mRNA_H-elongata_contig69488.14598.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69488.14598.1
Unique NamemRNA_H-elongata_contig69488.14598.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig69488.14598.1 vs. uniprot
Match: D8LPS4_ECTSI (Dolichyl-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-dolichol alpha-1,2-glucosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPS4_ECTSI)

HSP 1 Score: 333 bits (854), Expect = 3.340e-104
Identity = 211/460 (45.87%), Postives = 250/460 (54.35%), Query Frame = 1
Query:    1 GQWDPKITTPPGLYVFGLVYARFV-----------GYFASVVRSSGPWFGGQECGAVVLRNVNWGLSVGTIGVMRAILARRMPAGKAMAHAVLLWMYPVSFFFSFLYYTDPGATFFVFLCYLLSTGPPRGGTWWRRSGSALAGTAAVLFRQTNAVWVAFTLAVCLLEDFAP-LVRLDRPVGGADTSAEDAGTDCAMGTKSWRLIGGGNTS-----------------LGSDSGSRLLGGCDVGNSAASLT-------------------------RKRKSSSSGDPSSL-VPRG-----------GGTEPGGYDSVIRGKRLRKGEGYEDRTSPENAPFPPLPNLLLRFIRAALDDAYRGAPLLRCRVPLGLPVVLFVIFVWGFNDGAVVLGDKENHSPGGPPHLAQVAYLSAVGASLWGLVG-REAAVAAEARKGFVRWVVNRGLIGVAATVGAVAFAL 1179
            G WDPKITTPPGLY F + YA  +           G   +  R +G +   ++C A VLR  NWGLS+G + VMR++  RRM  GKA+AHA+LLW+YPVSFFFSFL YTD GATFFV LCYLL+TGPPRGG W RR  SALAG  +VLFRQTNAVWVAFTLA CLL+DF P +V   R   G D SA       A+   S R      T                   G  + +  +GG D G                                +KR  S S   + + + RG           G    GG ++ I   + R G  +           PP P LLL   RAAL DA RG  LLR R PL +PV LF +FVWGFN GAVV+GDKENHSPGGPPHLAQ+AYL+A GASLWG+VG REA +  +AR+GF RW    G   VA  V  VA  L
Sbjct:   20 GTWDPKITTPPGLYAFAVAYAGLLTALREALLLLQGTATASSRVAGLFISQEQCVAAVLRQANWGLSLGALAVMRSLFVRRMAPGKALAHALLLWLYPVSFFFSFLLYTDTGATFFVLLCYLLATGPPRGGGWGRRLASALAGGVSVLFRQTNAVWVAFTLAACLLDDFTPSVVAAVRVSPGGDVSARAPAGALAVEPSSRRARDAAGTGSRLKSAGSWEHPLAPPCAGDGAAAEAVGGLDEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQKRVGSGSQQDAEVGLSRGXXXXXXXLGTDGEQTTGGSNNDIDSAQPRNGGAHPS--------LPPTPRLLLGLARAALTDASRGGTLLRARAPLAIPVALFAVFVWGFNGGAVVIGDKENHSPGGPPHLAQLAYLAATGASLWGVVGGREALLGRDARRGFARWA-GGGRGRVATVVAGVAAVL 470          
BLAST of mRNA_H-elongata_contig69488.14598.1 vs. uniprot
Match: A0A813EN98_POLGL (Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EN98_POLGL)

HSP 1 Score: 134 bits (337), Expect = 1.150e-30
Identity = 126/398 (31.66%), Postives = 174/398 (43.72%), Query Frame = 1
Query:    4 QWDPKITTPPGLYVFGLVYARFVGYFASVVRSSGPWFGGQECGAVVLRNVNWGLSVGTIGVMRAILARRMPAGKAMAHAVLLWMYPVSFFFSFLYYTDPGATFFVFLCYLLSTGPPRGG---TWWRRSGSALAGTAAVLFRQTNAVWVAFTLAVCLLEDFAPLVRLDRPVGGADTSAEDAGTDCAMGTKSWRLIGGGNTSLGSDSGSRLLGGCDVGNSAASLTRKRKSSSSGDPSSLVPRGGGTEPGGYDSVIRGKRLRKGEGYEDRTSPENAPFPPLPNLLLRFIRAALDDAYRGAPLLRCRVPLGLPVVLFVIFVWGFNDGAVVLGDKENHSPGGPPHLAQVAYLSAVGASLWGLVGREAAVAAEARKGF--VRWVVNRGLIGVAATVGAVAFALH 1182
            +WD KITT PGLYVF           A++ R S P FGGQ C    LR  N  LS+G   ++  +L RR+P  KA A A+ L +YP+ FF +F+YYTD G+ F+  L + L+T P RG    T  R   +A+AG  A+LFRQTNAVW+ F+     L D                            T  W                                                             +RG+ L                    P+LL  F +A L ++ R   L+    PL +PV+LFV FV   ++G++V+GDK NH      H AQ+AYLSAV A++WGLVG +AAV+A + + F   R+   R ++  A  +  + F LH
Sbjct:   52 EWDEKITTFPGLYVFS----------AALSRVSRP-FGGQLCSPARLRADNALLSLGVQVLLYRLLRRRLPPAKAAAQALALSLYPIHFFCAFIYYTDVGSLFWALLVHDLAT-PSRGRALPTSGRIVLAAVAGLVAILFRQTNAVWMMFSFGTAALGDL-------------------------QSTHKW----------------------------------------------------------GPQLRGEELT-------------------PSLLFTFAKALLLESRR---LVFRLGPLLIPVLLFVAFV--VHNGSIVVGDKSNHEAS--VHWAQLAYLSAVTAAMWGLVGPDAAVSAGSLRAFCKARFGSLRAVLLTAVALCLLVFVLH 328          
BLAST of mRNA_H-elongata_contig69488.14598.1 vs. uniprot
Match: A0A835Z5I3_9STRA (Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5I3_9STRA)

HSP 1 Score: 114 bits (286), Expect = 7.850e-24
Identity = 74/174 (42.53%), Postives = 92/174 (52.87%), Query Frame = 1
Query:    4 QWDPKITTPPGLYVFGLVYARFVGYFASVVRSSGPWFGGQECGAVVLRNVNWGLSVGTIGVMRAILARRMPAGKAMAHAVLLWMYPVSFFFSFLYYTDPGATFFVFLCYLLSTGPP-----RGGTWWRRSGSALAGTAAVLFRQTNAVWVAFTLAVCLLEDF---APLVRLDRP 501
            +WDPKITT PGLY+           F  V+R          C AV LR +N   S+ T+ VM A+L RRM   +A AHA  +W+YP SFFF+FL+YTDPG+TFFV     L               WR   +AL    A++FRQTNAVW AF L   LL+     +PL  L  P
Sbjct:   56 EWDPKITTLPGLYIVASTT------FVPVLRLITD----HACEAVPLRLLNAVFSLITMAVMVALLRRRMGFNQAAAHAATMWLYPSSFFFTFLFYTDPGSTFFVLATIWLVQEAAFETAVLASPGWRVFAAALTSAGAIMFRQTNAVWCAFILGTALLQQLQALSPLTLLTVP 219          
BLAST of mRNA_H-elongata_contig69488.14598.1 vs. uniprot
Match: D0P4R1_PHYIT (Dolichyl-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-dolichol alpha-1,2-glucosyltransferase n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0P4R1_PHYIT)

HSP 1 Score: 97.4 bits (241), Expect = 2.410e-19
Identity = 64/154 (41.56%), Postives = 85/154 (55.19%), Query Frame = 1
Query:    4 QWDPKITTPPGLYVFGLVYARFVGYFASVVRSSGPWFGGQECGAVVLRNVNWGLSVGTIGVMRAILARRMPAGK-AMAHAVLLWMYPVSFFFSFLYYTDPGATFFVFLCYLLSTG------PPRGGTWWRRSGSALAGTAAVLFRQTNAVWVAF 444
            +WDPKITT PGLY+   +YA+    F +             C   VLR+VN   +VG + +  +I     P    A+ HA+ + ++P  FFF+FL+YTD GATFFV L  LL+        PP  G++     SAL+G  AVLFRQTN VWV F
Sbjct:   66 EWDPKITTFPGLYLVSTLYAKLASTFNT----------DDFCSVAVLRSVNVLFAVGNVVLCASIRHHVAPQDPHALLHALRIAVFPPLFFFTFLFYTDGGATFFVLLMALLAERVDLLQYPPARGSFML---SALSGAVAVLFRQTNIVWVVF 206          
BLAST of mRNA_H-elongata_contig69488.14598.1 vs. uniprot
Match: A0A8K1CCJ0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCJ0_PYTOL)

HSP 1 Score: 100 bits (248), Expect = 7.050e-19
Identity = 66/165 (40.00%), Postives = 84/165 (50.91%), Query Frame = 1
Query:    4 QWDPKITTPPGLYVFGLVYARFVGYFASVVRSSGPWFG----GQECGAVVLRNVNWGLSVGTIGVMRAILARRMPA-GKAMAHAVLLWMYPVSFFFSFLYYTDPGATFFVFLCYLLSTGPPRGGTWWRRSG------SALAGTAAVLFRQTNAVWVAFTLAVCLL 465
            +WDPKITT PG+Y  G+ +AR              W G    G  C   VLR+VN   + G   ++  +    MP     + HA+++  +PV FFFSF+YYTD GA FFV L Y L+    R     R         SA+AG AAVLFRQTN VWV F     L+
Sbjct:   49 EWDPKITTFPGVYFVGVAFARLY-----------QWLGLSDTGSFCSISVLRSVNVAFAAGNTWLIIRLRQLLMPTDSNLLLHALMITAFPVQFFFSFVYYTDAGAVFFVLLMYFLAL---RANLVVRPVSPVGLITSAMAGAAAVLFRQTNIVWVLFVAGTTLV 199          
BLAST of mRNA_H-elongata_contig69488.14598.1 vs. uniprot
Match: A0A1S3JEU2_LINUN (Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JEU2_LINUN)

HSP 1 Score: 98.6 bits (244), Expect = 2.260e-18
Identity = 61/157 (38.85%), Postives = 83/157 (52.87%), Query Frame = 1
Query:    4 QWDPKITTPPGLYVFGLVYARFVGYFASVVRSSGPWFGGQECGAVVLRNVNWGLSVGTIGVMRAILARRMPAGK------AMAHAVLLWMYPVSFFFSFLYYTDPGATFFVFLCYLLSTGPPRGGTWWRRSGSALAGTAAVLFRQTNAVWVAFTLAV 456
            +WDPKITT PGLY+  L   + VG+          W     C  + LR +N   S+G   +  A++ +     K      A+  AV+L ++PV +FF+FLYYTDPG+TFF  L YLLS              +A+ G  A+LFRQTN +WVAF   V
Sbjct:   58 EWDPKITTFPGLYLISLGVLKPVGWLMG-------WDEDTTCSVLNLRAINIMFSIGNFYLFLALIRKIHGKDKNYQDTVAVVTAVVLSLFPVMYFFTFLYYTDPGSTFFTLLMYLLSLHD-------NHKVAAMMGLVAILFRQTNVIWVAFVAGV 200          
BLAST of mRNA_H-elongata_contig69488.14598.1 vs. uniprot
Match: A0A6A3W7K7_9STRA (Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3W7K7_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.510e-18
Identity = 68/156 (43.59%), Postives = 91/156 (58.33%), Query Frame = 1
Query:    4 QWDPKITTPPGLYVFGLVYARFVGYFASVVRSSGPWFGGQECGAVVLRNVNWGLSVGTIGVMRAILARRMPAGK---AMAHAVLLWMYPVSFFFSFLYYTDPGATFFVFLCYLLSTG------PPRGGTWWRRSGSALAGTAAVLFRQTNAVWVAF 444
            +WDPKITT PGLY+   +YA+          +S   FG   C   VLR+VN   +VG +G+   +L RR  A +   A+ HA+ + ++P  FFF+FL+YTD GATFFV L  LL+        PP  G++     SA++G  AVLFRQTN VWV F
Sbjct:   69 EWDPKITTFPGLYLASTLYAK---------AASTLGFG-AFCSVSVLRSVNVMFAVGNVGL--CVLLRRHVAPRDPNALLHALRVAVFPPLFFFAFLFYTDGGATFFVLLMALLAEKVDLLQYPPARGSFML---SAMSGAVAVLFRQTNIVWVVF 209          
BLAST of mRNA_H-elongata_contig69488.14598.1 vs. uniprot
Match: A0A812X0B1_SYMPI (Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812X0B1_SYMPI)

HSP 1 Score: 97.4 bits (241), Expect = 3.770e-18
Identity = 67/159 (42.14%), Postives = 86/159 (54.09%), Query Frame = 1
Query:    4 QWDPKITTPPGLYVFGLVYARFVGYFASVVRSSGPWFGGQECGAVVLRNVNWGLSVGTIGVMRAILARRMPAGKAMAHAVLLWMYPVSFFFSFLYYTDPGATFFVFLCYLLSTGPPRGGTW---WRRSGSALAGTAAVLFRQTNAVWVAFTLAVCLLED 471
            +WDPKITT PGLYV   +  R VG        SG  F    CG  +LR  N    +G   V   +L RR+   KA A +++L +YP+ FF+  LYYTD G+ F+V L   + T P RG      WR +  A  G  AVLFRQTNAVW+ F+     L+D
Sbjct:   20 EWDPKITTFPGLYVSSCLL-RGVGL-------SGMGF----CGKDMLRLDNAFFGLGVHAVSYRLLRRRLDPSKAAAQSLMLSLYPIHFFYQLLYYTDVGSLFWVLLVQDIVT-PGRGQALPGPWRIAVGAATGAVAVLFRQTNAVWLMFSFGTAALQD 165          
BLAST of mRNA_H-elongata_contig69488.14598.1 vs. uniprot
Match: G7L3H5_MEDTR (Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase n=6 Tax=IRL clade TaxID=2233839 RepID=G7L3H5_MEDTR)

HSP 1 Score: 97.8 bits (242), Expect = 4.880e-18
Identity = 71/195 (36.41%), Postives = 97/195 (49.74%), Query Frame = 1
Query:    1 GQWDPKITTPPGLYVFGLVY--ARFVGYFASVVRSSGPWFGGQECGAVVLRNVNWGLSVGTIGVMRAILARRMPA---GKAMAHAVLLWMYPVSFFFSFLYYTDPGATFFVFLCYLLSTGPPRGGTWWRRSGSALAGTAAVLFRQTNAVWVAFTLAVCLLEDFAPLVRLDRPVGGADTSAEDAGTD----CAMGT 558
            G WDP ITTPPGLY   L +  + F G+F     SS        C A +LR++N  L+V    ++  I+    P     KAM HAV+L +YP+ +FF+FLYYTD  +   V   YL S        +W    SAL G  AV+ RQTN +WV F   + +++     + L    G A T+  D   +    CA GT
Sbjct:   48 GSWDPMITTPPGLYYLSLAHIASLFPGFFCVEASSSFT----DMCSAAILRSINGVLAVICSIILYDIIIHLKPTLGDRKAMLHAVVLSLYPLHWFFTFLYYTDVASVTAVLAMYLASLKK----NYWL---SALVGAFAVVVRQTNIIWVLFVACIGIID-----MSLMHGKGNAKTAKSDVSIEHDFTCATGT 226          
BLAST of mRNA_H-elongata_contig69488.14598.1 vs. uniprot
Match: A0A2D4BSI3_PYTIN (Dolichyl-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-dolichol alpha-1,2-glucosyltransferase (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BSI3_PYTIN)

HSP 1 Score: 96.7 bits (239), Expect = 6.870e-18
Identity = 66/157 (42.04%), Postives = 86/157 (54.78%), Query Frame = 1
Query:    4 QWDPKITTPPGLYVFGLVYARFVGYFASVVRSSGPWFGGQECGAVVLRNVNWGLSVGTIGVMRAILARRMPAGK-AMAHAVLLWMYPVSFFFSFLYYTDPGATFFVFLCYLL---------STGPPRGGTWWRRSGSALAGTAAVLFRQTNAVWVAF 444
            +WDPKITT PG+YV     A  V + +S      P      C   +LR VN   ++G   ++  +    +P+ + ++ HA  +  +PVSFFFSFL+YTD GATFFV L YLL         ST P R         SA+AG+ AVLFRQTN VWV F
Sbjct:   56 EWDPKITTFPGVYVVATALAHAVRWLSSAPADD-PTI---VCSTALLRGVNVLFAMGNAWLLVRLRTMIVPSDRNSLLHAWTIIAFPVSFFFSFLFYTDMGATFFVLLMYLLALPTSTHVESTSPIR------FLPSAIAGSLAVLFRQTNIVWVVF 202          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69488.14598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPS4_ECTSI3.340e-10445.87Dolichyl-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-dolichol a... [more]
A0A813EN98_POLGL1.150e-3031.66Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-g... [more]
A0A835Z5I3_9STRA7.850e-2442.53Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-g... [more]
D0P4R1_PHYIT2.410e-1941.56Dolichyl-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-dolichol a... [more]
A0A8K1CCJ0_PYTOL7.050e-1940.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1S3JEU2_LINUN2.260e-1838.85Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-g... [more]
A0A6A3W7K7_9STRA2.510e-1843.59Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-g... [more]
A0A812X0B1_SYMPI3.770e-1842.14Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-g... [more]
G7L3H5_MEDTR4.880e-1836.41Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-g... [more]
A0A2D4BSI3_PYTIN6.870e-1842.04Dolichyl-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-dolichol a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69488contigH-elongata_contig69488:352..2814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionAlpha-1,2-glucosyltransferase ALG10-A, family GT59
Ec32 orthologEc-18_002280.1
Exons4
Model size1526
Cds size129
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69488.14598.1prot_H-elongata_contig69488.14598.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69488 2686..2814 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931092.745874-UTR-H-elongata_contig69488:351..5641622931092.745874-UTR-H-elongata_contig69488:351..564Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69488 352..564 +
1691679694.7933247-UTR-H-elongata_contig69488:351..5641691679694.7933247-UTR-H-elongata_contig69488:351..564Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69488 352..564 +
1622931092.7633038-UTR-H-elongata_contig69488:1046..12231622931092.7633038-UTR-H-elongata_contig69488:1046..1223Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69488 1047..1223 +
1691679694.8021204-UTR-H-elongata_contig69488:1046..12231691679694.8021204-UTR-H-elongata_contig69488:1046..1223Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69488 1047..1223 +
1622931092.7819674-UTR-H-elongata_contig69488:1527..23211622931092.7819674-UTR-H-elongata_contig69488:1527..2321Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69488 1528..2321 +
1691679694.8111503-UTR-H-elongata_contig69488:1527..23211691679694.8111503-UTR-H-elongata_contig69488:1527..2321Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69488 1528..2321 +
1622931092.8005571-UTR-H-elongata_contig69488:2472..26851622931092.8005571-UTR-H-elongata_contig69488:2472..2685Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69488 2473..2685 +
1691679694.8239918-UTR-H-elongata_contig69488:2472..26851691679694.8239918-UTR-H-elongata_contig69488:2472..2685Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69488 2473..2685 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931092.8137054-CDS-H-elongata_contig69488:2685..28141622931092.8137054-CDS-H-elongata_contig69488:2685..2814Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69488 2686..2814 +
1691679694.8338344-CDS-H-elongata_contig69488:2685..28141691679694.8338344-CDS-H-elongata_contig69488:2685..2814Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69488 2686..2814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69488.14598.1

>prot_H-elongata_contig69488.14598.1 ID=prot_H-elongata_contig69488.14598.1|Name=mRNA_H-elongata_contig69488.14598.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
MLSRLLERKTSLWVLTYSAAVALVLVPSPLLEPRWEIMTVSG*
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mRNA from alignment at H-elongata_contig69488:352..2814+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69488.14598.1 ID=mRNA_H-elongata_contig69488.14598.1|Name=mRNA_H-elongata_contig69488.14598.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2463bp|location=Sequence derived from alignment at H-elongata_contig69488:352..2814+ (Himanthalia elongata Himel1 dioecious)
GGACAATGGGATCCGAAGATCACCACCCCGCCTGGGCTGTACGTGTTCGG TCTGGTCTACGCGAGGTTTGTGGGCTATTTCGCTAGTGTGGTTCGCTCGT CGGGACCATGGTTTGGTGGCCAAGAGTGCGGAGCGGTGGTGCTTCGGAAC GTGAACTGGGGGTTATCTGTCGGCACGATAGGCGTGATGAGGGCCATCCT TGCGAGGCGTATGGTGAGATGAGGACGGGGGAGGTGTACCAACGGGTGCT ATTGGGGGGTAAGTAGTGCGCGCGCCTTGCCGAATCATTAATCTCTCTGT TCTGTCACTCCGCCACTTCTCTTACGAAAGTAGTAGTTTGTGATTATTAG AAACTAATTCATTTCTAGTGAAGCGTAAGCGATATGCGGCACAGGTGGAG GGGTGAAGCGCTGCGTTGACGCCCACGCGGGCAAACCAACTGATTCGTCG CGCACGATATGACAAGAGAGTGTCATGACTCGTTTGAGGAGTTTAGTCGC GTAATGCGCTCCTGTTCTCGTGGTCGCTATTTTACCTCTCTCGAGCACAG TATATTTATTCCCGCTCCCACGAGACGAGGGAGCATTGGCGGTGATACCA TTAACCGCCTTTCTATCCTTCCACCTCCTACGCACACACACACACAATCC CCACCCCCGCCGCCTCTCCCCATCCTCTCCTTACGGCTCCCTCAGCCGGC AGGAAAGGCGATGGCCCACGCCGTTCTCCTGTGGATGTATCCGGTTTCGT TTTTCTTCTCTTTCTTGTACTACACGGACCCCGGAGCGACCTTTTTCGTG TTCCTGTGCTACCTTCTGTCCACTGGGCCACCAAGAGGGGGAACGTGGTG GAGGAGGAGCGGCAGCGCGTTGGTGAGCGCGGCCGGTCCTGGTGGATTTC CAACCCCAACGTGTCTCCGAGGTGTCTAACAGAGTCATATTTACCTGACG CTGCGCGCCGGAGATAAAAAAAGTACACGGCGAGCCGTGGCGAGAGGATC CCACTGGATCCGTTCGGCCCGTCTCGCGACTGGGAAAAAAAACTAGACCC GAGACGCGACAATCGGTTCATTTTACCTGTGCCCTTTATCCTCCTCCCTT CTTGCGAGATTAATCTCCCAATCGTTTTTCTTCGTCACCCGCGTCTGAAC CGCCCCCGCCCGCTCCCTCGGGACAGGCGGGGACCGCGGCCGTGCTCTTC CGGCAGACGAACGCCGTCTGGGTTGCCTTCACGCTGGCCGTTTGCCTCTT GGAAGACTTCGCGCCGTTGGTCAGGTTGGACAGGCCCGTCGGCGGCGCCG ACACAAGTGCAGAGGACGCGGGCACAGACTGCGCGATGGGGACGAAATCT TGGAGACTCATCGGTGGTGGGAACACTTCCTTGGGCAGCGACTCGGGCAG TCGTCTCCTGGGGGGATGCGACGTTGGCAATTCGGCAGCGTCCTTAACAA GAAAGAGAAAATCGAGCAGCTCGGGTGATCCGAGCTCGCTCGTTCCCCGC GGCGGGGGTACCGAGCCGGGTGGTTACGACAGCGTAATACGCGGAAAGCG TCTTCGGAAGGGGGAAGGATACGAGGACCGAACTTCCCCAGAAAACGCCC CCTTTCCACCTCTCCCGAATCTTCTGCTGCGATTCATTCGAGCCGCCTTG GATGACGCGTACCGCGGGGCACCGCTCCTCCGGTGTCGCGTGCCTCTCGG TCTTCCGGTGGTTCTGTTCGTCATCTTCGTGTGGGGGTTTAATGACGGTG CGGTCGTTCTAGGGGACAAGGAGAATCACTCCCCGGGAGGGCCACCGCAC CTCGCGCAGGTCGCGTACCTGAGCGCGGTCGGGGCATCGCTCTGGGGGCT GGTCGGGCGGGAGGCCGCTGTGGCTGCAGAAGCTCGGAAGGGTTTCGTTC GCTGGGTGGTCAACAGGGGCCTGATCGGGGTCGCAGCAACCGTAGGCGCC GTGGCATTTGCCCTGCACAGGTAAGAACAGCCGAACGGAATATGTATGGT AGCGCGACCGGCTGATAACGTAGTAGTGTCGATTTGCCTGTAAGTTTCGC TCGAAGCACTGTGCTTATATGCTGCTGTCCCGAATCATCGACTATGGCGT CCATCCTTACTCGTACAACAGTTGCTGGATTGATAACTACCCCCCCCCCC CCCCCCCCCCCCTCTTCTTGCTTTCTCCCACACACCCTCCCTCACTCCGT CTCCATCCCTTCTTGCGCACCCGTTCCTTGTCTCGGACAACCGACACTAC TCTTTTTACGTCTGGCAGCGCCTGCTCAGCTCCGCCACCGCACGCGTAGC ATTGACTCCGGCGTATGTGTTCTGCGCGTGGCTGATGTTGTCACGCCTCC TGGAGAGGAAAACCTCTCTGTGGGTGCTGACGTACTCGGCAGCGGTGGCG CTTGTGCTCGTGCCGTCGCCTCTTCTGGAACCGAGGTGGGAAATTATGAC GGTATCTGGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig69488:352..2814+

>mRNA_H-elongata_contig69488.14598.1 ID=mRNA_H-elongata_contig69488.14598.1|Name=mRNA_H-elongata_contig69488.14598.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at H-elongata_contig69488:352..2814+ (Himanthalia elongata Himel1 dioecious)
ATGTTGTCACGCCTCCTGGAGAGGAAAACCTCTCTGTGGGTGCTGACGTA
CTCGGCAGCGGTGGCGCTTGTGCTCGTGCCGTCGCCTCTTCTGGAACCGA
GGTGGGAAATTATGACGGTATCTGGGTAGATGTTGTCACGCCTCCTGGAG
AGGAAAACCTCTCTGTGGGTGCTGACGTACTCGGCAGCGGTGGCGCTTGT
GCTCGTGCCGTCGCCTCTTCTGGAACCGAGGTGGGAAATTATGACGGTAT
CTGGGTAG
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