mRNA_H-elongata_contig69682.14618.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69682.14618.1
Unique NamemRNA_H-elongata_contig69682.14618.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig69682.14618.1 vs. uniprot
Match: A0A6H5KM35_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM35_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 8.470e-35
Identity = 96/203 (47.29%), Postives = 113/203 (55.67%), Query Frame = 1 
Query:    1 KVAELKAELAGRSLDIKGNKADLAQRLQAALDEEEFGSLAMSVPATAAVTKTESATPALAHPEAMEMPAELSAVSRSYIISLVKPASHHRNSKIQILGEGESEAVSAPTDPIKSDAE--KIAKRVERFGRIAPMTETEMAQKMAKRRTKFGLPEQTSATNGTTVGSKRAPDPLEEEKRKKRMERFGIVDEKVSTAAKEQAEAS 603
            KV+ELKAELA RSLD+KGNKADLAQRLQAALDEEEFG+++M  P T     TE+     A P                                                     AE  ++AKRVERFGRIAP+TE E+A+KMA RR KFGLPE  +   G   G+KR+ +P EE KRKKRMERFGIVDEK   A + +AE S
Sbjct:   10 KVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTP-TVGDAATEAGNGTAAEPAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAMRLAKRVERFGRIAPVTEREVAEKMAMRREKFGLPEPAA---GGKQGTKRSLNPEEEAKRKKRMERFGIVDEKEEAAKRAEAEVS 208
[Close]
BLAST of mRNA_H-elongata_contig69682.14618.1 vs. uniprot
Match: D8LQC6_ECTSI (SAP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQC6_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 2.310e-34
Identity = 95/203 (46.80%), Postives = 117/203 (57.64%), Query Frame = 1 
Query:    1 KVAELKAELAGRSLDIKGNKADLAQRLQAALDEEEFGSLAMSVPATAAVTKTESATPALAHPEA---MEMPAELSAVSRSYIISLVKPASHHRNSKIQILGEGESEAVSAPTDPIKSDAEKIAKRVERFGRIAPMTETEMAQKMAKRRTKFGLPEQTSATNGTTVGSKRAPDPLEEEKRKKRMERFGIVDEKVSTAAKEQAEA 600
            KV+ELK ELA RSLD+KGNKADLAQRLQAALDEEEFG+++M  P T     TE+     A P A   +E                                               ++A ++AKRVERFGRIAP+TE+E+A+KMA RR KFGLPE  +   G   G+KR+ +P EE KRKKRMERFGIVD+K   A + +AEA
Sbjct:   10 KVSELKTELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTP-TVGDAATEAGNGTAAEPPAEPAVEATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAMRLAKRVERFGRIAPVTESEVAEKMAMRREKFGLPEPAA---GGKQGTKRSLNPEEEAKRKKRMERFGIVDDKEEAAKRTEAEA 208
[Close]
BLAST of mRNA_H-elongata_contig69682.14618.1 vs. uniprot
Match: T0RQ52_SAPDV (SAP domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0RQ52_SAPDV)

HSP 1 Score: 60.1 bits (144), Expect = 1.940e-7
Identity = 70/199 (35.18%), Postives = 90/199 (45.23%), Query Frame = 1 
Query:    1 KVAELKAELAGRSLDIKGNKADLAQRLQAALDEEEFGSLA--MSVPATAAVTKTESATPALAHPEAMEMPAELSAVSRSYII-SLVKPASHHRNSKIQILGEGESEAVSAPTDPIKSDAEKIAKRVERFGRIAPMTETEMAQKMAKRRTKFGLPEQTSATNGTTVGSKRAPDPLEEEKRKKRMERFGIV-DEKVSTAAK 585
            KVAE+K ELA R L   G KA+L QRL+ ALDEEEFGS A   +  A A  +   SATP      A E P E S    +  +  LVK A                   +AP     ++ EK   R  +FG   P+TE +   + A+R   F   +   A + T          +E  K+ KR ERFGI  D+KV    K
Sbjct:   10 KVAEIKDELAKRGLSTVGVKAELVQRLELALDEEEFGSEAHEQATLAAAEASPIGSATPEPVEEPAQEAPKEASPPKHAEPVPELVKDA---------------PVVAAAPVTVGMTEEEKRKARAAKFG--IPLTEDQRKMERAQR---FNALKAAGAVDAT----------VETVKKSKRAERFGIESDDKVQAQKK 178
[Close]
BLAST of mRNA_H-elongata_contig69682.14618.1 vs. uniprot
Match: A0A5D6XL70_9STRA (SAP domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XL70_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.140e-5
Identity = 63/202 (31.19%), Postives = 88/202 (43.56%), Query Frame = 1 
Query:    1 KVAELKAELAGRSLDIKGNKADLAQRLQAALDEEEFGSLAMSVPATAAVTKTESATPALAHPEAMEMPAELSAVSRSYIISLVKP-----ASHHRNSKIQILGEGESEAVSAPTDPIKSDA------------EKIAKRVERFGRIAPMTETEMAQKMAKRRTKFGLPEQTSATNGTTVGSKRAPDPLEEEKRKKRMERFGI 555
            KV+EL+A L  R L   G K++L QRL+ ALDEEEFGS A  + A A       A  AL H E+   P + +  +               A  H+++K     E ++ AV  P D    D             EK   R  ++G   P+ E +   + AKR   F +   T A    T G+  AP   E  K+ +R ERF +
Sbjct:    9 KVSELRAALESRGLSSNGLKSELIQRLELALDEEEFGSDAQDLEALAPPKDDAKAAAALPHAESTVSPTKQAKKAPEXXXXXXXXXXXXXAETHQSTKATAT-EPDAPAVVKPADKAPEDVTAGDAPKALTEEEKRKARAAKYG--IPLKEEDKKVERAKR---FNVSGGTGAA--ATAGAAAAPSEEERAKKLQRAERFNL 202
[Close]
BLAST of mRNA_H-elongata_contig69682.14618.1 vs. uniprot
Match: A0A835Z395_9STRA (SAP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z395_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 4.150e-5
Identity = 40/70 (57.14%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:    1 KVAELKAELAGRSLDIKGNKADLAQRLQAALDEEEFGSLAMSVPATAAVTKTESATPALAHPEAMEMPAE 210
            KVA+LKAELA R+LD  G K DL QRLQAALDEEEFG    +    AA T  ES++ A   P  +EMP E
Sbjct:   10 KVADLKAELAKRNLDSTGLKQDLIQRLQAALDEEEFGLAPDADLLGAAPTSFESSSFAADSPS-VEMPKE 78
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69682.14618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KM35_9PHAE8.470e-3547.29SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQC6_ECTSI2.310e-3446.80SAP domain-containing protein n=2 Tax=Ectocarpus T... [more]
T0RQ52_SAPDV1.940e-735.18SAP domain-containing protein n=2 Tax=Saprolegnia ... [more]
A0A5D6XL70_9STRA1.140e-531.19SAP domain-containing protein n=1 Tax=Pythium bras... [more]
A0A835Z395_9STRA4.150e-557.14SAP domain-containing protein n=1 Tax=Tribonema mi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69682contigH-elongata_contig69682:200..3240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue3.6e-08
Seed eggNOG ortholog112098.XP_008612059.1
KEGG koko:K18732
EggNOG free text desc.Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
EggNOG OGs2E2WQ@1,2SA2U@2759
Ec32 ortholog descriptionSAP domain
Ec32 orthologEc-10_005130.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019
Hectar predicted targeting categoryother localisation
Exons4
Model size663
Cds size663
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69682.14618.1prot_H-elongata_contig69682.14618.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69682 200..3240 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931094.5390234-CDS-H-elongata_contig69682:199..4901622931094.5390234-CDS-H-elongata_contig69682:199..490Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69682 200..490 +
1691679695.5413303-CDS-H-elongata_contig69682:199..4901691679695.5413303-CDS-H-elongata_contig69682:199..490Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69682 200..490 +
1622931094.5532067-CDS-H-elongata_contig69682:2096..22641622931094.5532067-CDS-H-elongata_contig69682:2096..2264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69682 2097..2264 +
1691679695.5534248-CDS-H-elongata_contig69682:2096..22641691679695.5534248-CDS-H-elongata_contig69682:2096..2264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69682 2097..2264 +
1622931094.5652273-CDS-H-elongata_contig69682:2705..28521622931094.5652273-CDS-H-elongata_contig69682:2705..2852Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69682 2706..2852 +
1691679695.5633504-CDS-H-elongata_contig69682:2705..28521691679695.5633504-CDS-H-elongata_contig69682:2705..2852Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69682 2706..2852 +
1622931094.5766425-CDS-H-elongata_contig69682:3183..32401622931094.5766425-CDS-H-elongata_contig69682:3183..3240Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69682 3184..3240 +
1691679695.5736046-CDS-H-elongata_contig69682:3183..32401691679695.5736046-CDS-H-elongata_contig69682:3183..3240Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69682 3184..3240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69682.14618.1

>prot_H-elongata_contig69682.14618.1 ID=prot_H-elongata_contig69682.14618.1|Name=mRNA_H-elongata_contig69682.14618.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=221bp
KVAELKAELAGRSLDIKGNKADLAQRLQAALDEEEFGSLAMSVPATAAVT
KTESATPALAHPEAMEMPAELSAVSRSYIISLVKPASHHRNSKIQILGEG
ESEAVSAPTDPIKSDAEKIAKRVERFGRIAPMTETEMAQKMAKRRTKFGL
PEQTSATNGTTVGSKRAPDPLEEEKRKKRMERFGIVDEKVSTAAKEQAEA
SRIAARRAKYGFVNPEAEKKA
back to top

mRNA from alignment at H-elongata_contig69682:200..3240+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69682.14618.1 ID=mRNA_H-elongata_contig69682.14618.1|Name=mRNA_H-elongata_contig69682.14618.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3041bp|location=Sequence derived from alignment at H-elongata_contig69682:200..3240+ (Himanthalia elongata Himel1 dioecious)
AAGGTGGCGGAGCTGAAAGCAGAGCTTGCTGGCAGAAGCCTAGACATAAA
GGGCAACAAGGCGGACCTCGCTCAGCGGCTGCAAGCAGCTCTCGATGAGG
AGGAGTTCGGTTCTTTGGCCATGTCCGTGCCGGCCACCGCTGCAGTCACC
AAGACTGAGAGTGCGACCCCCGCTCTAGCACACCCCGAGGCGATGGAAAT
GCCAGCGGAGTTATCTGCGGTGAGTCGATCATACATAATTTCTCTCGTAA
AACCCGCCAGCCATCATCGTAATTCGAAGATACAAATACTGGTGCAGAAT
ATCACCAACCAGAGCAGGGAGCATGTTCAATCATCACCCTACATCACCTC
CTTACACATTCTTGTAACGTCTTATTTTACCGTCGTTTGACACCTGTAAC
AAGGACACATGTCTAGTGGTACTCGAGTGATGGGTGGGAGGGCATAACAA
GCGATCGAGTCCGATGTAGGAGTTGAATCGTGAAGTCATATCGCAGAATC
GAGTCTCTTGTGTAAATCAAGATTATCGTACAGAGAGGCACACAACCCAC
CAGTAACCTAAGTATCTATATGTTGTTTTTGTCTTGATTTTTGTGCATTC
GAAAAATACCGCACAGTGCTCTACCGCTATTTCATGTGCGAGGTTACCGA
ATACCACTTACTGCAAATGTTGCCCATCCCGTCATAGCCTGTGGTCCTAA
GGGGTCACCCCATCTCTTCCCCGCTTGCATAACGCCTACGTTTTTTTATC
GCGAAGTATATTCAGCACTCGTAGCCCTCGTCAATCAATGGTTCAACGTT
TGCTTGCAAAACCAAATGAGAAGCATCCTAGAGCTCACGATTTTGACACT
TTTTGTGCTTTTATACTACTATTAGTTATTTACCTGGTTTCCCAATTATA
ATAATTATACCCCTACAACCTCAATCGAAATGCATGATCACTATCTACAT
ATGGATAATGCTACGCCCAACCTTTCCTAACCACCACACACAGTTCACTC
CCTATTCTCTGGTTTGGCGTCTCCATATTATGATGATGATGATGAATAAT
CACATATGACGAATTTTTATGCTTACATGTAGTTAAAATGTCCACATTCC
TGACGATAGTTGGTCCCCTGACCTACACCTCTCATGATGCTAAGAAGGTG
TGGATGTTCGGAGGGTTGGAATGAGTTCATATATTTTTTTATAATATTAA
TATTACTCGACCGGCAAGTTATTATGTTTTTTTCAATATATTATGAAAAA
ACATATGAACTCATTCCAACCCTCCGAACATCCACACCTTCTTAGCACCA
TGGGAGGTGAAGTCCACAGAGGACCAACTATCGCTAGGTTCAAATCTGGA
CATTTTATCTACATTAAAGCACAAAATCGTCATATGTGATTTAAGTCCAC
CGTTATATGAAAAACCTCCATCTCGTTCTCACCACCACCTCTTGTCTACT
CGTCGGAATATTACATCTGGAAGTAACGAAAACATCGCTTGATGCATCAC
TATGGCGCACCCTGCTCCGCCGTCGCTTGAAATCAGGAAAGGAATGGATC
TGCTCCACCTGACGCCCAGGAGGAGGCCACACGTGTAACGGTAAGCCTTT
CCTCTCCGTTGCTCAGGTCCCGCACGGTCAAAAATCGCTGTCTGTCTGGG
ACATGCAATCTATCCACCTTCCCTGAATGTTAAGCGCCAAAAGGAAAACT
TGCTGGCGTTTGCCGTATTTTCTTGTATTTTACCGTATCGCGGTCGGGGA
CGGCTTTGTTTTCGTCACGCCACGGCTGCGGTGGTGGGGGTGCCAGCGAT
GCGTCACGGCCCTGCACATAAAAAGGAAAAATGGACGAGAGTGATCTTTC
AATGCCTTTCAATTGCGTGGCGTACGCAGGAGGGAACCTTGGTCGAGGGT
GAGGGGGAAAGCGAAGCTGTTTCTGCGCCTACAGACCCAATCAAGTCCGA
CGCCGAGAAAATAGCTAAGCGGGTGGAGAGGTTCGGTCGCATCGCTCCGA
TGACTGAAACCGAGATGGCGCAAAAGATGGCCAAGCGCAGGACGAAGTTT
GGTCTGCCGGAGCAGGTAATTTCAATCAAATTACTGGAAACCGCGATCGG
GCAAGCCTCTTCGCGGCTTCCATGCAATGCTTTGGGTGTGTGCTACTTAC
CGAAGAGCGAAGTTAACCTGCTGCTGCATGGCCCCCGATTGTACCGCACT
GGCGTTGGTGAGCGGGGGATTTTTTTTTGCGTCTTTGCGCGGGTTCGCCC
AAAGTCTGGAGACTGCTTTTCATACTCTTATCGTCGGGATAGTCCTTCGA
AAGGTTTGACCTACACACCACTGGTCAACCTTACCGCCTTGATCCTTGTT
TGGCGAGGGACACCGCGCCGGGGGTTTGCCAGCCTCGAGAATGTGTTCTT
TCCTTCGTGTATACTTTATTATTGATACTATTGTTGGGCGCGCTCGACAC
CTCGCCGGTTGGGTACTCTATCGTGCACGCGCGCTTGCGACTCGTGTGCG
CTTCAGACTAGCGCCACTAACGGTACGACGGTAGGCTCGAAAAGGGCACC
GGACCCGCTAGAGGAAGAAAAAAGAAAGAAGCGCATGGAGAGGTTTGGCA
TCGTGGACGAGAAGGTGTCGACCGCGGCGAAGGAACAAGCGGAGGCGAGT
CGCGTACCGTTTTTTGTGTTTATATCGTGGTTTGAGTTGTGTTGGGGCTA
GAGAGAGCGACCTAAAAAAGTGTCGATGTTCGGATCGATTTCGCCCCGAA
GGTGGCCAGTCCATCTGCCACTCGCCTGTAGCGCGTGCATATGTGTCCCG
GTTGTAGCGCGTGAAGACCATGTGGACCAGCGTAGACCGTCGTTATCTCG
TGTTTACAGACTGTGCGAACCGCGTCCACAGCACAGTTCGCTGCTCCTGG
TGTGATGACTGCGTACATAAGTCTATGAATGATCGTGTCTCTGCCTTTGC
CGTGTCCTCTCGAACGGCTAATCAGGCGGCGAAGATTGCTGCTCGTCGGG
CAAAGTACGGTTTCGTGAACCCTGAGGCAGAGAAGAAGGCA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig69682:200..3240+

>mRNA_H-elongata_contig69682.14618.1 ID=mRNA_H-elongata_contig69682.14618.1|Name=mRNA_H-elongata_contig69682.14618.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1326bp|location=Sequence derived from alignment at H-elongata_contig69682:200..3240+ (Himanthalia elongata Himel1 dioecious)
AAGGTGGCGGAGCTGAAAGCAGAGCTTGCTGGCAGAAGCCTAGACATAAA
GGGCAACAAGGCGGACCTCGCTCAGCGGCTGCAAGCAGCTCTCGATGAGG
AGGAGTTCGGTTCTTTGGCCATGTCCGTGCCGGCCACCGCTGCAGTCACC
AAGACTGAGAGTGCGACCCCCGCTCTAGCACACCCCGAGGCGATGGAAAT
GCCAGCGGAGTTATCTGCGGTGAGTCGATCATACATAATTTCTCTCGTAA
AACCCGCCAGCCATCATCGTAATTCGAAGATACAAATACTGAAGGTGGCG
GAGCTGAAAGCAGAGCTTGCTGGCAGAAGCCTAGACATAAAGGGCAACAA
GGCGGACCTCGCTCAGCGGCTGCAAGCAGCTCTCGATGAGGAGGAGTTCG
GTTCTTTGGCCATGTCCGTGCCGGCCACCGCTGCAGTCACCAAGACTGAG
AGTGCGACCCCCGCTCTAGCACACCCCGAGGCGATGGAAATGCCAGCGGA
GTTATCTGCGGTGAGTCGATCATACATAATTTCTCTCGTAAAACCCGCCA
GCCATCATCGTAATTCGAAGATACAAATACTGGGTGAGGGGGAAAGCGAA
GCTGTTTCTGCGCCTACAGACCCAATCAAGTCCGACGCCGAGAAAATAGC
TAAGCGGGTGGAGAGGTTCGGTCGCATCGCTCCGATGACTGAAACCGAGA
TGGCGCAAAAGATGGCCAAGCGCAGGACGAAGTTTGGTCTGCCGGAGCAG
GGTGAGGGGGAAAGCGAAGCTGTTTCTGCGCCTACAGACCCAATCAAGTC
CGACGCCGAGAAAATAGCTAAGCGGGTGGAGAGGTTCGGTCGCATCGCTC
CGATGACTGAAACCGAGATGGCGCAAAAGATGGCCAAGCGCAGGACGAAG
TTTGGTCTGCCGGAGCAGACTAGCGCCACTAACGGTACGACGGTAGGCTC
GAAAAGGGCACCGGACCCGCTAGAGGAAGAAAAAAGAAAGAAGCGCATGG
AGAGGTTTGGCATCGTGGACGAGAAGGTGTCGACCGCGGCGAAGGAACAA
GCGGAGGCGAGTCGCACTAGCGCCACTAACGGTACGACGGTAGGCTCGAA
AAGGGCACCGGACCCGCTAGAGGAAGAAAAAAGAAAGAAGCGCATGGAGA
GGTTTGGCATCGTGGACGAGAAGGTGTCGACCGCGGCGAAGGAACAAGCG
GAGGCGAGTCGCATTGCTGCTCGTCGGGCAAAGTACGGTTTCGTGAACCC
TGAGGCAGAGAAGAAGGCAATTGCTGCTCGTCGGGCAAAGTACGGTTTCG
TGAACCCTGAGGCAGAGAAGAAGGCA
back to top