mRNA_H-elongata_contig6967.14617.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6967.14617.1
Unique NamemRNA_H-elongata_contig6967.14617.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6967.14617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6967contigH-elongata_contig6967:7389..8381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionStreptomyces cyclase/dehydrase
Ec32 orthologEc-08_001670.1
Exons2
Model size825
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6967.14617.1prot_H-elongata_contig6967.14617.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6967 7776..8357 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931094.4355412-UTR-H-elongata_contig6967:7388..77751622931094.4355412-UTR-H-elongata_contig6967:7388..7775Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6967 7389..7775 -
1691679695.498851-UTR-H-elongata_contig6967:7388..77751691679695.498851-UTR-H-elongata_contig6967:7388..7775Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6967 7389..7775 -
1622931094.493551-UTR-H-elongata_contig6967:8357..83811622931094.493551-UTR-H-elongata_contig6967:8357..8381Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6967 8358..8381 -
1691679695.531279-UTR-H-elongata_contig6967:8357..83811691679695.531279-UTR-H-elongata_contig6967:8357..8381Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6967 8358..8381 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931094.460751-CDS-H-elongata_contig6967:7775..80251622931094.460751-CDS-H-elongata_contig6967:7775..8025Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6967 7776..8025 -
1691679695.5127428-CDS-H-elongata_contig6967:7775..80251691679695.5127428-CDS-H-elongata_contig6967:7775..8025Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6967 7776..8025 -
1622931094.4779234-CDS-H-elongata_contig6967:8193..83571622931094.4779234-CDS-H-elongata_contig6967:8193..8357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6967 8194..8357 -
1691679695.5222318-CDS-H-elongata_contig6967:8193..83571691679695.5222318-CDS-H-elongata_contig6967:8193..8357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6967 8194..8357 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6967.14617.1

>prot_H-elongata_contig6967.14617.1 ID=prot_H-elongata_contig6967.14617.1|Name=mRNA_H-elongata_contig6967.14617.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=138bp
MVVCTEELAQKGCVGGRELLRTQPLSGTQGFHACFPASRAPAWSTKAVKT
RSAYFDLERFKDVLSRQPEVIAATTESKRGASYDLPPATGAPQATGKSEG
GENGCASTPRTSSIRHLGKAAPGDDDEENSAAEFSAK*
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mRNA from alignment at H-elongata_contig6967:7389..8381-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6967.14617.1 ID=mRNA_H-elongata_contig6967.14617.1|Name=mRNA_H-elongata_contig6967.14617.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=993bp|location=Sequence derived from alignment at H-elongata_contig6967:7389..8381- (Himanthalia elongata Himel1 dioecious)
GTTCCCCGCCCCGTCCGATTTACCATGGTTGTTTGTACTGAGGAGCTTGC
TCAGAAGGGGTGTGTGGGGGGACGGGAGCTACTGCGCACACAGCCATTAT
CCGGAACTCAGGGTTTTCATGCGTGTTTCCCGGCATCGAGAGCACCTGCA
TGGTCCACCAAGGCCGTGAAGACTCGCTCAGCATACTTGTTAAGTATAAT
CCATTCCAAAACTTCACTTCGGAAACACGCCTCGGAATTCTGCTCTCATA
AAAAATATTTTGGCGTGGTAAACAGAGAATCCTTGTCGCGATTAAGGTGG
CCCACACCTCGCTCAATCTCCCTGATTCCCTCCCTCGCGGAATTTACTAC
CGACAGCGACCTCGAGCGCTTCAAAGACGTGCTCTCGCGGCAGCCGGAGG
TCATCGCCGCCACAACAGAATCGAAAAGAGGCGCAAGCTACGACCTACCC
CCCGCGACGGGTGCGCCTCAGGCCACAGGCAAGAGCGAGGGCGGCGAAAA
CGGCTGCGCTAGCACGCCTCGAACATCGTCCATCCGACATTTAGGTAAAG
CGGCGCCTGGTGATGACGACGAAGAAAACTCCGCAGCGGAATTTTCGGCA
AAATAATAGCAGGCACGCAGCATACGAATCCAGAGGGGTCCAACTCTGAG
GGAGAAAATAACGAGAAATTCGAGGACTTTTGAACTCTTAAATATGAAAA
CCCGCGGAGACGGCCGCCACTCTGGAGATGCATGACCACAGCGTCGATCT
CATGGGAGTCGGGTCGTTGTAAAGAGGGATAGAGAGGAGGGATGCTTCCA
CCGTTAGCGAGGACTGTGGTGATGTTGGTATGTTATCTATAGGGCAGGGG
AAGATGTTTCGACACGAGGGCAAGGATGTGGAATAAGGGTCGTGTCTGCT
CGGCTTGGATGCCGTTTAGATTCAACGCTTTCATGTGCGTCGGGGGATAG
ATAACGTTGATACGGTCGTGCCGTAGTCGAGTTTTAGTTGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig6967:7389..8381-

>mRNA_H-elongata_contig6967.14617.1 ID=mRNA_H-elongata_contig6967.14617.1|Name=mRNA_H-elongata_contig6967.14617.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at H-elongata_contig6967:7389..8381- (Himanthalia elongata Himel1 dioecious)
ATGGTTGTTTGTACTGAGGAGCTTGCTCAGAAGGGGTGTGTGGGGGGACG
GGAGCTACTGCGCACACAGCCATTATCCGGAACTCAGGGTTTTCATGCGT
GTTTCCCGGCATCGAGAGCACCTGCATGGTCCACCAAGGCCGTGAAGACT
CGCTCAGCATACTTATGGTTGTTTGTACTGAGGAGCTTGCTCAGAAGGGG
TGTGTGGGGGGACGGGAGCTACTGCGCACACAGCCATTATCCGGAACTCA
GGGTTTTCATGCGTGTTTCCCGGCATCGAGAGCACCTGCATGGTCCACCA
AGGCCGTGAAGACTCGCTCAGCATACTTCGACCTCGAGCGCTTCAAAGAC
GTGCTCTCGCGGCAGCCGGAGGTCATCGCCGCCACAACAGAATCGAAAAG
AGGCGCAAGCTACGACCTACCCCCCGCGACGGGTGCGCCTCAGGCCACAG
GCAAGAGCGAGGGCGGCGAAAACGGCTGCGCTAGCACGCCTCGAACATCG
TCCATCCGACATTTAGGTAAAGCGGCGCCTGGTGATGACGACGAAGAAAA
CTCCGCAGCGGAATTTTCGGCAAAATAACGACCTCGAGCGCTTCAAAGAC
GTGCTCTCGCGGCAGCCGGAGGTCATCGCCGCCACAACAGAATCGAAAAG
AGGCGCAAGCTACGACCTACCCCCCGCGACGGGTGCGCCTCAGGCCACAG
GCAAGAGCGAGGGCGGCGAAAACGGCTGCGCTAGCACGCCTCGAACATCG
TCCATCCGACATTTAGGTAAAGCGGCGCCTGGTGATGACGACGAAGAAAA
CTCCGCAGCGGAATTTTCGGCAAAATAA
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