mRNA_H-elongata_contig6957.14604.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6957.14604.1
Unique NamemRNA_H-elongata_contig6957.14604.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6957.14604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6957contigH-elongata_contig6957:283..1673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size438
Cds size438
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6957.14604.1prot_H-elongata_contig6957.14604.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6957 283..1673 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931093.285617-CDS-H-elongata_contig6957:282..3811622931093.285617-CDS-H-elongata_contig6957:282..381Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6957 283..381 +
1691679695.0026157-CDS-H-elongata_contig6957:282..3811691679695.0026157-CDS-H-elongata_contig6957:282..381Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6957 283..381 +
1622931093.2981496-CDS-H-elongata_contig6957:889..10151622931093.2981496-CDS-H-elongata_contig6957:889..1015Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6957 890..1015 +
1691679695.0130587-CDS-H-elongata_contig6957:889..10151691679695.0130587-CDS-H-elongata_contig6957:889..1015Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6957 890..1015 +
1622931093.3158195-CDS-H-elongata_contig6957:1460..16731622931093.3158195-CDS-H-elongata_contig6957:1460..1673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6957 1461..1673 +
1691679695.0230048-CDS-H-elongata_contig6957:1460..16731691679695.0230048-CDS-H-elongata_contig6957:1460..1673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6957 1461..1673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6957.14604.1

>prot_H-elongata_contig6957.14604.1 ID=prot_H-elongata_contig6957.14604.1|Name=mRNA_H-elongata_contig6957.14604.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
LGGKHRAAGDGARVGVVLGQGGLCTMLLSACEENREPLARADAVSGVVGI
HRLGRTRPISGVKSLQGVPERNELRIPRGILAPNADPRGDSFGAIGDVGV
VSCMGRGRAQRGPWVRAGWCGGVAVVEGLSASRGAVRSARDGGGP*
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mRNA from alignment at H-elongata_contig6957:283..1673+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6957.14604.1 ID=mRNA_H-elongata_contig6957.14604.1|Name=mRNA_H-elongata_contig6957.14604.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1391bp|location=Sequence derived from alignment at H-elongata_contig6957:283..1673+ (Himanthalia elongata Himel1 dioecious)
CTCGGCGGCAAACACCGGGCGGCTGGTGATGGCGCTCGTGTGGGCGTGGT
CCTCGGTCAAGGCGGTCTCTGTACTATGCTTCTTTCGGCTTGCGAGGAGG
TGAGACTAAGGCTGAGGCTTGGGTGAGGAATCATGTCATGATGTATGATG
GACCCCTCGTTCCGCATGGCACACGTACGTAGGTTTATCTCTTGACAATG
CGATACGCCGGTAATGGTGACTAGTAATATGAATAGTGCAAGGGTGCGGT
GTAACAATATTATACTGTTGGGGAACCCGATTAATCATTAATCATTAATC
ATTAATCTCATTTCGCGATTTTGTGCTGATAGCTAGTAAGATATACGTTG
AACCTGACGATAGTTGGTCCCTCCCTCCCTCCCTCCCTCTCTCCCCTGGA
TTTCACCGAGTCTGGTGTAGAGAAGGTGTGGATGTTCGGAGGGTTTCAAT
TAGTTGATATGTTGTTGTTTTTTGTTTAAGGAAAAGGGTATGTGTAACGC
ACGGCGCGCGCTCGAGATAAAACAATGACTAGGGCAGTTCCTTGTGAGCG
CCATGCAATCTGAATCGCAATCGCTGCCTCTCCCCCCTCCCCTCCCGTCT
CTCCAAGAACCGAGAGCCCCTGGCTCGCGCTGACGCTGTTTCAGGTGTCG
TTGGTATACACCGCCTCGGTCGGACCCGCCCTATTTCAGGTGTCAAAAGC
CTCCAAGGAGTTCCAGAGCGGAACGAGCTTCGGGTCAGTGTGTGTGTGTG
TGTGTGCTTGTGTATTTTTTTTTAGTTGCGCATAACCGCGCAATCTGGCC
TCATCATGCTATACAGTCGTTCTATGCTACTCTAGCAACGATCCTCCCAA
TGGGAATCAAATATATATTTTACAAAAGCCTCTGATCAGACGCGACAGAG
GGGACAGAGGGGACATACTCTCTCTTTACAGTTTTTGTGTTAAGTCGTCT
TGCGCTTCCCTCTCTGCTACCTTGTTCTCTCTGGCATGTCTGTGCTCATT
TTTCCCTGTTTCTTGATGCTGGACAGGCATGCCACAGACATGCCCACATA
CTCTAGCCTAGCCTAGTCTAGTCTACGGCCTATACCCAGCTTTTTTTAAT
CGCGATGTATTCGGTAACCCCTAACCCCCCGTCGTCGTCCTTACTATGGC
GCGAAAATGATGCTTCCTGAGTGTGCAGATACCTCGTGGCATCCTGGCAC
CTAATGCTGACCCTCGCGGCGACAGCTTCGGCGCCATCGGCGACGTCGGC
GTGGTCTCTTGCATGGGACGGGGCCGTGCTCAGAGAGGGCCTTGGGTCCG
CGCTGGTTGGTGCGGCGGCGTGGCAGTTGTCGAGGGTCTCTCGGCGTCGC
GTGGAGCGGTCCGCTCGGCACGGGATGGTGGTGGCCCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig6957:283..1673+

>mRNA_H-elongata_contig6957.14604.1 ID=mRNA_H-elongata_contig6957.14604.1|Name=mRNA_H-elongata_contig6957.14604.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig6957:283..1673+ (Himanthalia elongata Himel1 dioecious)
CTCGGCGGCAAACACCGGGCGGCTGGTGATGGCGCTCGTGTGGGCGTGGT
CCTCGGTCAAGGCGGTCTCTGTACTATGCTTCTTTCGGCTTGCGAGGAGC
TCGGCGGCAAACACCGGGCGGCTGGTGATGGCGCTCGTGTGGGCGTGGTC
CTCGGTCAAGGCGGTCTCTGTACTATGCTTCTTTCGGCTTGCGAGGAGAA
CCGAGAGCCCCTGGCTCGCGCTGACGCTGTTTCAGGTGTCGTTGGTATAC
ACCGCCTCGGTCGGACCCGCCCTATTTCAGGTGTCAAAAGCCTCCAAGGA
GTTCCAGAGCGGAACGAGCTTCGGAACCGAGAGCCCCTGGCTCGCGCTGA
CGCTGTTTCAGGTGTCGTTGGTATACACCGCCTCGGTCGGACCCGCCCTA
TTTCAGGTGTCAAAAGCCTCCAAGGAGTTCCAGAGCGGAACGAGCTTCGG
ATACCTCGTGGCATCCTGGCACCTAATGCTGACCCTCGCGGCGACAGCTT
CGGCGCCATCGGCGACGTCGGCGTGGTCTCTTGCATGGGACGGGGCCGTG
CTCAGAGAGGGCCTTGGGTCCGCGCTGGTTGGTGCGGCGGCGTGGCAGTT
GTCGAGGGTCTCTCGGCGTCGCGTGGAGCGGTCCGCTCGGCACGGGATGG
TGGTGGCCCTTGAATACCTCGTGGCATCCTGGCACCTAATGCTGACCCTC
GCGGCGACAGCTTCGGCGCCATCGGCGACGTCGGCGTGGTCTCTTGCATG
GGACGGGGCCGTGCTCAGAGAGGGCCTTGGGTCCGCGCTGGTTGGTGCGG
CGGCGTGGCAGTTGTCGAGGGTCTCTCGGCGTCGCGTGGAGCGGTCCGCT
CGGCACGGGATGGTGGTGGCCCTTGA
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