mRNA_H-elongata_contig69617.14609.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69617.14609.1
Unique NamemRNA_H-elongata_contig69617.14609.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig69617.14609.1 vs. uniprot
Match: A0A836CLI3_9STRA (Transmembrane amino acid transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLI3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.760e-7
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 2 
Query:  230 YPLGSSGPHQAVMLFANSIVGAGVICMPFALLQCGFWTGI 349
            YP G SG   AV  F N+IVGAG+I +PFA+LQCGFWTG+
Sbjct:   74 YPEGHSGHWGAVFNFVNTIVGAGIIGLPFAILQCGFWTGL 113
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BLAST of mRNA_H-elongata_contig69617.14609.1 vs. uniprot
Match: D8LFS4_ECTSI (Aa_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFS4_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 4.670e-5
Identity = 23/42 (54.76%), Postives = 29/42 (69.05%), Query Frame = 2 
Query:  224 ERYPLGSSGPHQAVMLFANSIVGAGVICMPFALLQCGFWTGI 349
            ERYP G+S    AV  F N+IVGAG+I +PFAL + G W G+
Sbjct:   38 ERYPAGNSSAAGAVSNFVNTIVGAGIIGLPFALAESGLWAGV 79
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69617.14609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CLI3_9STRA1.760e-765.00Transmembrane amino acid transporter protein-domai... [more]
D8LFS4_ECTSI4.670e-554.76Aa_trans domain-containing protein n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69617contigH-elongata_contig69617:1249..2531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCytochrome c oxidase subunit Vb.
Ec32 orthologEc-01_001120.1
Exons2
Model size351
Cds size333
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69617.14609.1prot_H-elongata_contig69617.14609.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69617 1249..2515 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931093.702329-CDS-H-elongata_contig69617:1248..12691622931093.702329-CDS-H-elongata_contig69617:1248..1269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69617 1249..1269 -
1691679695.1703665-CDS-H-elongata_contig69617:1248..12691691679695.1703665-CDS-H-elongata_contig69617:1248..1269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69617 1249..1269 -
1622931093.7240913-CDS-H-elongata_contig69617:2203..25151622931093.7240913-CDS-H-elongata_contig69617:2203..2515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69617 2204..2515 -
1691679695.1836338-CDS-H-elongata_contig69617:2203..25151691679695.1836338-CDS-H-elongata_contig69617:2203..2515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69617 2204..2515 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931093.7583885-UTR-H-elongata_contig69617:2515..25311622931093.7583885-UTR-H-elongata_contig69617:2515..2531Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69617 2516..2531 -
1691679695.1926768-UTR-H-elongata_contig69617:2515..25311691679695.1926768-UTR-H-elongata_contig69617:2515..2531Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69617 2516..2531 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69617.14609.1

>prot_H-elongata_contig69617.14609.1 ID=prot_H-elongata_contig69617.14609.1|Name=mRNA_H-elongata_contig69617.14609.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
MANIGPRQYESLQGGHDKNELEMVVVGTESSVVVEQAELISSEKEPNQRL
ADSFYRYPPGNGDPGGYSTERYPLGSSGPHQAVMLFANSIVGAGVICMPF
ALLQCGFWTGI
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mRNA from alignment at H-elongata_contig69617:1249..2531-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69617.14609.1 ID=mRNA_H-elongata_contig69617.14609.1|Name=mRNA_H-elongata_contig69617.14609.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1283bp|location=Sequence derived from alignment at H-elongata_contig69617:1249..2531- (Himanthalia elongata Himel1 dioecious)
TGAAGTAATATTACCGATGGCGAATATTGGTCCTCGCCAGTATGAAAGCT
TACAGGGTGGGCATGATAAAAACGAGCTTGAGATGGTGGTGGTGGGAACA
GAAAGCAGCGTTGTGGTGGAGCAAGCTGAATTGATCAGCTCGGAAAAAGA
ACCCAACCAACGACTCGCGGATTCCTTTTACCGCTACCCTCCTGGCAACG
GTGATCCTGGCGGATATTCAACGGAGCGCTACCCGCTGGGGAGCAGTGGT
CCTCACCAGGCCGTCATGCTTTTCGCAAACTCTATCGTCGGTGCCGGTGT
GATCTGCATGCCTTTTGCCCTATTACAGGTACGCATCATATTGGGAAAAG
CCTGTGGCATACTGTAGTCGGAGCGAACATATTTGGCACCGAAAATTACA
TAGTAATTTTGAGAGGACCATACGTAAAGAGCCAGCTTCAATAGCACCAT
TGGGTACGAGGAGAAGGTCTTGTCCTTATCTTCAGCCAGGTTCTTCCTTC
TCGAGAGAATCTCAAGATATAGACATATTATTAGCAGGCACCCCCACACT
GCTGTTCATAAGCACAGTCCAGCAATACATTGATAGATAAAACAATATTG
ATATATTCCGATTCCGCATATATATGGTCATCACACATACCAGGTATCAT
ATAGCAGAGTACGATCAACCGGATTTGGTTGCCTCCCGCTTGTGGTCAGC
TGAACAGGGAAATTGAATTTCCCCCTCTGTCCCCGTTGGCGCCAGAGAAT
TAGGCCTCGCGAGACGGGTTTGGCAGTTCCGTCTCGCGTCAGCCCCCTCA
TTCTCTCAACCCAGGCTGAATCTGGTGCGTACTCCCGGGATCCTGTCGTT
TTCCGCGACGGCGTCTATCTCCATCGTCAACCGCCATCGGGCAGGTTACG
CAATTGCGTACCGATGACGTTTACCACCGAGAGTCCGTCGGCACTGAGCC
AGCAGTCCTCAAGGCAGCTTGAGTAACGGATGCAGCCTATTTAGGTAACC
CCATGGACCAGTTATTCTACGCCTCTCTTTTCCCACACCCACTATTAGTA
GAATGGACAGCATATCGATACGATTCCAGAAAGAAATTTGACGTATACAG
TATAGTACAGGTAGGAGCGTATGTGTGCATCATTCAGAACAATTCGGTTC
CGTCCAACAGTTTCTCAATCTTCCAAACATTTTTTTAGGCGTCTAATATC
TAATTTCCTCGTGCCGTCATCCATCCACCGGAACCATAACGATATCCACT
CCACTCCACCAGTGCGGGTTCTGGACGGGCATC
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Coding sequence (CDS) from alignment at H-elongata_contig69617:1249..2531-

>mRNA_H-elongata_contig69617.14609.1 ID=mRNA_H-elongata_contig69617.14609.1|Name=mRNA_H-elongata_contig69617.14609.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig69617:1249..2531- (Himanthalia elongata Himel1 dioecious)
ATGGCGAATATTGGTCCTCGCCAGTATGAAAGCTTACAGGGTGGGCATGA
TAAAAACGAGCTTGAGATGGTGGTGGTGGGAACAGAAAGCAGCGTTGTGG
TGGAGCAAGCTGAATTGATCAGCTCGGAAAAAGAACCCAACCAACGACTC
GCGGATTCCTTTTACCGCTACCCTCCTGGCAACGGTGATCCTGGCGGATA
TTCAACGGAGCGCTACCCGCTGGGGAGCAGTGGTCCTCACCAGGCCGTCA
TGCTTTTCGCAAACTCTATCGTCGGTGCCGGTGTGATCTGCATGCCTTTT
GCCCTATTACAGATGGCGAATATTGGTCCTCGCCAGTATGAAAGCTTACA
GGGTGGGCATGATAAAAACGAGCTTGAGATGGTGGTGGTGGGAACAGAAA
GCAGCGTTGTGGTGGAGCAAGCTGAATTGATCAGCTCGGAAAAAGAACCC
AACCAACGACTCGCGGATTCCTTTTACCGCTACCCTCCTGGCAACGGTGA
TCCTGGCGGATATTCAACGGAGCGCTACCCGCTGGGGAGCAGTGGTCCTC
ACCAGGCCGTCATGCTTTTCGCAAACTCTATCGTCGGTGCCGGTGTGATC
TGCATGCCTTTTGCCCTATTACAGTGCGGGTTCTGGACGGGCATCTGCGG
GTTCTGGACGGGCATC
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