mRNA_H-elongata_contig6966.14615.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6966.14615.1
Unique NamemRNA_H-elongata_contig6966.14615.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig6966.14615.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 1.590e-40
Identity = 69/107 (64.49%), Postives = 87/107 (81.31%), Query Frame = 1 
Query:    1 LLDEQGKQRYQSITGVLMYLAQVSRYDILYAVNQLARAMSKPSKSYMGAAKHVLWYLAGSANFSITNRRGGFKLTTYTDANWVGNPDNGKSTSSYIMILANGPISFK 321
            LLDE+  ++YQ I G LMY+AQV RYDI+YA  QLAR M+KPSK +M AAKH L YLAG+ +FSIT ++GGFKL T++D+NW  NPDNGKSTSSY+ +LAN P+SF+
Sbjct:  209 LLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFR 315
[Close]
BLAST of mRNA_H-elongata_contig6966.14615.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 9.550e-40
Identity = 69/107 (64.49%), Postives = 88/107 (82.24%), Query Frame = 1 
Query:    1 LLDEQGKQRYQSITGVLMYLAQVSRYDILYAVNQLARAMSKPSKSYMGAAKHVLWYLAGSANFSITNRRGGFKLTTYTDANWVGNPDNGKSTSSYIMILANGPISFK 321
            LLDE+  ++YQ I G LMY+AQV RYDI+YA  QLAR+M+KPSK +M AAKH L YLAG+ +FSIT ++GGFKL T++D+NW  NPDNGKSTSSY+ +LAN P+SF+
Sbjct:  430 LLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFR 536
[Close]
BLAST of mRNA_H-elongata_contig6966.14615.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.950e-39
Identity = 69/107 (64.49%), Postives = 87/107 (81.31%), Query Frame = 1 
Query:    1 LLDEQGKQRYQSITGVLMYLAQVSRYDILYAVNQLARAMSKPSKSYMGAAKHVLWYLAGSANFSITNRRGGFKLTTYTDANWVGNPDNGKSTSSYIMILANGPISFK 321
            LLDE+  ++YQ I G LMY+AQV RYDI+YA  QLAR M+KPSK +M AAKH L YLAG+ +FSIT ++GGFKL T++D+NW  NPDNGKSTSSY+ +LAN P+SF+
Sbjct: 1438 LLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFR 1544
[Close]
BLAST of mRNA_H-elongata_contig6966.14615.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 3.560e-39
Identity = 69/107 (64.49%), Postives = 87/107 (81.31%), Query Frame = 1 
Query:    1 LLDEQGKQRYQSITGVLMYLAQVSRYDILYAVNQLARAMSKPSKSYMGAAKHVLWYLAGSANFSITNRRGGFKLTTYTDANWVGNPDNGKSTSSYIMILANGPISFK 321
            LLDE+  ++YQ I G LMY+AQV RYDI+YA  QLAR M+KPSK +M AAKH L YLAG+ +FSIT ++GGFKL T++D+NW  NPDNGKSTSSY+ +LAN P+SF+
Sbjct:  769 LLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFR 875
[Close]
BLAST of mRNA_H-elongata_contig6966.14615.1 vs. uniprot
Match: A0A6H5KNV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV2_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 4.840e-37
Identity = 63/95 (66.32%), Postives = 78/95 (82.11%), Query Frame = 1 
Query:   37 ITGVLMYLAQVSRYDILYAVNQLARAMSKPSKSYMGAAKHVLWYLAGSANFSITNRRGGFKLTTYTDANWVGNPDNGKSTSSYIMILANGPISFK 321
            I G LMY+AQV RYDI+YA  QLAR M+KPSK +M AAKH L YLAG+ +FSIT ++GGFKL T++D+NW  NPDNGKSTSSY+ +LAN P+SF+
Sbjct:   98 IVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFR 192
[Close]
BLAST of mRNA_H-elongata_contig6966.14615.1 vs. uniprot
Match: A0A6H5KPN4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN4_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.600e-36
Identity = 65/107 (60.75%), Postives = 79/107 (73.83%), Query Frame = 1 
Query:    1 LLDEQGKQRYQSITGVLMYLAQVSRYDILYAVNQLARAMSKPSKSYMGAAKHVLWYLAGSANFSITNRRGGFKLTTYTDANWVGNPDNGKSTSSYIMILANGPISFK 321
            LL E+  +RYQ I G LMY+AQV RYDI+YA  QLAR M KPSK +M AAKH L Y+AG+ NF IT +  GFKL T++D+NW  NPDNGKSTS Y+ +L N P+S K
Sbjct:  300 LLGEEETRRYQGIVGCLMYIAQVLRYDIMYATGQLARPMEKPSKIHMVAAKHTLRYVAGTTNFRITYKSEGFKLATFSDSNWANNPDNGKSTSCYLTMLGNTPVSLK 406
[Close]
BLAST of mRNA_H-elongata_contig6966.14615.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 3.460e-35
Identity = 62/107 (57.94%), Postives = 84/107 (78.50%), Query Frame = 1 
Query:    1 LLDEQGKQRYQSITGVLMYLAQVSRYDILYAVNQLARAMSKPSKSYMGAAKHVLWYLAGSANFSITNRRGGFKLTTYTDANWVGNPDNGKSTSSYIMILANGPISFK 321
            LL+++  +RYQ I G L+YL+Q+ RYDI+YA +QLAR M+KPSK++MGAAK    YLAG+  F I  +RGGFKLT +TD+NW  NPDNGKSTSS++ +L + P++FK
Sbjct:  492 LLNQEETRRYQGIVGCLIYLSQILRYDIMYATSQLARPMAKPSKNHMGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFK 598
[Close]
BLAST of mRNA_H-elongata_contig6966.14615.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 4.970e-35
Identity = 67/107 (62.62%), Postives = 84/107 (78.50%), Query Frame = 1 
Query:    1 LLDEQGKQRYQSITGVLMYLAQVSRYDILYAVNQLARAMSKPSKSYMGAAKHVLWYLAGSANFSITNRRGGFKLTTYTDANWVGNPDNGKSTSSYIMILANGPISFK 321
            LL+ +GKQRYQ+I G +MYLAQV+RYDI+Y  +Q ARAMS PSK +MGAAKH+L YL+GS +FSIT +RGGF LT  ++AN   N DNGKS SSYIM+++  P S K
Sbjct:  550 LLNAEGKQRYQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLK 656
[Close]
BLAST of mRNA_H-elongata_contig6966.14615.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 4.180e-33
Identity = 61/96 (63.54%), Postives = 78/96 (81.25%), Query Frame = 1 
Query:   34 SITGVLMYLAQVSRYDILYAVNQLARAMSKPSKSYMGAAKHVLWYLAGSANFSITNRRGGFKLTTYTDANWVGNPDNGKSTSSYIMILANGPISFK 321
            +I G ++YLAQ++RYDI+Y  +QLARAMS PSK +MGAAKH+L YL+GS +FSIT +RGGF LT  +DANW  NPDN KS SSYIM+++  P+SFK
Sbjct:  474 AIIGSVIYLAQITRYDIMYCASQLARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFK 569
[Close]
BLAST of mRNA_H-elongata_contig6966.14615.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 2.550e-32
Identity = 56/90 (62.22%), Postives = 71/90 (78.89%), Query Frame = 1 
Query:   52 MYLAQVSRYDILYAVNQLARAMSKPSKSYMGAAKHVLWYLAGSANFSITNRRGGFKLTTYTDANWVGNPDNGKSTSSYIMILANGPISFK 321
            MY+AQV RYDI+YA   LAR M+KPSK +   AK  L YLAG+ +FSIT ++GGFKL T++D+NW  NPDNGKSTSSY+ +LAN P+SF+
Sbjct:    1 MYIAQVLRYDIMYATGHLARPMAKPSKVHTVTAKQTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFR 90
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6966.14615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5U2_9PHAE1.590e-4064.49Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JME8_9PHAE9.550e-4064.49Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE1.950e-3964.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNH5_9PHAE3.560e-3964.49Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KNV2_9PHAE4.840e-3766.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPN4_9PHAE1.600e-3660.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JG39_9PHAE3.460e-3557.94Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L6R7_9PHAE4.970e-3562.62Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBU1_9PHAE4.180e-3363.54CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KMK0_9PHAE2.550e-3262.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6966contigH-elongata_contig6966:830..1150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score94.0
Seed ortholog evalue4.6e-17
Seed eggNOG ortholog1005962.W1QCY3
EggNOG free text desc.retrotransposon
EggNOG OGs38DPC@33154,3NUZ7@4751,3QNZW@4890,3RTT4@4891,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelSaccharomycetes
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931094.2154179-CDS-H-elongata_contig6966:829..11501622931094.2154179-CDS-H-elongata_contig6966:829..1150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6966 830..1150 -
1691679695.402825-CDS-H-elongata_contig6966:829..11501691679695.402825-CDS-H-elongata_contig6966:829..1150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6966 830..1150 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6966.14615.1prot_H-elongata_contig6966.14615.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6966 830..1150 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6966.14615.1

>prot_H-elongata_contig6966.14615.1 ID=prot_H-elongata_contig6966.14615.1|Name=mRNA_H-elongata_contig6966.14615.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
LLDEQGKQRYQSITGVLMYLAQVSRYDILYAVNQLARAMSKPSKSYMGAA
KHVLWYLAGSANFSITNRRGGFKLTTYTDANWVGNPDNGKSTSSYIMILA
NGPISFK
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mRNA from alignment at H-elongata_contig6966:830..1150-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6966.14615.1 ID=mRNA_H-elongata_contig6966.14615.1|Name=mRNA_H-elongata_contig6966.14615.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=321bp|location=Sequence derived from alignment at H-elongata_contig6966:830..1150- (Himanthalia elongata Himel1 dioecious)
CTGTTGGACGAACAAGGAAAACAGCGATACCAGTCCATCACCGGTGTGCT
AATGTACCTCGCGCAGGTCTCACGATATGACATCCTCTACGCGGTTAATC
AGCTGGCGAGGGCAATGTCGAAGCCCTCGAAATCTTACATGGGGGCGGCA
AAACACGTACTCTGGTACTTGGCTGGGTCTGCCAATTTCTCCATCACTAA
CAGGCGAGGTGGCTTTAAACTAACGACTTATACTGACGCGAACTGGGTAG
GGAATCCCGATAACGGTAAGTCTACCTCCTCGTACATCATGATACTTGCC
AACGGACCGATCAGTTTCAAA
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Coding sequence (CDS) from alignment at H-elongata_contig6966:830..1150-

>mRNA_H-elongata_contig6966.14615.1 ID=mRNA_H-elongata_contig6966.14615.1|Name=mRNA_H-elongata_contig6966.14615.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig6966:830..1150- (Himanthalia elongata Himel1 dioecious)
CTGTTGGACGAACAAGGAAAACAGCGATACCAGTCCATCACCGGTGTGCT
AATGTACCTCGCGCAGGTCTCACGATATGACATCCTCTACGCGGTTAATC
AGCTGGCGAGGGCAATGTCGAAGCCCTCGAAATCTTACATGGGGGCGGCA
AAACACGTACTCTGGTACTTGGCTGGGTCTGCCAATTTCTCCATCACTAA
CAGGCGAGGTGGCTTTAAACTAACGACTTATACTGACGCGAACTGGGTAG
GGAATCCCGATAACGGTAAGTCTACCTCCTCGTACATCATGATACTTGCC
AACGGACCGATCAGTTTCAAACTGTTGGACGAACAAGGAAAACAGCGATA
CCAGTCCATCACCGGTGTGCTAATGTACCTCGCGCAGGTCTCACGATATG
ACATCCTCTACGCGGTTAATCAGCTGGCGAGGGCAATGTCGAAGCCCTCG
AAATCTTACATGGGGGCGGCAAAACACGTACTCTGGTACTTGGCTGGGTC
TGCCAATTTCTCCATCACTAACAGGCGAGGTGGCTTTAAACTAACGACTT
ATACTGACGCGAACTGGGTAGGGAATCCCGATAACGGTAAGTCTACCTCC
TCGTACATCATGATACTTGCCAACGGACCGATCAGTTTCAAA
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