mRNA_H-elongata_contig69627.14610.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69627.14610.1
Unique NamemRNA_H-elongata_contig69627.14610.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig69627.14610.1 vs. uniprot
Match: D7G4L2_ECTSI (MsrB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4L2_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 1.990e-31
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:   19 DEVWKNKLRPDQYYVLRMGGTEPAFTSPLNGEKRDGVFVCAGCDQDLFPSSTKYNSGTGW 198
            DE WKNKL PDQYYVLRMGGTEP+FTSPLN EKR+GVFVCAGC Q+L+ SSTKYNSGTGW
Sbjct:  235 DETWKNKLSPDQYYVLRMGGTEPSFTSPLNKEKREGVFVCAGCGQELYDSSTKYNSGTGW 294
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BLAST of mRNA_H-elongata_contig69627.14610.1 vs. uniprot
Match: A0A6H5KIF4_9PHAE (MsrB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIF4_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 8.480e-31
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:   19 DEVWKNKLRPDQYYVLRMGGTEPAFTSPLNGEKRDGVFVCAGCDQDLFPSSTKYNSGTGW 198
            DE WKNKL PDQYYVLRMGGTEP+FTSPLN EKR+GVFVCAGC Q+L+ SSTKYNSGTGW
Sbjct:  346 DETWKNKLSPDQYYVLRMGGTEPSFTSPLNKEKREGVFVCAGCGQELYDSSTKYNSGTGW 405
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BLAST of mRNA_H-elongata_contig69627.14610.1 vs. uniprot
Match: E0MPG8_9HYPH (Peptide methionine sulfoxide reductase MsrB n=1 Tax=Ahrensia sp. R2A130 TaxID=744979 RepID=E0MPG8_9HYPH)

HSP 1 Score: 97.8 bits (242), Expect = 1.100e-24
Identity = 39/62 (62.90%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:   13 KADEVWKNKLRPDQYYVLRMGGTEPAFTSPLNGEKRDGVFVCAGCDQDLFPSSTKYNSGTGW 198
            K D  W+ +L P+Q+YVLR  GTE AFTSPLN EKRDG+F+CAGC++ LF + TK++SGTGW
Sbjct:    6 KTDSQWREELTPEQFYVLREEGTERAFTSPLNDEKRDGLFICAGCEKPLFKAETKFDSGTGW 67
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BLAST of mRNA_H-elongata_contig69627.14610.1 vs. uniprot
Match: G2KME1_MICAA (Peptide-methionine (R)-S-oxide reductase n=3 Tax=Micavibrio aeruginosavorus TaxID=349221 RepID=G2KME1_MICAA)

HSP 1 Score: 97.8 bits (242), Expect = 1.840e-24
Identity = 44/63 (69.84%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:   10 TKADEVWKNKLRPDQYYVLRMGGTEPAFTSPLNGEKRDGVFVCAGCDQDLFPSSTKYNSGTGW 198
            T +D  WK +L P+ Y+VLR  GTE AFTSPLN EKR GVF CAGCDQ LF SS KYNSGTGW
Sbjct:   26 TLSDAEWKKRLSPEAYHVLRDHGTERAFTSPLNDEKRAGVFHCAGCDQALFKSSDKYNSGTGW 88
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BLAST of mRNA_H-elongata_contig69627.14610.1 vs. uniprot
Match: UPI001ADC3651 (peptide-methionine (R)-S-oxide reductase MsrB n=1 Tax=Prochlorococcus marinus TaxID=1219 RepID=UPI001ADC3651)

HSP 1 Score: 97.8 bits (242), Expect = 2.520e-24
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:   22 EVWKNKLRPDQYYVLRMGGTEPAFTSPLNGEKRDGVFVCAGCDQDLFPSSTKYNSGTGW 198
            E WK++L PD YY+LR  GTE AF+SPLN EKR+GVF CAGCD  LFPS  KY+SGTGW
Sbjct:   44 EEWKSRLSPDSYYILREEGTERAFSSPLNNEKREGVFHCAGCDLALFPSDKKYDSGTGW 102
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BLAST of mRNA_H-elongata_contig69627.14610.1 vs. uniprot
Match: A0A0D6AKR8_9CHRO (Peptide-methionine (R)-S-oxide reductase n=2 Tax=Geminocystis sp. NIES-3709 TaxID=1617448 RepID=A0A0D6AKR8_9CHRO)

HSP 1 Score: 97.1 bits (240), Expect = 5.190e-24
Identity = 40/63 (63.49%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:   10 TKADEVWKNKLRPDQYYVLRMGGTEPAFTSPLNGEKRDGVFVCAGCDQDLFPSSTKYNSGTGW 198
            T +D+ WK KL P QY++LR  GTE  F+SPLN EKR G++ CAGC+  LF SSTKYNSGTGW
Sbjct:   40 TLSDKEWKKKLTPQQYHILRQEGTEKPFSSPLNNEKRKGIYACAGCNLPLFNSSTKYNSGTGW 102
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BLAST of mRNA_H-elongata_contig69627.14610.1 vs. uniprot
Match: A0A7Y4TI91_9BACT (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7Y4TI91_9BACT)

HSP 1 Score: 96.7 bits (239), Expect = 7.530e-24
Identity = 41/62 (66.13%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:   13 KADEVWKNKLRPDQYYVLRMGGTEPAFTSPLNGEKRDGVFVCAGCDQDLFPSSTKYNSGTGW 198
            K++  W+ +L P+Q+ VLR  GTE AFTSPL+GE RDGVFVCAGC Q+LF S TKY+SGTGW
Sbjct:   42 KSEAQWRAELTPEQFQVLREHGTERAFTSPLDGEARDGVFVCAGCGQELFSSETKYDSGTGW 103
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BLAST of mRNA_H-elongata_contig69627.14610.1 vs. uniprot
Match: A0A512DPX5_9PROT (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Skermanella aerolata TaxID=393310 RepID=A0A512DPX5_9PROT)

HSP 1 Score: 95.9 bits (237), Expect = 1.170e-23
Identity = 41/63 (65.08%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:   10 TKADEVWKNKLRPDQYYVLRMGGTEPAFTSPLNGEKRDGVFVCAGCDQDLFPSSTKYNSGTGW 198
            +K    W+ +L P+QYYVLR  GTE A TSPLN EKR G FVCAGC+QDLF S TK+ SGTGW
Sbjct:   30 SKPAAEWREQLTPEQYYVLREHGTERACTSPLNAEKRSGTFVCAGCEQDLFASDTKFESGTGW 92
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BLAST of mRNA_H-elongata_contig69627.14610.1 vs. uniprot
Match: F8GVU7_CUPNN (Peptide-methionine (R)-S-oxide reductase n=4 Tax=Cupriavidus TaxID=106589 RepID=F8GVU7_CUPNN)

HSP 1 Score: 95.9 bits (237), Expect = 1.760e-23
Identity = 40/63 (63.49%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:   10 TKADEVWKNKLRPDQYYVLRMGGTEPAFTSPLNGEKRDGVFVCAGCDQDLFPSSTKYNSGTGW 198
            T +DE W+ KL P QY VLR  GTE  F+SPLNGE R+G+F CAGC+ DLF S TK++SGTGW
Sbjct:   47 TMSDEAWRRKLSPAQYAVLRNEGTERPFSSPLNGEHRNGIFACAGCELDLFSSKTKFDSGTGW 109
[Close]
BLAST of mRNA_H-elongata_contig69627.14610.1 vs. uniprot
Match: A0A380W833_AFIFE (Peptide-methionine (R)-S-oxide reductase n=4 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A380W833_AFIFE)

HSP 1 Score: 95.5 bits (236), Expect = 2.090e-23
Identity = 40/62 (64.52%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:   13 KADEVWKNKLRPDQYYVLRMGGTEPAFTSPLNGEKRDGVFVCAGCDQDLFPSSTKYNSGTGW 198
            K  E WK +L P QY++LR  GTEPAF+SPLN E R G F CAGCDQ LF S TK++SGTGW
Sbjct:   37 KTPEEWKRQLTPAQYHILREEGTEPAFSSPLNNEHRKGTFACAGCDQALFASETKFDSGTGW 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69627.14610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4L2_ECTSI1.990e-3185.00MsrB domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KIF4_9PHAE8.480e-3185.00MsrB domain-containing protein n=1 Tax=Ectocarpus ... [more]
E0MPG8_9HYPH1.100e-2462.90Peptide methionine sulfoxide reductase MsrB n=1 Ta... [more]
G2KME1_MICAA1.840e-2469.84Peptide-methionine (R)-S-oxide reductase n=3 Tax=M... [more]
UPI001ADC36512.520e-2469.49peptide-methionine (R)-S-oxide reductase MsrB n=1 ... [more]
A0A0D6AKR8_9CHRO5.190e-2463.49Peptide-methionine (R)-S-oxide reductase n=2 Tax=G... [more]
A0A7Y4TI91_9BACT7.530e-2466.13Peptide-methionine (R)-S-oxide reductase n=1 Tax=A... [more]
A0A512DPX5_9PROT1.170e-2365.08Peptide-methionine (R)-S-oxide reductase n=1 Tax=S... [more]
F8GVU7_CUPNN1.760e-2363.49Peptide-methionine (R)-S-oxide reductase n=4 Tax=C... [more]
A0A380W833_AFIFE2.090e-2364.52Peptide-methionine (R)-S-oxide reductase n=4 Tax=B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69627contigH-elongata_contig69627:2587..3174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.6
Seed ortholog evalue2.9e-25
Seed eggNOG ortholog2880.D7G4L2
KEGG koko:K07305
GOsGO:0000229,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005739,GO:0006807,GO:0006950,GO:0006979,GO:0007623,GO:0008150,GO:0008152,GO:0009295,GO:0009507,GO:0009508,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009636,GO:0009941,GO:0009987,GO:0016020,GO:0016491,GO:0016667,GO:0016671,GO:0019538,GO:0030091,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0033554,GO:0033743,GO:0034357,GO:0034599,GO:0042221,GO:0042644,GO:0042646,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048511,GO:0050896,GO:0051716,GO:0055035,GO:0055114,GO:0070887,GO:0071704,GO:0097237,GO:0098552,GO:0098572,GO:0098754,GO:1901564,GO:1990748
EggNOG free text desc.peptide-methionine (R)-S-oxide reductase activity
EggNOG OGsCOG0229@1,COG0702@1,KOG0856@2759,KOG1203@2759
EC1.8.4.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMss4-like
Ec32 orthologEc-07_000180.1
Exons2
Model size201
Cds size201
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931093.8009782-CDS-H-elongata_contig69627:2586..27151622931093.8009782-CDS-H-elongata_contig69627:2586..2715Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69627 2587..2715 -
1691679695.213091-CDS-H-elongata_contig69627:2586..27151691679695.213091-CDS-H-elongata_contig69627:2586..2715Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69627 2587..2715 -
1622931093.8165786-CDS-H-elongata_contig69627:3102..31741622931093.8165786-CDS-H-elongata_contig69627:3102..3174Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69627 3103..3174 -
1691679695.224706-CDS-H-elongata_contig69627:3102..31741691679695.224706-CDS-H-elongata_contig69627:3102..3174Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69627 3103..3174 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69627.14610.1prot_H-elongata_contig69627.14610.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69627 2587..3174 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69627.14610.1

>prot_H-elongata_contig69627.14610.1 ID=prot_H-elongata_contig69627.14610.1|Name=mRNA_H-elongata_contig69627.14610.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MCCTKADEVWKNKLRPDQYYVLRMGGTEPAFTSPLNGEKRDGVFVCAGCD
QDLFPSSTKYNSGTGW*
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mRNA from alignment at H-elongata_contig69627:2587..3174-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69627.14610.1 ID=mRNA_H-elongata_contig69627.14610.1|Name=mRNA_H-elongata_contig69627.14610.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=588bp|location=Sequence derived from alignment at H-elongata_contig69627:2587..3174- (Himanthalia elongata Himel1 dioecious)
ATGTGCTGTACGAAGGCGGACGAAGTCTGGAAGAACAAGCTCCGTCCCGA
CCAATACTATGTCCTGCGCATGGTAGGTCATGGTCATCATTCGGTGAAAG
CTTTTACCCCTTGGTTTTAGCACGAATCTCGAATCTCGCGCCGCCTTTTT
CCCTCGCGATACTATGGATGAATTTACGTTATAGAGCTCGAAGTCGCCTT
TTGCCCTCTTGATGCGCTTACATATATCGTTCCCCGTTTGTTTGATCGCC
GAGACGCTGGGGTAGGGGAAAGCACATGCACATTTACCAGGTACTTATTT
GGGGTCATATTAAGTACCCCCCAACACTTTAACCCATCAACACCCCCCTG
GATGCAGGAACCAGAAGTACAAAGTAAGAGATGCTGTTATATTACACCAA
AGCACCACAGAGGTGCCATTAAGTGCACTCTACTTTTGCGGTATTTTTTG
TTTTGTCAGGGAGGCACAGAGCCAGCGTTCACGTCGCCCCTTAATGGGGA
GAAACGAGACGGGGTCTTCGTGTGCGCCGGATGCGATCAGGACCTGTTCC
CGTCGAGTACCAAGTACAACAGCGGGACGGGTTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig69627:2587..3174-

>mRNA_H-elongata_contig69627.14610.1 ID=mRNA_H-elongata_contig69627.14610.1|Name=mRNA_H-elongata_contig69627.14610.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig69627:2587..3174- (Himanthalia elongata Himel1 dioecious)
ATGTGCTGTACGAAGGCGGACGAAGTCTGGAAGAACAAGCTCCGTCCCGA
CCAATACTATGTCCTGCGCATGATGTGCTGTACGAAGGCGGACGAAGTCT
GGAAGAACAAGCTCCGTCCCGACCAATACTATGTCCTGCGCATGGGAGGC
ACAGAGCCAGCGTTCACGTCGCCCCTTAATGGGGAGAAACGAGACGGGGT
CTTCGTGTGCGCCGGATGCGATCAGGACCTGTTCCCGTCGAGTACCAAGT
ACAACAGCGGGACGGGTTGGTGAGGAGGCACAGAGCCAGCGTTCACGTCG
CCCCTTAATGGGGAGAAACGAGACGGGGTCTTCGTGTGCGCCGGATGCGA
TCAGGACCTGTTCCCGTCGAGTACCAAGTACAACAGCGGGACGGGTTGGT
GA
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