mRNA_H-elongata_contig69701.14620.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig69701.14620.1 vs. uniprot
Match: D8LJP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJP2_ECTSI) HSP 1 Score: 238 bits (606), Expect = 4.850e-77 Identity = 126/156 (80.77%), Postives = 133/156 (85.26%), Query Frame = 1
Query: 1 MGTWTEGLVGVSLIAIGLLGLKESLLEQEEAPAFEAKSAGSAVVEGGGVGRLSDTKGSG---RAIFLNGVLHGFSWDGAPSLAPALALSSWASVLWFLLAYCSGTMVAMSATTTVIGEGSLRVGKALDKPDIPRKLSIVSSFVAIAIGTLWFAKAV 459
MG+WTEGLVGVSLIAIGLLGLKESLL+ EE PAFEAKSAGSAVVEG RAIF NGVLHGFSWDGAPSLAPALALSSW SVLWFLLAYCSGTMVAMSATTT+IGEGS+RVGKALD+PDIPRKLS+VSSFVAI IG +W AKAV
Sbjct: 80 MGSWTEGLVGVSLIAIGLLGLKESLLDYEETPAFEAKSAGSAVVEGXXXXXXXXXXXXXXGERAIFFNGVLHGFSWDGAPSLAPALALSSWGSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSVVSSFVAITIGAVWLAKAV 235
BLAST of mRNA_H-elongata_contig69701.14620.1 vs. uniprot
Match: A0A835YVB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVB1_9STRA) HSP 1 Score: 183 bits (465), Expect = 9.760e-56 Identity = 96/152 (63.16%), Postives = 116/152 (76.32%), Query Frame = 1
Query: 1 MGTWTEGLVGVSLIAIGLLGLKESLLEQEEAPAFEAKSAGSAVVEGGGVGRLSDTKGSGRAIFLNGVLHGFSWDGAPSLAPALALSSWASVLWFLLAYCSGTMVAMSATTTVIGEGSLRVGKALDKPDIPRKLSIVSSFVAIAIGTLWFAKA 456
+GT+TE LVGVSLI IGL+GLKESLL++ A +A E G + G RAIFLNG+LHGFSWDGAPSLAPALA ++W VLWFLLAYC GTM AMSA TT+IGEGS+RVG+AL++PDIP++LS+VSS +AIAIG +W KA
Sbjct: 77 LGTYTEVLVGVSLITIGLIGLKESLLDKPH-----EDDAAAAASEISGEKSPAKRGGGQRAIFLNGLLHGFSWDGAPSLAPALACTTWHGVLWFLLAYCGGTMAAMSAATTIIGEGSVRVGQALEQPDIPKRLSVVSSGIAIAIGAVWLVKA 223
BLAST of mRNA_H-elongata_contig69701.14620.1 vs. uniprot
Match: A0A4D9DEM4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DEM4_9STRA) HSP 1 Score: 146 bits (369), Expect = 3.850e-41 Identity = 77/153 (50.33%), Postives = 106/153 (69.28%), Query Frame = 1
Query: 1 MGTWTEGLVGVSLIAIGLLGLKESL-LEQEEAPAFEAKSAGSAVVEGGGVGRLSDTKGSGRAIFLNGVLHGFSWDGAPSLAPALALSSWASVLWFLLAYCSGTMVAMSATTTVIGEGSLRVGKALDKPDIPRKLSIVSSFVAIAIGTLWFAKA 456
+ +TE L+GVSLI IGLLGLKE+ + EA+ + + G + K +G+A+FLNG+LHGFSWDG P+LAPALA SW V+ FL +Y GTM++MS T++IGEG+++VG+ALDKP+IP+KL+ SS VAI +G +W KA
Sbjct: 87 LSLYTEVLIGVSLIIIGLLGLKEAAHFDVSAVMPLEAEGS----IAGSAASGAAKKKATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKA 235
BLAST of mRNA_H-elongata_contig69701.14620.1 vs. uniprot
Match: W7TPT7_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPT7_9STRA) HSP 1 Score: 149 bits (375), Expect = 1.010e-40 Identity = 78/153 (50.98%), Postives = 107/153 (69.93%), Query Frame = 1
Query: 1 MGTWTEGLVGVSLIAIGLLGLKESL-LEQEEAPAFEAKSAGSAVVEGGGVGRLSDTKGSGRAIFLNGVLHGFSWDGAPSLAPALALSSWASVLWFLLAYCSGTMVAMSATTTVIGEGSLRVGKALDKPDIPRKLSIVSSFVAIAIGTLWFAKA 456
+ +TE L+GVSLI IGLLGLKE+ + EA+ + + G G + K +G+A+FLNG+LHGFSWDG P+LAPALA SW V+ FL +Y GTM++MS T++IGEG+++VG+ALDKP+IP+KL+ SS VAI +G +W KA
Sbjct: 211 LSLYTEVLIGVSLIIIGLLGLKEAAHFDVSAVMPLEAEGS----ITGSGASGAAKKKATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKA 359
BLAST of mRNA_H-elongata_contig69701.14620.1 vs. uniprot
Match: A0A7S2KN96_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KN96_9STRA) HSP 1 Score: 139 bits (350), Expect = 3.960e-39 Identity = 78/164 (47.56%), Postives = 106/164 (64.63%), Query Frame = 1
Query: 4 GTWTEGLVGVSLIAIGLLGLKESLLEQEEAPAFEAKSAGSAVVEGGGVGR-------------LSDTKGSGRAIFLNGVLHGFSWDGAPSLAPALALSSWASVLWFLLAYCSGTMVAMSATTTVIGEGSLRVGKALDKPDIPRKLSIVSSFVAIAIGTLWFAKA 456
G++ E +GVSLI IGLLG+KE+ ++ EAP + +G +V GG G +SD K RA+ NG+LHGFSWDGAPSLAPA+A+++W L FLL+Y GTM AM+ TT+IGEG+ R LD+PD+PR LS+ SSF+A+ +G +W A
Sbjct: 12 GSFMELAIGVSLIVIGLLGIKEA--KEWEAP----EDSGCDIVGEGGEGSSSSPQSLSAAAAPVSDAK---RAVLFNGILHGFSWDGAPSLAPAVAIATWRGSLTFLLSYALGTMAAMALATTIIGEGTRRAAGKLDRPDLPRDLSVASSFLALVVGIVWCGLA 166
BLAST of mRNA_H-elongata_contig69701.14620.1 vs. uniprot
Match: A0A7S2WPQ8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WPQ8_9STRA) HSP 1 Score: 140 bits (354), Expect = 1.820e-38 Identity = 77/150 (51.33%), Postives = 103/150 (68.67%), Query Frame = 1
Query: 7 TWTEGLVGVSLIAIGLLGLKESLLEQEEAPAFEAKSAGSAVVEGGGVGRLSDTKGSGRAIFLNGVLHGFSWDGAPSLAPALALSSWASVLWFLLAYCSGTMVAMSATTTVIGEGSLRVGKALDKPDIPRKLSIVSSFVAIAIGTLWFAKA 456
++ E VG SLI IGLLG+KE+ +EE +S +A + VG S K RA+ NGVLHGFSWDGAPSLAPA+A+++W + FLL+Y GT+ AM+ TTT+IGEG+LR G+A ++PDIP+KLS SS +AI +G +WF A
Sbjct: 129 SFMELAVGASLIFIGLLGIKEAREWKEEIGNVVPQSLSAAAAD---VGAKSSPK---RAVIFNGVLHGFSWDGAPSLAPAVAVATWRGSISFLLSYALGTIAAMAITTTLIGEGTLRAGEAFNRPDIPQKLSFASSILAIGVGFVWFFLA 272
BLAST of mRNA_H-elongata_contig69701.14620.1 vs. uniprot
Match: A0A7R9ZRD8_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZRD8_9STRA) HSP 1 Score: 135 bits (341), Expect = 1.830e-37 Identity = 73/149 (48.99%), Postives = 98/149 (65.77%), Query Frame = 1
Query: 13 TEGLVGVSLIAIGLLGLKESL-LEQEEAPAFEAKSAGSAVVEGGGVGRLSDTKGSGRAIFLNGVLHGFSWDGAPSLAPALALSSWASVLWFLLAYCSGTMVAMSATTTVIGEGSLRVGKALDKPDIPRKLSIVSSFVAIAIGTLWFAKA 456
TE VG+SLI IG++G++E+ E E P AKS +A + ++ R++ NG+LHGFSWDGAPSLAPALAL++W L FL +Y +GTM AM+ TTT+IGEG+ R + +PDIP+KLS SS +AIAIG +W A
Sbjct: 46 TEIAVGLSLIIIGVMGIREAREFEAEAGPVVSAKSLSAAANSDANIKPSTN-----RSVIFNGLLHGFSWDGAPSLAPALALATWGGNLAFLSSYAAGTMAAMAVTTTLIGEGTRRASEVFQRPDIPQKLSFFSSLLAIAIGVIWCGLA 189
BLAST of mRNA_H-elongata_contig69701.14620.1 vs. uniprot
Match: A0A1Z5K0A1_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K0A1_FISSO) HSP 1 Score: 135 bits (339), Expect = 1.130e-36 Identity = 73/149 (48.99%), Postives = 99/149 (66.44%), Query Frame = 1
Query: 13 TEGLVGVSLIAIGLLGLKESLLEQEEAPAFEAKSAGSAVVEGGGVGRLSDTKGSGRAIFLNGVLHGFSWDGAPSLAPALALSSWASVLWFLLAYCSGTMVAMSATTTVIGEGSLRVGKALDKPDIPRKLSIVSSFVAIAIGTLWFAKAV 459
TE VG+SLI IG++G++E+ +++ A + SA V + S K RA+ NG+LHGFSWDGAPSLAPA+A+++W L FL AY GTM M+ TT+IGEG+ + G+ LD+PDIP+KLS VSS +AI IG +W AV
Sbjct: 87 TEIAVGLSLIVIGVMGIREAREWEQDLTTTMASQSLSAAVVDQVASKHSTQK---RAVLFNGILHGFSWDGAPSLAPAVAVATWGGSLAFLSAYAVGTMTTMALATTLIGEGTRKAGQVLDRPDIPQKLSFVSSILAIVIGAVWCYLAV 232
BLAST of mRNA_H-elongata_contig69701.14620.1 vs. uniprot
Match: A0A7S4J5J5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J5J5_9STRA) HSP 1 Score: 134 bits (338), Expect = 2.550e-36 Identity = 77/154 (50.00%), Postives = 98/154 (63.64%), Query Frame = 1
Query: 16 EGLVGVSLIAIGLLGLKESLLEQEEAPAFEAKSAGSAVVEGGGVGRLSDTKGSG-------RAIFLNGVLHGFSWDGAPSLAPALALSSWASVLWFLLAYCSGTMVAMSATTTVIGEGSLRVGKALDKPDIPRKLSIVSSFVAIAIGTLWFAKA 456
E VG SL+ IGLLG+KE A +EA+ +EGG LS G RA+ NGVLHGFSWDGAPSLAPA+A+++W + FLLAY GTM AM+ TTT+IGEG+ + G+ L +PDIP+KLS VSS +AI +G W + A
Sbjct: 109 EVAVGASLVFIGLLGIKE-------AREWEAE------IEGGSPQSLSAAAGEDGVKVAQKRAVVFNGVLHGFSWDGAPSLAPAVAVATWRGNITFLLAYALGTMAAMTITTTLIGEGTRKAGEVLHRPDIPQKLSFVSSIIAIGVGLFWCSLA 249
BLAST of mRNA_H-elongata_contig69701.14620.1 vs. uniprot
Match: A0A7S2Y0T2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0T2_9STRA) HSP 1 Score: 135 bits (340), Expect = 5.030e-36 Identity = 78/155 (50.32%), Postives = 102/155 (65.81%), Query Frame = 1
Query: 1 MGTWTEGLVGVSLIAIGLLGLKESLLEQEEAPAFEAKSAGSAVVEGGGVGRLSDTK-GSGRAIFLNGVLHGFSWDGAPSLAPALALSSWASVLWFLLAYCSGTMVAMSATTTVIGEGSLRVGKALDKPDIPRKLSIVSSFVAIAIGTLWFAKAVL 462
+ TWTE LVG+SLI IG LG+KES + A + K + + S K GS ++IF NG+LHG SWDG PSLAPALA ++W V+ FL AYC G +V+MS T++IGEGS+RVG+ D P IP++LS+ SS +AI IG LW K +L
Sbjct: 166 LSTWTEILVGLSLILIGFLGVKESRSFDSDKAAAKEK-----------LEQESGKKTGSFKSIFFNGLLHGLSWDGTPSLAPALAFTTWRPVVGFLSAYCWGVVVSMSMCTSLIGEGSVRVGR--DNPKIPQQLSMFSSGLAIVIGLLWTGKGIL 307 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69701.14620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig69701.14620.1 >prot_H-elongata_contig69701.14620.1 ID=prot_H-elongata_contig69701.14620.1|Name=mRNA_H-elongata_contig69701.14620.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp MGTWTEGLVGVSLIAIGLLGLKESLLEQEEAPAFEAKSAGSAVVEGGGVGback to top mRNA from alignment at H-elongata_contig69701:1545..2516- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig69701.14620.1 ID=mRNA_H-elongata_contig69701.14620.1|Name=mRNA_H-elongata_contig69701.14620.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=972bp|location=Sequence derived from alignment at H-elongata_contig69701:1545..2516- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig69701:1545..2516- >mRNA_H-elongata_contig69701.14620.1 ID=mRNA_H-elongata_contig69701.14620.1|Name=mRNA_H-elongata_contig69701.14620.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at H-elongata_contig69701:1545..2516- (Himanthalia elongata Himel1 dioecious)back to top |