mRNA_H-elongata_contig6982.14628.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6982.14628.1
Unique NamemRNA_H-elongata_contig6982.14628.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig6982.14628.1 vs. uniprot
Match: D8LH57_ECTSI (Putative, Dynein intermediate chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH57_ECTSI)

HSP 1 Score: 921 bits (2380), Expect = 0.000e+0
Identity = 465/520 (89.42%), Postives = 483/520 (92.88%), Query Frame = 1
Query:   25 QSDVNRFRKKAEKDEDYKIAVKSLGPIIGRCMKQNNTIDIYEEYFDGDEMDHSSEPPSAKGLAVFRDPN---GIKRTATSINWHPDGPTKIAVSYSILNFQDPRFMNTRMPGESYVWDTMNPNTPDVALMPPSPLCCLRFNPKSTDNLVGGSYNGLVNFFDLRKPGGTIGQAVPLETSVIEKSHHDPVYDVFWISSKTGNQCASVSTDGQMMWWDTRRLGEPTDTLQLATDSKGGGMVLGGSSMEYNQEAGPTKYLVGTEQGVVLQVNLRNRKQNNGISVFDTGPGKHHGPIYSIQRNPTHNKYFLTVGDWTARIWAEDLKTPIMTTKATKLHDFIFPSRGKSTYLTSGCFSPTRAGVFFVTRMDGVMDIWDYFYRQNEVAYSHKARKASGPMEVGDASLSSIAVQGNVQVGGKLVAVGDVNGTVSLLEVCESLALSAGSQEKGAIGAMFEREMKQEKNLELRERDLRRAKAVEQEAKSRAEAEQKDGKDQRMEELLRKVDADFLSMIKEAEDDDTKVAE 1575
            QSDVNRFRKKAEKDEDYKIA+KSLGPIIGRCMKQNNTIDIYEEYFDGDE+DHSSEPPSAKGLAVFRDPN   GIKRTATSINWHPDGPTKIAVSYSILNFQDPRFMN RMP +SYVWDTMNPNTPDVAL PPSPLCCLRFNPKSTDNLVGGSYNGL+NFFDLRKPG TIGQAVPLETSVIEKSHHDPVYDVFWISSKTGNQCASVSTDGQMMWWDTRRLGEPTDTLQLATDSKGGGMVLGGSSMEYNQEAGPTKYLVGTEQG+VLQVNLRNRKQNNGISVFD G GKHHGPIYSIQRNPT NKYF+TVGDWTARIWAEDLKTPIMTTK              S YLTSGCFSPTRAGVFFVTRMDGV+DIWDYFYRQNEVAYSHK         VGDA LSSI+VQGNVQVGGKLVAVGDVNGTVSLLEVCESLA+SAGSQEKGAIGAMFEREMKQEKNLELRERDLRRAKA EQ+AK++A+AE+KDGKD+RMEELLRKVDADFL+MIKEAEDD++K AE
Sbjct:   90 QSDVNRFRKKAEKDEDYKIAIKSLGPIIGRCMKQNNTIDIYEEYFDGDEVDHSSEPPSAKGLAVFRDPNAVNGIKRTATSINWHPDGPTKIAVSYSILNFQDPRFMNARMPVQSYVWDTMNPNTPDVALTPPSPLCCLRFNPKSTDNLVGGSYNGLINFFDLRKPGATIGQAVPLETSVIEKSHHDPVYDVFWISSKTGNQCASVSTDGQMMWWDTRRLGEPTDTLQLATDSKGGGMVLGGSSMEYNQEAGPTKYLVGTEQGIVLQVNLRNRKQNNGISVFDMGAGKHHGPIYSIQRNPTQNKYFMTVGDWTARIWAEDLKTPIMTTKY------------HSAYLTSGCFSPTRAGVFFVTRMDGVVDIWDYFYRQNEVAYSHK---------VGDAPLSSISVQGNVQVGGKLVAVGDVNGTVSLLEVCESLAVSAGSQEKGAIGAMFEREMKQEKNLELRERDLRRAKAAEQDAKNKADAEKKDGKDERMEELLRKVDADFLAMIKEAEDDESKGAE 588          
BLAST of mRNA_H-elongata_contig6982.14628.1 vs. uniprot
Match: A0A835ZH32_9STRA (Putative dynein intermediate chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH32_9STRA)

HSP 1 Score: 826 bits (2134), Expect = 7.810e-297
Identity = 411/519 (79.19%), Postives = 449/519 (86.51%), Query Frame = 1
Query:   25 QSDVNRFRKKAEKDEDYKIAVKSLGPIIGRCMKQNNTIDIYEEYFDGDEMDHSSEPPSAKGLAVFRDPNGIKRTATSINWHPDGPTKIAVSYSILNFQDPRFMNT--RMPGESYVWDTMNPNTPDVALMPPSPLCCLRFNPKSTDNLVGGSYNGLVNFFDLRKPGGTIGQAVPLETSVIEKSHHDPVYDVFWISSKTGNQCASVSTDGQMMWWDTRRLGEPTDTLQLATDSKGGGMVLGGSSMEYNQEAGPTKYLVGTEQGVVLQVNLRNRKQNNGISVFDTGPGKHHGPIYSIQRNPTHNKYFLTVGDWTARIWAEDLKTPIMTTKATKLHDFIFPSRGKSTYLTSGCFSPTRAGVFFVTRMDGVMDIWDYFYRQNEVAYSHKARKASGPMEVGDASLSSIAVQGNVQVGGKLVAVGDVNGTVSLLEVCESLALSAGSQEKGAIGAMFEREMKQEKNLELRERDLRRAKAVEQEAKSRAEAEQKDGKDQRMEELLRKVDADFLSMIKEAEDDDTKVAE 1575
            QSDVNRFRKKAEKDEDYK AVK+LGP+IG CM+QNNT+DIYEEYF+  ++DHSSEPPSAKGLAVFRDP+ IKRTATSINWHPDGPTKIAVSYSIL+FQDPRFM    RMP  SYVWD +NPN PDV L+PPSPLCCLRFNPKSTD LVGGSYNGL+NFFDLRKPGG  G  +PLE+SVIEKSHHDPVYDVFW+SSKTGNQC SVSTDGQMMWWDTRRL EPTD LQLATDSKGGGMVLGGSSMEYNQEAGPTKYLVGTEQG+VLQ+NLRNRKQNNGISVFD   GKHHGPIYS+QRNP  NK+F+TVGDWTARIWAED+KTPIMTTK                YLT GCFSPTRAGVF+VTRMDGV+D+WDY+YRQNEVAYSHK         VGDA+LSSIAVQG+ Q GG+LVAVGDVNGTVSLLEVCESLA+  G+QEK AIGAMFEREMKQEKNLELRERDLRRA+A          +E+KDGKD+RMEELLR+VDA FL+MIKEAEDD+TK A+
Sbjct:  137 QSDVNRFRKKAEKDEDYKGAVKALGPVIGGCMRQNNTVDIYEEYFEDTQVDHSSEPPSAKGLAVFRDPHSIKRTATSINWHPDGPTKIAVSYSILSFQDPRFMGAANRMPVSSYVWDVLNPNAPDVELIPPSPLCCLRFNPKSTDTLVGGSYNGLINFFDLRKPGGLTGTCLPLESSVIEKSHHDPVYDVFWVSSKTGNQCCSVSTDGQMMWWDTRRLAEPTDVLQLATDSKGGGMVLGGSSMEYNQEAGPTKYLVGTEQGIVLQINLRNRKQNNGISVFDMQAGKHHGPIYSVQRNPAQNKFFMTVGDWTARIWAEDIKTPIMTTKY------------HGAYLTGGCFSPTRAGVFYVTRMDGVVDVWDYYYRQNEVAYSHK---------VGDAALSSIAVQGSAQAGGRLVAVGDVNGTVSLLEVCESLAVGQGAQEKAAIGAMFEREMKQEKNLELRERDLRRARAXXXXXXXXXXSEKKDGKDERMEELLRRVDAGFLAMIKEAEDDETKGAD 634          
BLAST of mRNA_H-elongata_contig6982.14628.1 vs. uniprot
Match: A0A7S2QVY7_9STRA (Hypothetical protein n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVY7_9STRA)

HSP 1 Score: 784 bits (2024), Expect = 1.010e-280
Identity = 395/520 (75.96%), Postives = 440/520 (84.62%), Query Frame = 1
Query:   28 SDVNRFRKKAEKDEDYKIAVKSLGPIIGRCMKQNNTIDIYEEYFDGDEMDHSSEPPSAKGLAVFRDPNGIKRTATSINWHPDGPT---KIAVSYSILNFQDPRFMN-TRMPGESYVWDTMNPNTPDVALMPPSPLCCLRFNPKSTDNLVGGSYNGLVNFFDLRKPGGTIGQAVPLETSVIEKSHHDPVYDVFWISSKTGNQCASVSTDGQMMWWDTRRLGEPTDTLQLATDSKGGGMVLGGSSMEYNQEAGPTKYLVGTEQGVVLQVNLRNRKQNNGISVFDTGPGKHHGPIYSIQRNPTHNKYFLTVGDWTARIWAEDLKTPIMTTKATKLHDFIFPSRGKSTYLTSGCFSPTRAGVFFVTRMDGVMDIWDYFYRQNEVAYSHKARKASGPMEVGDASLSSIAVQGNVQVGGKLVAVGDVNGTVSLLEVCESLALSAGSQEKGAIGAMFEREMKQEKNLELRERDLRRAKAVEQEAKSRAEAEQKDGKDQRMEELLRKVDADFLSMIKEAEDDDTKVAE 1575
            SD+ R+RKKAEKDE+YK A+K LGP+IGRCMKQNNTI+IYEEYFDG + DHSSEPPSAKGLAVFRDPN +KRTATSINWHP+GP    KIAV+YSILNFQD RFMN  +MP  SY+WD MNPNTPD+ L+PPSPLCCLRFN KSTD LVGGSYNGLV+F+DLRKP     Q +P ETSVIEKSHHDPVYDVFWISSKTGNQCASVSTDGQMMWWDTRRLGEPTD L LATDSKGGGM LGGSSMEYNQEAGPTKYLVGTEQG+VL +NLRN+K NNGI+V+D+GPGKHHGPIYSIQRNPTHNK+F+TVGDWTARIW EDLKTPIMTTK              S+YLTSGC+SPTRAGVF+VTRMDGV+DIWDYFYRQNEVAYSHK         VG+ +LS+I+VQGN+Q GG+LVAVGDVNGTVSLLEVC+SLA S    EK AI  MFERE KQEKNLELRERDL+R +A E+           DGKD++MEELLRKVDADFL+MIKEAEDD++K +E
Sbjct:  100 SDMQRYRKKAEKDEEYKTAMKLLGPMIGRCMKQNNTINIYEEYFDGVQADHSSEPPSAKGLAVFRDPNDVKRTATSINWHPEGPATNGKIAVAYSILNFQDQRFMNDAQMPVSSYIWDIMNPNTPDIELLPPSPLCCLRFNAKSTDTLVGGSYNGLVSFYDLRKPNAPEKQCMPHETSVIEKSHHDPVYDVFWISSKTGNQCASVSTDGQMMWWDTRRLGEPTDVLNLATDSKGGGMTLGGSSMEYNQEAGPTKYLVGTEQGIVLAINLRNKKSNNGITVYDSGPGKHHGPIYSIQRNPTHNKFFMTVGDWTARIWVEDLKTPIMTTKY------------HSSYLTSGCWSPTRAGVFYVTRMDGVVDIWDYFYRQNEVAYSHK---------VGEDALSTISVQGNMQSGGRLVAVGDVNGTVSLLEVCDSLA-SQQPNEKMAINGMFERETKQEKNLELRERDLKRQRAAEEXXXXXXXXXXXDGKDEKMEELLRKVDADFLAMIKEAEDDESKASE 597          
BLAST of mRNA_H-elongata_contig6982.14628.1 vs. uniprot
Match: A0A7S2FI35_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FI35_9STRA)

HSP 1 Score: 753 bits (1945), Expect = 5.010e-269
Identity = 376/516 (72.87%), Postives = 431/516 (83.53%), Query Frame = 1
Query:   28 SDVNRFRKKAEKDEDYKIAVKSLGPIIGRCMKQNNTIDIYEEYFDGDEMDHSSEPPSAKGLAVFRDPNGIKRTATSINWHPDGPTKIAVSYSILNFQDPRFMNTRMPGESYVWDTMNPNTPDVALMPPSPLCCLRFNPKSTDNLVGGSYNGLVNFFDLRKPGGTIGQAVPLETSVIEKSHHDPVYDVFWISSKTGNQCASVSTDGQMMWWDTRRLGEPTDTLQLATDSKGGGMVLGGSSMEYNQEAGPTKYLVGTEQGVVLQVNLRNRKQNNGISVFDTGPGKHHGPIYSIQRNPTHNKYFLTVGDWTARIWAEDLKTPIMTTKATKLHDFIFPSRGKSTYLTSGCFSPTRAGVFFVTRMDGVMDIWDYFYRQNEVAYSHKARKASGPMEVGDASLSSIAVQGNVQVGGKLVAVGDVNGTVSLLEVCESLALSAGSQEKGAIGAMFEREMKQEKNLELRERDLRRAKAVEQEAKSRAEAEQKDGKDQRMEELLRKVDADFLSMIKEAEDDDTKVAE 1575
            +D NRFRKKAEKDEDYK AVK+LGP+I RCMKQNNTIDIYEEYF+GD+ DHS EPP+AKGLAVFRDPN +KRTATSINWHP+GP KIAVSYSIL+FQDPR  N  MP +SY+WD +NPNTP+  L+P SPLCCLRFNPKST+ LVGGSYNGLV F+DLR+      Q+ P ++S+IEKSHHDPVYDVFWISSKTGN CASVSTDGQM+WWD R+L +PTD L L TDSKGGGMVLGGSSM YN EAGPTKYL+GTEQG+VL VNL+++KQNNGI+V+D+GPGKHHGPIY+I+RNPTHNK+F+TVGDWTARIW ED KTPIMTTK              S YLTSGC+SPTRAGVFFVTRMDGV+DIWDYFYRQNEVAYSHK         VGD  LS IAV       G+LV+VGDV GTVSLLEVCESLA +  + EK AI  MF+RE KQEKNLE+RERDL+RAKA E EA++R  A++KDGKD++MEELLRKVDADFL+MIKEAEDD++K +E
Sbjct:   92 ADTNRFRKKAEKDEDYKSAVKALGPVISRCMKQNNTIDIYEEYFEGDQSDHSGEPPTAKGLAVFRDPNHVKRTATSINWHPEGPAKIAVSYSILSFQDPRAANAHMPKKSYIWDILNPNTPEQELLPQSPLCCLRFNPKSTETLVGGSYNGLVTFYDLRRQ-----QSTPFDSSLIEKSHHDPVYDVFWISSKTGNHCASVSTDGQMLWWDIRKLSQPTDQLLLNTDSKGGGMVLGGSSMTYNTEAGPTKYLIGTEQGIVLGVNLKSKKQNNGITVYDSGPGKHHGPIYAIERNPTHNKFFMTVGDWTARIWFEDTKTPIMTTKY------------HSAYLTSGCWSPTRAGVFFVTRMDGVVDIWDYFYRQNEVAYSHK---------VGDQELSCIAVSNQA---GRLVSVGDVKGTVSLLEVCESLA-APQANEKTAISNMFDRETKQEKNLEVRERDLKRAKAAEAEARNRESADKKDGKDEKMEELLRKVDADFLAMIKEAEDDESKQSE 577          
BLAST of mRNA_H-elongata_contig6982.14628.1 vs. uniprot
Match: A0A6V1SU02_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SU02_HETAK)

HSP 1 Score: 749 bits (1933), Expect = 8.100e-268
Identity = 379/523 (72.47%), Postives = 429/523 (82.03%), Query Frame = 1
Query:   25 QSDVNRFRKKAEKDEDYKIAVKSLGPIIGRCMKQNNTIDIYEEYFDGDEMDHSSEPPSAKGLAVFRDPN-----GIKRTATSINWHPDGPTKIAVSYSILNFQDPRFM-NTRMPGESYVWDTMNPNTPDVALMPPSPLCCLRFNPKSTDNLVGGSYNGLVNFFDLRKPGGTIGQAVPLETSVIEKSHHDPVYDVFWISSKTGNQCASVSTDGQMMWWDTRRLGEPTDTLQLATDSKGGGMVLGGSSMEYNQEAGPTKYLVGTEQGVVLQVNLRNRKQNNGISVFDTGPGKHHGPIYSIQRNPTHNKYFLTVGDWTARIWAEDLKTPIMTTKATKLHDFIFPSRGKSTYLTSGCFSPTRAGVFFVTRMDGVMDIWDYFYRQNEVAYSHKARKASGPMEVGDASLSSIAVQGNVQVGGKLVAVGDVNGTVSLLEVCESLALSAGSQEKGAIGAMFEREMKQEKNLELRERDLRRAKAVEQEAKSRAEAEQKDGKDQRMEELLRKVDADFLSMIKEAEDDDTKVAE 1575
            QSDV+RFRKKAEKDE+YK A+K LGP+IG+C++QNNTIDIYEEYF+GD  DHSSEPPSAKGLAVFRDPN     G +RTATSINWHP+GPTKIAVSYS+LNFQDPRF+ ++RMP  SYVWD +NPNTPDV L+PP+PL CLR+NPKST+ LVGGSYNGL+ F+DLRKPG   G+A P + SVIEKSHHDPVYDVFW+SSKTGNQC SVSTDGQM+WWDTRRL +P+D L LATD+KGGGMVLGGS++EYN EAGPTK+LVGTEQGVVL VN RN KQNNGI+VFD GPGKHHGPIYSIQRNPT+ K+FLTVGDWTARIW EDLKTPIMTTK         P+     YLT+GC+SP RAGVFFVTRMDGV+DIWDYFYRQNEVAYSHK         VGD+ LSSI+VQG+VQ GG+LVAVGD NGTVSLLEVC+SL  S    EK AI AM ERE KQEKNL+LRE               R  AE+KDGKD++MEELLR VDA FL+MIK AEDD++K  E
Sbjct:   34 QSDVSRFRKKAEKDEEYKNAIKDLGPVIGQCLRQNNTIDIYEEYFEGDAADHSSEPPSAKGLAVFRDPNALGAQGAQRTATSINWHPEGPTKIAVSYSVLNFQDPRFLGSSRMPLPSYVWDIVNPNTPDVELLPPNPLVCLRYNPKSTETLVGGSYNGLITFYDLRKPGAPTGRAAPHDASVIEKSHHDPVYDVFWVSSKTGNQCVSVSTDGQMLWWDTRRLADPSDRLLLATDAKGGGMVLGGSALEYNTEAGPTKFLVGTEQGVVLSVNTRNAKQNNGIAVFDMGPGKHHGPIYSIQRNPTNTKFFLTVGDWTARIWTEDLKTPIMTTK-------YHPA-----YLTAGCWSPARAGVFFVTRMDGVVDIWDYFYRQNEVAYSHK---------VGDSPLSSISVQGHVQGGGRLVAVGDTNGTVSLLEVCDSLG-SPQPNEKAAINAMLERETKQEKNLDLREXXXXXXXXXXXXXXQREAAEKKDGKDEKMEELLRMVDASFLAMIKSAEDDESKATE 534          
BLAST of mRNA_H-elongata_contig6982.14628.1 vs. uniprot
Match: A0A7S3HCJ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HCJ1_9STRA)

HSP 1 Score: 745 bits (1923), Expect = 2.120e-265
Identity = 378/520 (72.69%), Postives = 430/520 (82.69%), Query Frame = 1
Query:   25 QSDVNRFRKKAEKDEDYKIAVKSLGPIIGRCMKQNNTIDIYEEYFDGDEMDHSSEPPSAKGLAVFRDPNGIKRTATSINWHPD--GPTKIAVSYSILNFQDPRFMNTRMPGESYVWDTMNPNTPDVALMPPSPLCCLRFNPKSTDNLVGGSYNGLVNFFDLRKPGG-TIGQAVPLETSVIEKSHHDPVYDVFWISSKTGNQCASVSTDGQMMWWDTRRLGEPTDTLQLATDSKGGGMVLGGSSMEYNQEAGPTKYLVGTEQGVVLQVNLRNRKQNNGISVFDTGPGKHHGPIYSIQRNPTHNKYFLTVGDWTARIWAEDLKTPIMTTKATKLHDFIFPSRGKSTYLTSGCFSPTRAGVFFVTRMDGVMDIWDYFYRQNEVAYSHKARKASGPMEVGDASLSSIAVQGNVQVGGKLVAVGDVNGTVSLLEVCESLALSAGSQEKGAIGAMFEREMKQEKNLELRERDLRRAKAVEQEAKSRAEAEQKDGKDQRMEELLRKVDADFLSMIKEAEDDDTKVAE 1575
            QSDV+RFRKKAEKDEDYK AVK+LGPI+ RCMKQ NTIDIYEEYF+GD +DHSSEPPSAKGLAVFRDP   KRTATSINWHPD   P KIAVSYS L FQ+ +F  +RMP +S++WD +NPNTPD  L+PPSPLCCLRFNPK+TD+LVGGSYNGL+ F+DLR+ GG T  + +P  TSVIEKSHHDPVY+VFWI+SKTGNQC SVSTDGQM+WWDTRRL EPTD+LQL TD K  G +LGGSS+EYN EAGP+KYLVGTEQGVVL VNL+NRKQNNGI+VFD G GKHHGPIYSIQRNP + K FLT+GDWTARIW EDL+TPIMTTK              S+YLTSGC+SPTRAGVFFVTRMDGV+DIWDYFYRQNEVAYSHK         V D +LSSIAVQG  Q GGKLVA+GDV GTVSLLE+CESLA+   ++ K AI  MFEREMKQEKNLE RER+LRR KA+E +  +R   ++KD KD++ME LLRKVDADFL+MIKEAEDD++K AE
Sbjct:  100 QSDVSRFRKKAEKDEDYKGAVKALGPIVSRCMKQVNTIDIYEEYFEGDNVDHSSEPPSAKGLAVFRDPLDEKRTATSINWHPDPSAPAKIAVSYSDLTFQNAKFATSRMPQQSFIWDILNPNTPDSELLPPSPLCCLRFNPKNTDSLVGGSYNGLITFYDLRRSGGGTSKETLPFSTSVIEKSHHDPVYEVFWINSKTGNQCVSVSTDGQMLWWDTRRLSEPTDSLQLCTDVKAQGQILGGSSLEYNSEAGPSKYLVGTEQGVVLMVNLKNRKQNNGITVFDQGAGKHHGPIYSIQRNPANTKCFLTIGDWTARIWMEDLRTPIMTTKY------------HSSYLTSGCWSPTRAGVFFVTRMDGVVDIWDYFYRQNEVAYSHK---------VCDPTLSSIAVQGTAQSGGKLVAMGDVTGTVSLLELCESLAVPQTNERK-AIDLMFEREMKQEKNLEARERELRRQKALETDKSTREAQDKKDAKDEKMEALLRKVDADFLAMIKEAEDDESKAAE 597          
BLAST of mRNA_H-elongata_contig6982.14628.1 vs. uniprot
Match: F0YQ52_AURAN (Uncharacterized protein n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQ52_AURAN)

HSP 1 Score: 726 bits (1875), Expect = 2.030e-258
Identity = 371/514 (72.18%), Postives = 417/514 (81.13%), Query Frame = 1
Query:   28 SDVNRFRKKAEKDEDYKIAVKSLGPIIGRCMKQNNTIDIYEEYFDGDEMDHSSEPPSAKGLAVFRDPNGIKRTATSINWHPDGPTKIAVSYSILNFQDPRFMNTRMPGESYVWDTMNPNTPDVALMPPSPLCCLRFNPKSTDNLVGGSYNGLVNFFDLRKPGGTIGQAVPLETSVIEKSHHDPVYDVFWISSKTGNQCASVSTDGQMMWWDTRRLGEPTDTLQLATDSKGGGMVLGGSSMEYNQEAGPTKYLVGTEQGVVLQVNLRNRKQNNGISVFDTGPGKHHGPIYSIQRNPTHNKYFLTVGDWTARIWAEDLKTPIMTTKATKLHDFIFPSRGKSTYLTSGCFSPTRAGVFFVTRMDGVMDIWDYFYRQNEVAYSHKARKASGPMEVGDASLSSIAVQGNVQVGGKLVAVGDVNGTVSLLEVCESLALSAGSQEKGAIGAMFEREMKQEKNLELRERDLRRAKAVEQEAKSRAEAEQKDGKDQRMEELLRKVDADFLSMIKEAEDDDTKV 1569
            +DVNR+RKKAEKDEDYK  +K+LGPII RCM+QNNTIDIYEEYF  D+ D S EPPSAKGLAVFRDPN +KRTATSI+WHP+GPTKIAVSYSILNFQD RF + R+P +SY+WD +NPNTPD  L PPSPLCCLRFNPKSTD LVGGSYNGLV F+DLR+ GG      PLE+SVIEKSHHDP+YDVFWISSKTGNQCASVSTDGQM+WWDTRRLGEP D L L +D+KG GMVLGGSSMEYN+E  PTKYLVGTEQG+VL +NLRNRKQNNGI+V+D G GKHHGPIYSIQRNPTHNK+F+TVGDWTARIW EDLKTPIMTTK              S YLTSGC+SPTRAGVF+VTRMDGV+DIWDYFYRQNEVAYSHK         VGDA+LS+I+V       G+LVAVGD NGTVSLLEVCESLA +  + EK AI +M ERE KQEKNLELR+RDLRRA+  + E               +MEE LR VDA+FL+MIKEAEDD++KV
Sbjct:   91 TDVNRYRKKAEKDEDYKTTMKNLGPIISRCMRQNNTIDIYEEYFSHDDRDWSGEPPSAKGLAVFRDPNAMKRTATSIHWHPEGPTKIAVSYSILNFQDSRFTSARLPVQSYIWDIINPNTPDTELTPPSPLCCLRFNPKSTDTLVGGSYNGLVTFYDLRRQGG----GSPLESSVIEKSHHDPIYDVFWISSKTGNQCASVSTDGQMLWWDTRRLGEPVDKLLLNSDTKGSGMVLGGSSMEYNKEI-PTKYLVGTEQGIVLSLNLRNRKQNNGITVYDAGAGKHHGPIYSIQRNPTHNKFFMTVGDWTARIWMEDLKTPIMTTKY------------HSAYLTSGCWSPTRAGVFYVTRMDGVVDIWDYFYRQNEVAYSHK---------VGDAALSAISVSNG---SGRLVAVGDANGTVSLLEVCESLA-APQANEKNAIASMLERETKQEKNLELRDRDLRRAREKKDEXXXXXXXXXXXXXXAKMEEQLRTVDANFLNMIKEAEDDESKV 574          
BLAST of mRNA_H-elongata_contig6982.14628.1 vs. uniprot
Match: A0A8J2WWZ9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WWZ9_9STRA)

HSP 1 Score: 699 bits (1804), Expect = 8.420e-248
Identity = 361/515 (70.10%), Postives = 409/515 (79.42%), Query Frame = 1
Query:   28 SDVNRFRKKAEKDEDYKIAVKSLGPIIGRCMKQNNTIDIYEEYFDGDEMDHSSEPPSAKGLAVFRDPNGIKRTATSINWHPDGPTKIAVSYSILNFQDPRFMNTRMPGESYVWDTMNPNTPDVALMPPSPLCCLRFNPKSTDNLVGGSYNGLVNFFDLRKPGGTIGQAVPLETSVIEKSHHDPVYDVFWISSKTGNQCASVSTDGQMMWWDTRRLGEPTDTLQLATDSKGGGMVLGGSSMEYNQEAGPTKYLVGTEQGVVLQVNLRNRKQNNGISVFDTGPGKHHGPIYSIQRNPTHNKYFLTVGDWTARIWAEDLKTPIMTTKATKLHDFIFPSRGKSTYLTSGCFSPTRAGVFFVTRMDGVMDIWDYFYRQNEVAYSHKARKASGPMEVGDASLSSIAVQGNVQVGGKLVAVGDVNGTVSLLEVCESLALSAGSQEKGAIGAMFEREMKQEKNLELRERDLRRAKAVEQEAKSRAEAEQKDGKDQRMEELLRKVDADFLSMIKEAEDDDTKVA 1572
            +DV R+RKKAEKD+DYK  +K+LGPII RCM+QNNTIDIYEEYF G++ D SSEPPSAKGLAVFRDPN IKRTATSINWHP+GPTKIAVSYSILNFQDP+F N R+P ESY+WD  NPNTPD AL PPSPLCCLRFNPKSTD LVGGSYNGLV+F+DLRK G       P E SVIEKSHHDPVYD FWISSKTGNQCASVSTDG M+WWDTRRLGEP D LQL+T   G   VLGGS+M+Y++E  PTKY+VGTEQG+VL +NLRNRKQNNGI+V+D   GKHHGPIY+I RN TH K+F+TVGDWTAR+W EDLKTPIMTTK              S YLTSGC+S TRAGVFFVTRMDG++D+WDYFYRQNEVAY+HK         VGD +LSSIA   N    G+L++VGDV GTV+L+EVC+SLA +    EK AIGAM ERE KQEKNLELRERDLRRA+   +      E E+K+ K Q MEE LR VDADFL+MIKEAEDD+   A
Sbjct:   91 ADVQRYRKKAEKDDDYKANMKALGPIISRCMRQNNTIDIYEEYFAGEDRDWSSEPPSAKGLAVFRDPNEIKRTATSINWHPEGPTKIAVSYSILNFQDPKFSNARLPVESYIWDVTNPNTPDQALTPPSPLCCLRFNPKSTDTLVGGSYNGLVSFYDLRKSGA------PQECSVIEKSHHDPVYDCFWISSKTGNQCASVSTDGNMLWWDTRRLGEPVDALQLSTGKDGA--VLGGSAMDYHKEV-PTKYVVGTEQGIVLAINLRNRKQNNGIAVYDQNHGKHHGPIYAIHRNQTHTKFFMTVGDWTARVWMEDLKTPIMTTKY------------HSAYLTSGCWSSTRAGVFFVTRMDGIVDVWDYFYRQNEVAYTHK---------VGDCALSSIA---NDATTGRLLSVGDVEGTVALMEVCDSLA-TPQHNEKSAIGAMLERETKQEKNLELRERDLRRARDKAKGETGETE-EEKEAKAQAMEEQLRAVDADFLNMIKEAEDDEATAA 570          
BLAST of mRNA_H-elongata_contig6982.14628.1 vs. uniprot
Match: A0A7S2FLW6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FLW6_9STRA)

HSP 1 Score: 676 bits (1745), Expect = 9.540e-239
Identity = 348/515 (67.57%), Postives = 406/515 (78.83%), Query Frame = 1
Query:   25 QSDVNRFRKKAEKDEDYKIAVKSLGPIIGRCMKQNNTIDIYEEYFDGDEMDHSSEPPSAKGLAVFRDPNGIKRTATSINWHPDGPTKIAVSYSILNFQDPRFMNTRMPGESYVWDTMNPNTPDVALMPPSPLCCLRFNPKSTDNLVGGSYNGLVNFFDLRKPGGTIGQAVPLETSVIEKSHHDPVYDVFWISSKTGNQCASVSTDGQMMWWDTRRLGE-PTDTLQLATDSKGGGMVLGGSSMEYNQEAGPTKYLVGTEQGVVLQVNLRNRKQNNGISVFDTGPGKHHGPIYSIQRNPTHNKYFLTVGDWTARIWAEDLKTPIMTTKATKLHDFIFPSRGKSTYLTSGCFSPTRAGVFFVTRMDGVMDIWDYFYRQNEVAYSHKARKASGPMEVGDASLSSIAVQGNVQVGGKLVAVGDVNGTVSLLEVCESLALSAGSQEKGAIGAMFEREMKQEKNLELRERDLRRAKAVEQEAKSRAEAEQKDGKDQRMEELLRKVDADFLSMIKEAEDDDTK 1566
            Q+DVNRFRKKAEK EDY+ +V+++ PII  CMKQNNTIDIYE+YFDG E DHS EPP+AKGLAVFRDP   KR+ATSINWHP+GPTKIAVSYS+LNFQD   M ++   +S++WD  NPN PD  L P SPLCCLRFN K+TD +VGGSYNGL++++DLRK GG      P E S+IE SHHDPVYDVFW SSK+ + C SVSTDG M+WWDTR+L   PT+ L L+TDSKGGG +LGGSS+E+NQEAGPTKYLVGTEQGVVL VNLRN+K NNG++V+DTG GKHHGPIY+IQRN TH+K+FLTVGDWTARIW EDLKTPIMTTK                YLT GC+SPTR GVFFVTRMDGV+DIWDYFYRQNEVAYSHK         VGD  LSSIAV       G+ VAVGD+NGTVSLLE+C+SLA    + EK AI  M ERE KQEKNLE RE++LRRA+  + +A  R  +++KDGKD++MEELLRKVDADFL MIKEAEDD++K
Sbjct:   91 QADVNRFRKKAEKQEDYQESVQAIRPIIDCCMKQNNTIDIYEKYFDGVETDHSGEPPTAKGLAVFRDPEKSKRSATSINWHPEGPTKIAVSYSVLNFQDSNQMTSK---KSFIWDVHNPNIPDTTLCPSSPLCCLRFNHKATDTVVGGSYNGLISYYDLRKGGGG-----PAEESLIEHSHHDPVYDVFWTSSKSASMCVSVSTDGMMLWWDTRKLKSGPTEKLMLSTDSKGGGSILGGSSLEFNQEAGPTKYLVGTEQGVVLGVNLRNKKTNNGVTVYDTGAGKHHGPIYAIQRNLTHSKFFLTVGDWTARIWMEDLKTPIMTTKY------------HGAYLTGGCWSPTRTGVFFVTRMDGVVDIWDYFYRQNEVAYSHK---------VGDEQLSSIAVSAPY---GREVAVGDINGTVSLLELCDSLARQQPN-EKQAILNMLERETKQEKNLEAREKELRRARKEKDDADKRRASDKKDGKDEKMEELLRKVDADFLQMIKEAEDDESK 572          
BLAST of mRNA_H-elongata_contig6982.14628.1 vs. uniprot
Match: A0A067CMM6_SAPPC (Uncharacterized protein n=10 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CMM6_SAPPC)

HSP 1 Score: 655 bits (1689), Expect = 3.880e-230
Identity = 332/514 (64.59%), Postives = 393/514 (76.46%), Query Frame = 1
Query:   25 QSDVNRFRKKAEKDEDYKIAVKSLGPIIGRCMKQNNTIDIYEEYFDGDEMDHSSEPPSAKGLAVFRDPNGIKRTATSINWHPDGPTKIAVSYSILNFQDPRFMNTRMPGESYVWDTMNPNTPDVALMPPSPLCCLRFNPKSTDNLVGGSYNGLVNFFDLRKPGGTIGQAVPLETSVIEKSHHDPVYDVFWISSKTGNQCASVSTDGQMMWWDTRRLGEPTDTLQLATDSKGGGMVLGGSSMEYNQEAGPTKYLVGTEQGVVLQVNLRNRKQNNGISVFDTGPGKHHGPIYSIQRNPTHNKYFLTVGDWTARIWAEDLKTPIMTTKATKLHDFIFPSRGKSTYLTSGCFSPTRAGVFFVTRMDGVMDIWDYFYRQNEVAYSHKARKASGPMEVGDASLSSIAVQGNVQVGGKLVAVGDVNGTVSLLEVCESLALSAGSQEKGAIGAMFEREMKQEKNLELRERDLRRAKAVEQEAKSRAEAEQKDGKDQRMEELLRKVDADFLSMIKEAEDDDTK 1566
            Q+DV RFRKK EKD++YK AVK LGP+  R +KQNNTI+IY++YF       ++E PSAKGLAVFRDP  ++RT + I+WHP+ P ++A  Y ILNFQDP+F+N RMP  SY+WD +NPNTP+V L P SPLCCLR+NPKS D LVGGSYNGL++FFD+RK G +     P+ETS+IE SHHDPVYDVFWISSKTGNQC SVSTDG M+WWD R L +PT  + L+      G VLGGSSMEYN EAGPTKYLVGTEQG+VL VNLRN KQNNGI+V+DTG GKHHGPIY++QRNPTHNK+FLT+GDWTAR+W EDLKTPIM+T     HD         +Y+T+GC+SPTRAGVFFVTRMDGV+D+WD+FYRQN  AYSHK         VGD  LSSIAVQGN Q GGKLVAVGD NG +SLLEV + LA S  S EK AI  MFERE K+EKNLE RE++ +R KA   + K     E    KD++MEELLR VDA+FL+MIKEAED + K
Sbjct:   90 QNDVQRFRKKVEKDDEYKQAVKFLGPVAERGLKQNNTINIYQDYFAHMGEPATTEQPSAKGLAVFRDPESVRRTVSKIDWHPESPQRMAACYCILNFQDPKFVNARMPANSYIWDVLNPNTPEVVLKPLSPLCCLRYNPKSVDQLVGGSYNGLISFFDIRKSGSS-----PVETSMIEHSHHDPVYDVFWISSKTGNQCVSVSTDGSMLWWDIRHLAQPTHRIMLSDKD---GQVLGGSSMEYNTEAGPTKYLVGTEQGIVLSVNLRNIKQNNGITVYDTGAGKHHGPIYTVQRNPTHNKFFLTIGDWTARVWCEDLKTPIMSTT---YHD---------SYVTAGCWSPTRAGVFFVTRMDGVVDVWDFFYRQNVAAYSHK---------VGDVPLSSIAVQGNAQSGGKLVAVGDSNGMISLLEVSDGLA-SPQSNEKAAINGMFERETKREKNLEAREKEQKRKKATMDDGKVE---ELPSTKDEKMEELLRSVDANFLNMIKEAEDTENK 570          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6982.14628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH57_ECTSI0.000e+089.42Putative, Dynein intermediate chain n=1 Tax=Ectoca... [more]
A0A835ZH32_9STRA7.810e-29779.19Putative dynein intermediate chain n=1 Tax=Tribone... [more]
A0A7S2QVY7_9STRA1.010e-28075.96Hypothetical protein n=1 Tax=Triparma pacifica Tax... [more]
A0A7S2FI35_9STRA5.010e-26972.87Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6V1SU02_HETAK8.100e-26872.47Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3HCJ1_9STRA2.120e-26572.69Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
F0YQ52_AURAN2.030e-25872.18Uncharacterized protein n=2 Tax=Aureococcus anopha... [more]
A0A8J2WWZ9_9STRA8.420e-24870.10Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2FLW6_9STRA9.540e-23967.57Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A067CMM6_SAPPC3.880e-23064.59Uncharacterized protein n=10 Tax=Saprolegniaceae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6982contigH-elongata_contig6982:5472..10363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score728.0
Seed ortholog evalue3.1e-207
Seed eggNOG ortholog44056.XP_009033999.1
Preferred nameDNAI2
KEGG koko:K10409,ko:K11143
KEGG Pathwayko05016,map05016
GOsGO:0000003,GO:0000226,GO:0001539,GO:0001578,GO:0003008,GO:0003341,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005875,GO:0005886,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007320,GO:0007368,GO:0007389,GO:0007600,GO:0007605,GO:0007618,GO:0007620,GO:0008150,GO:0009605,GO:0009612,GO:0009628,GO:0009799,GO:0009855,GO:0009897,GO:0009986,GO:0009987,GO:0010996,GO:0015630,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019953,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0030425,GO:0031514,GO:0032501,GO:0032502,GO:0032504,GO:0032838,GO:0032991,GO:0034622,GO:0035082,GO:0036126,GO:0036157,GO:0036158,GO:0036477,GO:0040011,GO:0042995,GO:0043005,GO:0043025,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044706,GO:0044782,GO:0045503,GO:0045504,GO:0046692,GO:0048609,GO:0048856,GO:0048870,GO:0050877,GO:0050896,GO:0050954,GO:0051179,GO:0051674,GO:0051704,GO:0060271,GO:0060285,GO:0060294,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0071944,GO:0097014,GO:0097223,GO:0097447,GO:0097458,GO:0097729,GO:0098552,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902494
EggNOG free text desc.dynein heavy chain binding
EggNOG OGsKOG1587@1,KOG1587@2759
Ec32 ortholog descriptionputative, Dynein intermediate chain
Ec32 orthologEc-24_000630.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Hectar predicted targeting categoryother localisation
Exons11
Model size1575
Cds size1575
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931095.4397135-CDS-H-elongata_contig6982:5471..55341622931095.4397135-CDS-H-elongata_contig6982:5471..5534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6982 5472..5534 -
1691679695.9410877-CDS-H-elongata_contig6982:5471..55341691679695.9410877-CDS-H-elongata_contig6982:5471..5534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6982 5472..5534 -
1622931095.4571545-CDS-H-elongata_contig6982:6474..65881622931095.4571545-CDS-H-elongata_contig6982:6474..6588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6982 6475..6588 -
1691679695.954508-CDS-H-elongata_contig6982:6474..65881691679695.954508-CDS-H-elongata_contig6982:6474..6588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6982 6475..6588 -
1622931095.4741774-CDS-H-elongata_contig6982:7063..71591622931095.4741774-CDS-H-elongata_contig6982:7063..7159Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6982 7064..7159 -
1691679695.9642005-CDS-H-elongata_contig6982:7063..71591691679695.9642005-CDS-H-elongata_contig6982:7063..7159Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6982 7064..7159 -
1622931095.4932156-CDS-H-elongata_contig6982:7541..76461622931095.4932156-CDS-H-elongata_contig6982:7541..7646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6982 7542..7646 -
1691679695.9771001-CDS-H-elongata_contig6982:7541..76461691679695.9771001-CDS-H-elongata_contig6982:7541..7646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6982 7542..7646 -
1622931095.5162969-CDS-H-elongata_contig6982:7833..79871622931095.5162969-CDS-H-elongata_contig6982:7833..7987Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6982 7834..7987 -
1691679695.998532-CDS-H-elongata_contig6982:7833..79871691679695.998532-CDS-H-elongata_contig6982:7833..7987Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6982 7834..7987 -
1622931095.5319262-CDS-H-elongata_contig6982:8187..84171622931095.5319262-CDS-H-elongata_contig6982:8187..8417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6982 8188..8417 -
1691679696.0114393-CDS-H-elongata_contig6982:8187..84171691679696.0114393-CDS-H-elongata_contig6982:8187..8417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6982 8188..8417 -
1622931095.5466373-CDS-H-elongata_contig6982:8738..89411622931095.5466373-CDS-H-elongata_contig6982:8738..8941Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6982 8739..8941 -
1691679696.022221-CDS-H-elongata_contig6982:8738..89411691679696.022221-CDS-H-elongata_contig6982:8738..8941Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6982 8739..8941 -
1622931095.5663824-CDS-H-elongata_contig6982:9169..93351622931095.5663824-CDS-H-elongata_contig6982:9169..9335Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6982 9170..9335 -
1691679696.0322611-CDS-H-elongata_contig6982:9169..93351691679696.0322611-CDS-H-elongata_contig6982:9169..9335Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6982 9170..9335 -
1622931095.5833046-CDS-H-elongata_contig6982:9587..97291622931095.5833046-CDS-H-elongata_contig6982:9587..9729Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6982 9588..9729 -
1691679696.0443032-CDS-H-elongata_contig6982:9587..97291691679696.0443032-CDS-H-elongata_contig6982:9587..9729Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6982 9588..9729 -
1622931095.6038916-CDS-H-elongata_contig6982:9845..99971622931095.6038916-CDS-H-elongata_contig6982:9845..9997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6982 9846..9997 -
1691679696.0549543-CDS-H-elongata_contig6982:9845..99971691679696.0549543-CDS-H-elongata_contig6982:9845..9997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6982 9846..9997 -
1622931095.6227205-CDS-H-elongata_contig6982:10213..103631622931095.6227205-CDS-H-elongata_contig6982:10213..10363Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6982 10214..10363 -
1691679696.0627768-CDS-H-elongata_contig6982:10213..103631691679696.0627768-CDS-H-elongata_contig6982:10213..10363Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6982 10214..10363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6982.14628.1prot_H-elongata_contig6982.14628.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6982 5472..10363 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6982.14628.1

>prot_H-elongata_contig6982.14628.1 ID=prot_H-elongata_contig6982.14628.1|Name=mRNA_H-elongata_contig6982.14628.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=525bp
MPSRSILLQSDVNRFRKKAEKDEDYKIAVKSLGPIIGRCMKQNNTIDIYE
EYFDGDEMDHSSEPPSAKGLAVFRDPNGIKRTATSINWHPDGPTKIAVSY
SILNFQDPRFMNTRMPGESYVWDTMNPNTPDVALMPPSPLCCLRFNPKST
DNLVGGSYNGLVNFFDLRKPGGTIGQAVPLETSVIEKSHHDPVYDVFWIS
SKTGNQCASVSTDGQMMWWDTRRLGEPTDTLQLATDSKGGGMVLGGSSME
YNQEAGPTKYLVGTEQGVVLQVNLRNRKQNNGISVFDTGPGKHHGPIYSI
QRNPTHNKYFLTVGDWTARIWAEDLKTPIMTTKATKLHDFIFPSRGKSTY
LTSGCFSPTRAGVFFVTRMDGVMDIWDYFYRQNEVAYSHKARKASGPMEV
GDASLSSIAVQGNVQVGGKLVAVGDVNGTVSLLEVCESLALSAGSQEKGA
IGAMFEREMKQEKNLELRERDLRRAKAVEQEAKSRAEAEQKDGKDQRMEE
LLRKVDADFLSMIKEAEDDDTKVAE
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mRNA from alignment at H-elongata_contig6982:5472..10363-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6982.14628.1 ID=mRNA_H-elongata_contig6982.14628.1|Name=mRNA_H-elongata_contig6982.14628.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4892bp|location=Sequence derived from alignment at H-elongata_contig6982:5472..10363- (Himanthalia elongata Himel1 dioecious)
ATGCCGTCACGGTCTATTTTGTTGCAGTCCGACGTAAACCGCTTCCGAAA GAAGGCGGAGAAGGACGAAGACTACAAGATTGCGGTCAAGAGCCTTGGGC CGATCATTGGGCGGTGCATGAAGCAAAACAACACCATAGATATTTACGAA GTGAGAGGGGGGGGGGGATGCATAGAGCTATAGCTAGCGACCATGTTTCT CAATTTTGCTTGAATGATCCTTCGCGTGACGTGTCATGTGCCATTAGCGG GCGCCATTTAGTCGATTGCAGATCGATCAAATTTTAAGTGTCGGTAAGGA TCGGGCCAGCAATTTCACCTCATATCTCTTAGCTGAGAGTTCAATTTATG CCTTCGCGCTTACTAGGAATACTTCGACGGAGACGAGATGGATCACTCCA GTGAGCCTCCCAGCGCTAAAGGGTTGGCGGTTTTCCGCGATCCGAACGGT ATCAAGAGGACTGCAACGTCTATCAACTGGCATCCGGACGGGCCAACGAA GATTGCCGTCTCATACAGGTGGAGCTGCAGGTTATATATTTTGTATGTAT TTATTTTCATGCTGGATGCTCGCTAACTAACGTACTTACGTGAGCCCTCT CGGCGTTCAAAATACAATGTGTTCTGCTCCGTAGTATCCTGAACTTCCAA GACCCGAGGTTCATGAACACGCGGATGCCGGGGGAGTCTTACGTTTGGGA CACTATGAACCCTAACACTCCAGACGTGGCGTTGATGCCACCCAGTCCAC TTTGCTGTCTGCGTTTTAATCCGAAGGTGGGTTAAGGAGGGCGAGGAGAG TGAAAAGTTCCCTTTTGCCTCGGACATATAATTTCTTTTCAGGGTTATAC TGTAATGATAATGATCGAGAGAGTTTTTATTCGGTACGATCGCTCGCGTA GGCTTCGTATTGCCTCTAAACTCGAACGATCACATCATGTTGATATTAGA GGATTACTAATAATTACTCTTCTACCCATCAGCTTTTTTAGGCATCCGGT CTCCTTTGTTTGGATTAATTTTCAACAGAGCACCGACAACCTCGTCGGTG GGTCATACAATGGATTGGTCAATTTCTTCGACCTCCGGAAGCCTGGCGGC ACAATTGGTCAGGCGGTGCCGCTTGAGACGTCCGTGATCGAAAAGAGTCA CCACGACCCCGTTTACGATGTCTTCTGGATATCCTCCAAGACAGGTTAGT GGATATGCCGTCTCCCAACCGAGCTTGGAGTTATATAGGTATGGAGCGGG TGGTTTAGAATGATTACAATGATTACAATGATTGCAAAAATTGTGTTCCC AAGAGAAAAAATAAACTGAGCGTTTCCGATATGAAGATATCATTGCGGCC AATTCTCGAATTCGGTAGTGAATTCGCTCAGCGATGGTTTGTTGCGCTCC ATCTTTGTACTTCGGGAGGCAGGTAACCAGTGTGCATCCGTATCGACGGA CGGCCAGATGATGTGGTGGGATACTCGAAGATTAGGGGAGCCAACAGATA CGTTGCAACTGGCGACGGACTCCAAGGGGGGCGGTATGGTGTTAGGTGGT AGTTCTATGGAGTATAATCAGGAGGCGGGCCCGACTAAGTATTTGGTTGG CACGGAGCAAGGTGTTGTTTTGCAGGTGAGGAACGCCTTGATTTCATTGT CGAAAGAAAAGAAGGTTAACAGCGTTTGGCACTCACTTCAAGATTTCGGA GGACTTAGGGAAGCTGGGAAAGATCCACTCTCTGGACTTACGCTTCAAAT CTTGAGAGGAATAAATAAGACTCAAGACAATTATACAGTACATGGAGTGG GACACAGATGTTGTACTTGTTTCCATGGTATATATTTCAGAATTGGTTCT CGTTCGGTTGAAACACCACTACCGGTACATCTCGGTCGTACTTCGCCCTT TAGTGCATAGTGTATACGGTTGTTTCTTTTGTTGTTTTCAATCAAGGTAA ACCTTCGCAACCGAAAGCAGAACAATGGAATCAGCGTCTTCGATACGGGA CCTGGCAAGCACCATGGCCCCATCTACAGCATTCAGCGCAACCCTACTCA TAACAAGTATTTCCTGACTGTTGGAGATTGGACGGCGAGAATATGGGCGG AAGATCTCAAGACTCCCATCATGACCACAAAGGCAACCAAGCTCCACGAT TTCATATTTCCATCCCGTGGTAAATCGTCACGTAGGCTTACGGGTTTGCG ACCTTCCGGAAATGGTTTTCAACGAGTTCAACGAGTGGGATGTGTCATAA GCATCGGCGTAAGGACGTTACGTAAGGTCTAACACTCCGGAATATTTTGC ATCGGTGCTCATGACTCTTAAAATTCGATGGCATTGCCATACGTGACGCA CAAATTCCCCATCTTCAGTATCACAGCACGTACCTCACGAGCGGCTGTTT CAGTCCGACGAGGGCAGGGGTGTTCTTTGTGACGAGAATGGACGGTGTGA TGGATATATGGGACTACTTCTACCGACAAAACGAAGTCGCTTACAGTCAC AAGGCGAGAAAAGCAAGCGGACCCATGGAGGTTGCGCACAAACGTATGAC GCATTGCGATAACCGCGAGCCGCGACGTAATTCACTCAAATCAAGGCCTA TTTTAAGCTCCAACGTTGGGATAGTATTTAGTTTGTGTCGCCGTCATGGG CCGTCGAGATATAGCTTCAACAACAACAAAAACAATCAATGACGACGTGC CTCAACTGGGCAACCAGGTGGGAGATGCCTCTCTTAGTTCCATAGCGGTG CAAGGGAATGTGCAAGTCGGAGGGAAGTTGGTTGCGGTCGGAGATGTAAA CGGCACGGTGTCGCTTCTGGAGGTGAGCTACAACACCAAGACCAGTAGGT TCTATCACGTGGGGCTGCTTACGTGGATGGGCGTCTCTGTTAATGATAAC CTGCCACCGTTTTTTACAGTATTTTTCGGAATCCCGTGTGAAATACATGT GACTCCATCAAATGTATTGAGATAATTACATGCACGAGAACAGAAACGAC GAGTGCAGGGTGAAATACCAAGGCTGGGGGGAAGGGCGCGTCGTAAATCT TTTTCATTCCTGAGCGATATAGCGCTATAGTGTTGAATGCAGTATTACTC CGCCGAAGACACTTCGCGACACGAACTAGTGTTCGCAGCATATCTTAACC AACTCTACCTTAGGTACTGTTACGTCAGCCGGAAATGTTGCACCCCCGCC ACAGGTTTGCGAGTCCTTGGCTTTGAGCGCGGGTAGCCAGGAGAAAGGAG CAATTGGCGCCATGTTCGAGCGCGAGATGAAGCAGGAGAAAAACCTCGAG GTGACGTAACTACGCGCATCTTAAGCTAGGAAGGCGCGTCCTCGTTGAAA AAAATCAAATATATTAGCTCTCATTAAATGTTAATCCAGTTTGCGACGCG TCCCTTCAATTCATCAGTGCTCCTCATCAGTACTTACGTCCGTAAGGCAA AATAAAAGGGTTATTGATGTATCTGTGCCAGGAAATTAACTAGATCGGTA TTACTATTGTGAGTACCACTTACAGACTACGAGTGCACTGCCCCAATCCA GTTTTGGTCGCTCTATTATATTGGTAAGAGCACCGGGATCATCACGATTA ACGTCTAACGTCAGGATAAATTCCCCATTCCTGGTTGAATGGCACCCCAA GCTTGGGTACGCAAATGATCCCATCCACCCTTGAGTGTCGGAGGAAACTA TATTTCAAATTTCATACGTTATGTTTACTGAACATGTTAAGAAAATAACC AAGTGAAATATTTTGATTGCATCAGCTGAGAGAAAGGGACTTGAGGCGGG CGAAGGCGGTGGAACAGGAGGCCAAGAGCAGGGCTGAAGCAGAGCAAAAG GATGGGAAGGACCAGAGGATGGAAGAGCTTCTACGAAAGGTAACGAGTGC CCGAGAAGCGAGGATATATTTTTTTCGGCGGGGCGGGGATGGTAGGGGCA ACGCATTCTTCGTGAAATGGCGGGTGGGATTGGGGCGGGGTAGAAATAAA AGGGCTTGACAACGCGTTCCGACGTTCGAGCTGAAAATGACATGACTTAC GATGGAGAATTATGTGTAACAAGGTGGTGCATATGAGCACGAGGAAGACT GCTCGCTATAGATCGTATGCCCCACCTTGTAATAAACCAATCTATATCGT GGCACATCGTACATGGGCAGCCGCTAATCCATACATACACCCTGTCTACG ACAAAGTAGCCAGCAGCTTTCGTCGCGCATTTCTCATTGAGGTGAAAAAT GCCGCTTTGAATGCCGCTTTTCACATAAGAAATAGATGAAAGTGTGAAAC TTAGTAGAGCTCTAGATCTTGCACGGCGAATAGCGTGTTGCTCTAATATA ATACCATATGGAATACAGATAAATATTAAATATGATGCCAGTTTGAAGTG TCAGTATTAATAGGACTTCTACCATTCCTCGAAATAAATATTAATACACC CCCAAGAAATTGTCACCAATACCTCTACCTGGGACTCTCCGGTAGAATGC AGTGTAATGGTGTAAAAAACAATATGGATACCAGCTCCCCGGAAATAAGT GTACCCCAGATCTTCTCGGCATGTCGAGCTACTCCATGCAGTCAGCAAGA GCAAACTATGTACCCATTCGAACCTTACGCTAGTTGGTACCCTGGATTAC ACCTCTCACGGTGCTAAGGTGGTGGATATTCGGAGGGTTGTAATGAATTC ATGTTTTTTTAAAGAAAACGCTGCCGATTTGGGGAGATCTCGATAGAAAT GTCGCTTCACCCCGTTCAGCATGTACTACTGTTTCCATACCACCGTCGGA TCACGCACTGACATGATCTTGTCGCCCAGGTGGATGCCGACTTTTTGTCG ATGATCAAGGAGGCGGAGGATGACGACACCAAGGTGGCGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig6982:5472..10363-

>mRNA_H-elongata_contig6982.14628.1 ID=mRNA_H-elongata_contig6982.14628.1|Name=mRNA_H-elongata_contig6982.14628.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3150bp|location=Sequence derived from alignment at H-elongata_contig6982:5472..10363- (Himanthalia elongata Himel1 dioecious)
ATGCCGTCACGGTCTATTTTGTTGCAGTCCGACGTAAACCGCTTCCGAAA
GAAGGCGGAGAAGGACGAAGACTACAAGATTGCGGTCAAGAGCCTTGGGC
CGATCATTGGGCGGTGCATGAAGCAAAACAACACCATAGATATTTACGAA
ATGCCGTCACGGTCTATTTTGTTGCAGTCCGACGTAAACCGCTTCCGAAA
GAAGGCGGAGAAGGACGAAGACTACAAGATTGCGGTCAAGAGCCTTGGGC
CGATCATTGGGCGGTGCATGAAGCAAAACAACACCATAGATATTTACGAA
GAATACTTCGACGGAGACGAGATGGATCACTCCAGTGAGCCTCCCAGCGC
TAAAGGGTTGGCGGTTTTCCGCGATCCGAACGGTATCAAGAGGACTGCAA
CGTCTATCAACTGGCATCCGGACGGGCCAACGAAGATTGCCGTCTCATAC
AGGAATACTTCGACGGAGACGAGATGGATCACTCCAGTGAGCCTCCCAGC
GCTAAAGGGTTGGCGGTTTTCCGCGATCCGAACGGTATCAAGAGGACTGC
AACGTCTATCAACTGGCATCCGGACGGGCCAACGAAGATTGCCGTCTCAT
ACAGTATCCTGAACTTCCAAGACCCGAGGTTCATGAACACGCGGATGCCG
GGGGAGTCTTACGTTTGGGACACTATGAACCCTAACACTCCAGACGTGGC
GTTGATGCCACCCAGTCCACTTTGCTGTCTGCGTTTTAATCCGAAGTATC
CTGAACTTCCAAGACCCGAGGTTCATGAACACGCGGATGCCGGGGGAGTC
TTACGTTTGGGACACTATGAACCCTAACACTCCAGACGTGGCGTTGATGC
CACCCAGTCCACTTTGCTGTCTGCGTTTTAATCCGAAGAGCACCGACAAC
CTCGTCGGTGGGTCATACAATGGATTGGTCAATTTCTTCGACCTCCGGAA
GCCTGGCGGCACAATTGGTCAGGCGGTGCCGCTTGAGACGTCCGTGATCG
AAAAGAGTCACCACGACCCCGTTTACGATGTCTTCTGGATATCCTCCAAG
ACAGAGCACCGACAACCTCGTCGGTGGGTCATACAATGGATTGGTCAATT
TCTTCGACCTCCGGAAGCCTGGCGGCACAATTGGTCAGGCGGTGCCGCTT
GAGACGTCCGTGATCGAAAAGAGTCACCACGACCCCGTTTACGATGTCTT
CTGGATATCCTCCAAGACAGGTAACCAGTGTGCATCCGTATCGACGGACG
GCCAGATGATGTGGTGGGATACTCGAAGATTAGGGGAGCCAACAGATACG
TTGCAACTGGCGACGGACTCCAAGGGGGGCGGTATGGTGTTAGGTGGTAG
TTCTATGGAGTATAATCAGGAGGCGGGCCCGACTAAGTATTTGGTTGGCA
CGGAGCAAGGTGTTGTTTTGCAGGTAACCAGTGTGCATCCGTATCGACGG
ACGGCCAGATGATGTGGTGGGATACTCGAAGATTAGGGGAGCCAACAGAT
ACGTTGCAACTGGCGACGGACTCCAAGGGGGGCGGTATGGTGTTAGGTGG
TAGTTCTATGGAGTATAATCAGGAGGCGGGCCCGACTAAGTATTTGGTTG
GCACGGAGCAAGGTGTTGTTTTGCAGGTAAACCTTCGCAACCGAAAGCAG
AACAATGGAATCAGCGTCTTCGATACGGGACCTGGCAAGCACCATGGCCC
CATCTACAGCATTCAGCGCAACCCTACTCATAACAAGTATTTCCTGACTG
TTGGAGATTGGACGGCGAGAATATGGGCGGAAGATCTCAAGACTCCCATC
ATGACCACAAAGGCAACCAAGCTCCACGATTTCATATTTCCATCCCGTGG
TAAATCGTAAACCTTCGCAACCGAAAGCAGAACAATGGAATCAGCGTCTT
CGATACGGGACCTGGCAAGCACCATGGCCCCATCTACAGCATTCAGCGCA
ACCCTACTCATAACAAGTATTTCCTGACTGTTGGAGATTGGACGGCGAGA
ATATGGGCGGAAGATCTCAAGACTCCCATCATGACCACAAAGGCAACCAA
GCTCCACGATTTCATATTTCCATCCCGTGGTAAATCCACGTACCTCACGA
GCGGCTGTTTCAGTCCGACGAGGGCAGGGGTGTTCTTTGTGACGAGAATG
GACGGTGTGATGGATATATGGGACTACTTCTACCGACAAAACGAAGTCGC
TTACAGTCACAAGGCGAGAAAAGCAAGCGGACCCATGGAGCACGTACCTC
ACGAGCGGCTGTTTCAGTCCGACGAGGGCAGGGGTGTTCTTTGTGACGAG
AATGGACGGTGTGATGGATATATGGGACTACTTCTACCGACAAAACGAAG
TCGCTTACAGTCACAAGGCGAGAAAAGCAAGCGGACCCATGGAGGTGGGA
GATGCCTCTCTTAGTTCCATAGCGGTGCAAGGGAATGTGCAAGTCGGAGG
GAAGTTGGTTGCGGTCGGAGATGTAAACGGCACGGTGTCGCTTCTGGAGG
TGGGAGATGCCTCTCTTAGTTCCATAGCGGTGCAAGGGAATGTGCAAGTC
GGAGGGAAGTTGGTTGCGGTCGGAGATGTAAACGGCACGGTGTCGCTTCT
GGAGGTTTGCGAGTCCTTGGCTTTGAGCGCGGGTAGCCAGGAGAAAGGAG
CAATTGGCGCCATGTTCGAGCGCGAGATGAAGCAGGAGAAAAACCTCGAG
GTTTGCGAGTCCTTGGCTTTGAGCGCGGGTAGCCAGGAGAAAGGAGCAAT
TGGCGCCATGTTCGAGCGCGAGATGAAGCAGGAGAAAAACCTCGAGCTGA
GAGAAAGGGACTTGAGGCGGGCGAAGGCGGTGGAACAGGAGGCCAAGAGC
AGGGCTGAAGCAGAGCAAAAGGATGGGAAGGACCAGAGGATGGAAGAGCT
TCTACGAAAGCTGAGAGAAAGGGACTTGAGGCGGGCGAAGGCGGTGGAAC
AGGAGGCCAAGAGCAGGGCTGAAGCAGAGCAAAAGGATGGGAAGGACCAG
AGGATGGAAGAGCTTCTACGAAAGGTGGATGCCGACTTTTTGTCGATGAT
CAAGGAGGCGGAGGATGACGACACCAAGGTGGCGGAGGTGGATGCCGACT
TTTTGTCGATGATCAAGGAGGCGGAGGATGACGACACCAAGGTGGCGGAG
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