPVAVVALLEEL 183
BLAST of mRNA_H-elongata_contig69842.14633.1 vs. uniprot
Match: UPI00117DD010 (sodium:proton antiporter n=1 Tax=Catenovulum sediminis TaxID=1740262 RepID=UPI00117DD010) HSP 1 Score: 75.5 bits (184), Expect = 1.390e-14 Identity = 32/52 (61.54%), Postives = 45/52 (86.54%), Query Frame = 1
Query: 10 LALPGVLLGATLTAVFIKMVLPYDWDWELCFVFGSMVAATDPVAVVALLEEL 165
LA+PG+++ TLTA F+K V P+DW W +CF+FG++++ATDPVAVVALL+EL
Sbjct: 106 LAVPGLIISTTLTAAFVKYVFPWDWSWTVCFMFGALISATDPVAVVALLKEL 157
BLAST of mRNA_H-elongata_contig69842.14633.1 vs. uniprot
Match: W7QFK9_9ALTE (NhaP-type Na+/H+ and K+/H+ antiporter n=2 Tax=Catenovulum agarivorans TaxID=1172192 RepID=W7QFK9_9ALTE) HSP 1 Score: 73.9 bits (180), Expect = 4.840e-14 Identity = 32/55 (58.18%), Postives = 47/55 (85.45%), Query Frame = 1
Query: 1 IIFLALPGVLLGATLTAVFIKMVLPYDWDWELCFVFGSMVAATDPVAVVALLEEL 165
I LA+PG+++ ++TAVF+K V P+DW W +CF+FG++++ATDPVAVVALL+EL
Sbjct: 103 IALLAVPGLIVCTSITAVFVKYVFPWDWSWPICFMFGALISATDPVAVVALLKEL 157
BLAST of mRNA_H-elongata_contig69842.14633.1 vs. uniprot
Match: UPI001EF3AC7F (cation:proton antiporter n=1 Tax=Vibrio sp. Of7-15 TaxID=2724879 RepID=UPI001EF3AC7F) HSP 1 Score: 73.2 bits (178), Expect = 9.050e-14 Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 1
Query: 1 IIFLALPGVLLGATLTAVFIKMVLPYDWDWELCFVFGSMVAATDPVAVVALLEE 162
I LA+PG+LL TLTA K V P+DW W LCF+FG++++ATDPVAVVALL+E
Sbjct: 104 IALLAIPGLLLATTLTASLAKWVFPWDWSWALCFLFGALISATDPVAVVALLKE 157
BLAST of mRNA_H-elongata_contig69842.14633.1 vs. uniprot
Match: A0A7S0WNU0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WNU0_9CHLO) HSP 1 Score: 72.4 bits (176), Expect = 1.190e-13 Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = 1
Query: 4 IFLALPGVLLGATLTAVFIKMVLPYDWDWELCFVFGSMVAATDPVAVVALLEEL 165
+ LA PGVLL LTA F K+ PYDW W +CF+FGS++AATDPVAV++LL++L
Sbjct: 239 LLLACPGVLLSTVLTAAFAKIFFPYDWSWIMCFMFGSILAATDPVAVLSLLKDL 292
BLAST of mRNA_H-elongata_contig69842.14633.1 vs. uniprot
Match: A0A1Y5DAQ5_9GAMM (Peptidase (Fragment) n=1 Tax=Bermanella sp. 47_1433_sub80_T6 TaxID=1856278 RepID=A0A1Y5DAQ5_9GAMM) HSP 1 Score: 71.6 bits (174), Expect = 2.060e-13 Identity = 30/55 (54.55%), Postives = 45/55 (81.82%), Query Frame = 1
Query: 1 IIFLALPGVLLGATLTAVFIKMVLPYDWDWELCFVFGSMVAATDPVAVVALLEEL 165
I LA+PG+++ +TAV +K + P+DW W +CF+FG++++ATDPVAVVALL+EL
Sbjct: 104 IALLAVPGLMVATAITAVLVKYIFPWDWSWPVCFMFGALISATDPVAVVALLKEL 158
BLAST of mRNA_H-elongata_contig69842.14633.1 vs. uniprot
Match: A0A7S0B3H8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0B3H8_9DINO) HSP 1 Score: 68.6 bits (166), Expect = 2.240e-13 Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1
Query: 1 IIFLALPGVLLGATLTAVFIKMVLPYDWDWELCFVFGSMVAATDPVAVVALLEEL 165
++ LA+PGV+LG TA F+ VLPY W W C VFGS++AATDPVAVVAL L
Sbjct: 47 VLLLAVPGVVLGTLGTAAFVHEVLPYGWSWSTCLVFGSILAATDPVAVVALFNTL 101
BLAST of mRNA_H-elongata_contig69842.14633.1 vs. uniprot
Match: A0A1Y1HNL5_KLENI (Na+/H+ antiporter n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HNL5_KLENI) HSP 1 Score: 70.9 bits (172), Expect = 5.800e-13 Identity = 34/55 (61.82%), Postives = 44/55 (80.00%), Query Frame = 1
Query: 1 IIFLALPGVLLGATLTAVFIKMVLPYDWDWELCFVFGSMVAATDPVAVVALLEEL 165
I+ L + GVL+G LTAVF + VLPYDW W C +FGS+++ATDPVAVVA+L+EL
Sbjct: 107 ILLLGVLGVLMGIVLTAVFARYVLPYDWTWHECLLFGSVLSATDPVAVVAVLKEL 161
BLAST of mRNA_H-elongata_contig69842.14633.1 vs. uniprot
Match: UPI0013D71F92 (cation:proton antiporter n=1 Tax=Desulfopila sp. IMCC35008 TaxID=2653858 RepID=UPI0013D71F92) HSP 1 Score: 70.9 bits (172), Expect = 5.890e-13 Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 1
Query: 1 IIFLALPGVLLGATLTAVFIKMVLPYDWDWELCFVFGSMVAATDPVAVVALLEE 162
I+ LA+PG+LL TAV K + P++W W LCF+FG++V+ATDPVAVVALL+E
Sbjct: 104 IVILAIPGLLLATMATAVLAKFLFPWEWSWALCFLFGALVSATDPVAVVALLKE 157
BLAST of mRNA_H-elongata_contig69842.14633.1 vs. uniprot
Match: A0A7S3WFA9_EMIHU (Hypothetical protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WFA9_EMIHU) HSP 1 Score: 70.5 bits (171), Expect = 8.060e-13 Identity = 32/52 (61.54%), Postives = 43/52 (82.69%), Query Frame = 1
Query: 10 LALPGVLLGATLTAVFIKMVLPYDWDWELCFVFGSMVAATDPVAVVALLEEL 165
LA+PGVL+ A LTA +++ +LPY+W W+L FGS++AATDPVAVVALL +L
Sbjct: 79 LAVPGVLISAALTACYVRWLLPYEWPWDLALAFGSVLAATDPVAVVALLNDL 130 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69842.14633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig69842.14633.1 >prot_H-elongata_contig69842.14633.1 ID=prot_H-elongata_contig69842.14633.1|Name=mRNA_H-elongata_contig69842.14633.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp IIFLALPGVLLGATLTAVFIKMVLPYDWDWELCFVFGSMVAATDPVAVVAback to top mRNA from alignment at H-elongata_contig69842:182..346- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig69842.14633.1 ID=mRNA_H-elongata_contig69842.14633.1|Name=mRNA_H-elongata_contig69842.14633.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig69842:182..346- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig69842:182..346- >mRNA_H-elongata_contig69842.14633.1 ID=mRNA_H-elongata_contig69842.14633.1|Name=mRNA_H-elongata_contig69842.14633.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig69842:182..346- (Himanthalia elongata Himel1 dioecious)back to top |