mRNA_H-elongata_contig69699.14619.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69699.14619.1
Unique NamemRNA_H-elongata_contig69699.14619.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig69699.14619.1 vs. uniprot
Match: D7FTB8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTB8_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 2.280e-14
Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    4 ELERDLEEILCGRRPRVFGELPTRLGNFVRLCPATAAHRHALRLRRQVIR 153
            +LE DL++IL GRRPR  GELP R+GNFVRLCP TAAHR A RLRR+VIR
Sbjct: 1097 DLESDLDQILRGRRPRQVGELPARMGNFVRLCPGTAAHRRARRLRRKVIR 1146
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BLAST of mRNA_H-elongata_contig69699.14619.1 vs. uniprot
Match: A0A8K1CA65_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CA65_PYTOL)

HSP 1 Score: 49.3 bits (116), Expect = 2.100e-5
Identity = 22/50 (44.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:    4 ELERDLEEILCGRRPRVFGELPTRLGNFVRLCPATAAHRHALRLRRQVIR 153
            +L  DL EIL GR PR++GE+P  LG + RLCP T  +   ++L++  +R
Sbjct:  992 QLNEDLTEILHGRVPRLYGEVPEHLGRYTRLCPHTTLYNQLVKLKKSCLR 1041
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69699.14619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTB8_ECTSI2.280e-1474.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8K1CA65_PYTOL2.100e-544.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69699contigH-elongata_contig69699:566..721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue4.9e-12
Seed eggNOG ortholog2880.D7FTB8
KEGG koko:K16600,ko:K16602
EggNOG free text desc.protein polyglycylation
EggNOG OGsKOG2157@1,KOG2157@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04812
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931094.6205494-CDS-H-elongata_contig69699:565..7211622931094.6205494-CDS-H-elongata_contig69699:565..721Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69699 566..721 +
1691679695.5852113-CDS-H-elongata_contig69699:565..7211691679695.5852113-CDS-H-elongata_contig69699:565..721Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69699 566..721 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69699.14619.1prot_H-elongata_contig69699.14619.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69699 566..721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69699.14619.1

>prot_H-elongata_contig69699.14619.1 ID=prot_H-elongata_contig69699.14619.1|Name=mRNA_H-elongata_contig69699.14619.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
EELERDLEEILCGRRPRVFGELPTRLGNFVRLCPATAAHRHALRLRRQVI
RS
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mRNA from alignment at H-elongata_contig69699:566..721+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69699.14619.1 ID=mRNA_H-elongata_contig69699.14619.1|Name=mRNA_H-elongata_contig69699.14619.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=156bp|location=Sequence derived from alignment at H-elongata_contig69699:566..721+ (Himanthalia elongata Himel1 dioecious)
GAGGAGCTAGAAAGAGACCTCGAAGAAATCCTCTGTGGTCGAAGGCCTCG
CGTGTTTGGGGAACTGCCAACACGATTGGGTAACTTTGTTAGGCTTTGTC
CCGCTACGGCGGCTCACCGCCACGCTTTACGCTTGAGGCGTCAAGTTATT
CGATCA
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Coding sequence (CDS) from alignment at H-elongata_contig69699:566..721+

>mRNA_H-elongata_contig69699.14619.1 ID=mRNA_H-elongata_contig69699.14619.1|Name=mRNA_H-elongata_contig69699.14619.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig69699:566..721+ (Himanthalia elongata Himel1 dioecious)
GAGGAGCTAGAAAGAGACCTCGAAGAAATCCTCTGTGGTCGAAGGCCTCG
CGTGTTTGGGGAACTGCCAACACGATTGGGTAACTTTGTTAGGCTTTGTC
CCGCTACGGCGGCTCACCGCCACGCTTTACGCTTGAGGCGTCAAGTTATT
CGATCAGAGGAGCTAGAAAGAGACCTCGAAGAAATCCTCTGTGGTCGAAG
GCCTCGCGTGTTTGGGGAACTGCCAACACGATTGGGTAACTTTGTTAGGC
TTTGTCCCGCTACGGCGGCTCACCGCCACGCTTTACGCTTGAGGCGTCAA
GTTATTCGATCA
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