mRNA_H-elongata_contig69376.14585.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig69376.14585.1 vs. uniprot
Match: A0A6H5K2R2_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R2_9PHAE) HSP 1 Score: 181 bits (458), Expect = 2.080e-49 Identity = 104/249 (41.77%), Postives = 141/249 (56.63%), Query Frame = -1
Query: 3 PRESFIPADAPGGLSEEDDIRRALQSL---KRGSGNSTTVNYQWAGEPLREDNTPHLATMYFPTLVPTGAGDPFWGARLRKVSLIDTLTHLMKFADMPAEGANEAPCYRFACHRTFAYWCPNIRMRSQAKEQTRVFLNRNSEQVELPMGQVGER---EIQQLVGAATRWTANISGMDGYWLVRGSELE*AVNQLNCPSAFVTYSAADHHWHDMHSLFPIV----GDEPSPGDPAAVRDLGERHRSLIDN 719
PRESFIP D G +ED++R L+ L + G S V++ +PL E TP LAT FP L P GA DP GAR R V +D +THL+KF D E E YRF HR FAYWC + ++RSQA+ Q R+F+N N ++ + +V + +Q ++ +R+TAN+ G DG+W LE AV+QL + F TYSAADHHW+D+H L P D+P+P +R + LIDN
Sbjct: 227 PRESFIPTDGTGETPQEDEVRACLERLAARRDGGDASARVHHPRQLDPLPEHQTPFLATKCFPCLFPRGAADPTSGARRRGVDFVDHVTHLLKFVDAVEE---ERYHYRFVSHRLFAYWCMDTKVRSQARTQCRMFMNNNPHIAQMSVDEVFDNIWDNVQGIMTHMSRYTANLPGTDGFWQKEQGRLENAVDQLQSLTVFTTYSAADHHWYDLHRLMPGYKEDDDDKPTPQ---------QRTQWLIDN 463
BLAST of mRNA_H-elongata_contig69376.14585.1 vs. uniprot
Match: UPI000A2A83DD (uncharacterized protein LOC110235051 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A83DD) HSP 1 Score: 124 bits (311), Expect = 1.150e-28 Identity = 82/213 (38.50%), Postives = 108/213 (50.70%), Query Frame = -1
Query: 87 SFIPADAPGGLSEEDDIRRALQSLKRGSGNS-TTVNYQWAGEPLREDNTPHLATMYFPTLVPTGAGDPFWGARLRKVSLIDTLTHLMKFADMPAEGANEAPCYRFACHRTFAYWCPNIRMRSQAKEQTRVFLNRNSEQVELPM----GQVGEREIQQLVGAATRWTANISGMDGYWLVRGSELE*AVNQLNCPSAFVTYSAADHHWHDMHSLF 710
SF+P G +E +I Q L S TV Q PL E TP LATM FPTL P G GDP A R VSL+D + HL+KFA E N YRFA H F+YW N+ R + EQT +FL +N + L + G + +R+ ANI+G + YW +L+ V + P+ F T+S+AD HW ++HSLF
Sbjct: 162 SFLPI----GEEQEQEIDAVRQQLLGDEPMSWPTVEDQ----PLNEYQTPFLATMAFPTLFPDGKGDPTNQALARDVSLLDRVRHLIKFA----EKVNGKWVYRFASHPRFSYWALNMIQRKRTLEQTGIFLKQNPSESHLTIDELRGMAESNSSAVFMPKVSRYVANIAGTNAYWHKVKEDLKAIVTNVGTPTFFFTFSSADMHWPELHSLF 362
BLAST of mRNA_H-elongata_contig69376.14585.1 vs. uniprot
Match: UPI00109BD642 (uncharacterized protein LOC110247456 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BD642) HSP 1 Score: 123 bits (309), Expect = 1.180e-28 Identity = 77/212 (36.32%), Postives = 109/212 (51.42%), Query Frame = -1
Query: 87 SFIPADAPGGLSEEDDIRRALQSLKRGSGNSTTVNYQWAGEPLREDNTPHLATMYFPTLVPTGAGDPFWGARLRKVSLIDTLTHLMKFADMPAEGANEAPCYRFACHRTFAYWCPNIRMRSQAKEQTRVFLNRNSEQVELPMGQVGE----REIQQLVGAATRWTANISGMDGYWLVRGSELE*AVNQLNCPSAFVTYSAADHHWHDMHSLF 710
SF+P G +E +I Q L SG+ PL E P LATM FPTL P G GDP A R VSL+D + HL+KFA E + YRFA H F+YW N+ R + EQT +FL +N + L + ++ E + + +R+ ANI+G + YW +L+ + + P+ F T+S+AD HW ++HSLF
Sbjct: 72 SFLPY----GQQQEQEINAVRQQL---SGDEPMSWPTVDNRPLNEYQIPFLATMAFPTLFPDGKGDPTNQALTRDVSLLDRVKHLIKFA----EKIDGKWVYRFASHPRFSYWAFNMIQRKRTLEQTGIFLKQNPSEAHLTIYELREMAENNDSTSFLSKVSRYVANIAGTNAYWHKVKEDLKAIITNVGTPTFFFTFSSADMHWPELHSLF 272
BLAST of mRNA_H-elongata_contig69376.14585.1 vs. uniprot
Match: A0A6S7GPZ2_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GPZ2_PARCT) HSP 1 Score: 118 bits (295), Expect = 1.580e-26 Identity = 74/201 (36.82%), Postives = 99/201 (49.25%), Query Frame = -1
Query: 3 GEPLREDNTPHLATMYFPTLVPTGAGDPFWGARLRKVSLIDTLTHLMKFADMPAEGANEAPCYRFACHRTFAYWCPNIRMRSQAKEQTRVFLNRNSEQVELPMGQ----VGEREIQQLVGAATRWTANISGMDGYWLVRGSELE*AVNQLNCPSAFVTYSAADHHWHDMHSLFPIVGDEPSPGDPAAVRDLGERHRSLIDN 593
G + E T LATM FPTL P G GDP AR ++L + HLMKFA+M A+G E +RFA H F YW N++ R Q Q V+L + + M + V Q+V R+ + + G + YW R EL + Q CP+ F T+SAAD HW D+ L D A R ER +++IDN
Sbjct: 298 GNLVDEVKTDGLATMAFPTLFPYGKGDPTNRARQHGITLAEAFKHLMKFAEMLADGKFE---WRFASHPRFPYWALNMKQRHQLLSQANVYLRQYPADANMTMEELKQMVNSMSANQMVNRLQRYVSKVQGTNQYWYQRLQELLALIEQKGCPTFFFTFSAADMHWPDLQRLLQ--------NDEGASR--SERAQAVIDN 485
BLAST of mRNA_H-elongata_contig69376.14585.1 vs. uniprot
Match: UPI00106CA58C (uncharacterized protein LOC114538328 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106CA58C) HSP 1 Score: 115 bits (287), Expect = 4.520e-26 Identity = 71/215 (33.02%), Postives = 105/215 (48.84%), Query Frame = -1
Query: 87 SFIPADAPGGLSEEDDIRRALQSLKRGSGNSTTVNYQWAG---EPLREDNTPHLATMYFPTLVPTGAGDPFWGARLRKVSLIDTLTHLMKFADMPAEGANEAPCYRFACHRTFAYWCPNIRMRSQAKEQTRVFLNRNSEQVELPMGQVGEREIQQ----LVGAATRWTANISGMDGYWLVRGSELE*AVNQLNCPSAFVTYSAADHHWHDMHSLF 710
SF+P G ++ +I L S QW EPL E HLATM FPTL P G GDP LR V L + + HL+KFA++ + YRFA H F YW N+ R + +Q+ +FL +N + L + ++ E + +R+ NI+G + YW EL+ + + P+ F T+S+AD HW ++H+LF
Sbjct: 36 SFLPV----GEQQQQEIEAVRNQL------SENEPMQWPSVENEPLNEYQVSHLATMSFPTLFPDGKGDPTNQGLLRDVPLQERIKHLLKFAEV----IDGKWVYRFANHPRFCYWAFNMIQRKRILQQSGIFLKQNPGEAHLTIDELREMAASNNANLFMSKVSRYVGNIAGTNAYWNKVREELKAIITSVGAPTLFFTFSSADMHWPELHTLF 236
BLAST of mRNA_H-elongata_contig69376.14585.1 vs. uniprot
Match: A0A6S7IAZ0_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7IAZ0_PARCT) HSP 1 Score: 115 bits (288), Expect = 1.300e-25 Identity = 63/177 (35.59%), Postives = 95/177 (53.67%), Query Frame = -1
Query: 72 EPLREDNTPHLATMYFPTLVPTGAGDPFWGARLRKVSLIDTLTHLMKFADMPAEGANEAPCYRFACHRTFAYWCPNIRMRSQAKEQTRVFLNRNSEQVELPMGQVGEREIQQ----LVGAATRWTANISGMDGYWLVRGSELE*AVNQLNCPSAFVTYSAADHHWHDMHSLFPIVGD 590
EP+ E HLATM FPTL P G GDP LR V L + + HL+KFA++ + YRFA H F+YW N+ R + +Q+ +FL +N + L + ++ E + + +R+ NI+G + YW EL+ + + P+ F T+S+AD HW ++HSLF D
Sbjct: 143 EPINEYQISHLATMAFPTLFPDGKGDPTNQGLLRDVPLQERIKHLLKFAEI----IDGKWVYRFANHPRFSYWAFNMIQRKRILQQSGIFLKQNPGEAHLTIDELREMAVSNNASVFMSKVSRYVGNIAGTNAYWNRVREELKAIITSVGAPTLFFTFSSADMHWPELHSLFKTDTD 315
BLAST of mRNA_H-elongata_contig69376.14585.1 vs. uniprot
Match: A0A6S7H9A2_PARCT (Helitron_like_N domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7H9A2_PARCT) HSP 1 Score: 114 bits (286), Expect = 2.100e-25 Identity = 66/200 (33.00%), Postives = 104/200 (52.00%), Query Frame = -1
Query: 3 EPLREDNTPHLATMYFPTLVPTGAGDPFWGARLRKVSLIDTLTHLMKFADMPAEGANEAPCYRFACHRTFAYWCPNIRMRSQAKEQTRVFLNRNSEQVELPMGQVGER----EIQQLVGAATRWTANISGMDGYWLVRGSELE*AVNQLNCPSAFVTYSAADHHWHDMHSLFPIVGDEPSPGDPAAVRDLGERHRSLIDN 590
+PL E TP LAT+ FPTL P G GDP R + + + HL+K++ E N+ YRFA H F+YW N+ R +A +Q +FL +N ++ L + ++ E + + +R+ ANI+G YW +L+ + P+ F T+S+AD HW ++HSLF D S + +R +++IDN
Sbjct: 414 QPLNEYTTPFLATLAFPTLFPDGNGDPTNPCLQRDIPFANRIQHLIKYS----EKINDKWIYRFAGHPRFSYWALNMIQRKRALQQNAIFLKQNPDESHLTIDELREMACSDKSSSFMSKLSRYVANITGSSAYWYKIREDLKAIILAKGAPTIFFTFSSADLHWPELHSLFSSNVDSLS---------VEDRRKNVIDN 600
BLAST of mRNA_H-elongata_contig69376.14585.1 vs. uniprot
Match: A0A6S7ILW5_PARCT (Helitron_like_N domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7ILW5_PARCT) HSP 1 Score: 109 bits (272), Expect = 9.580e-24 Identity = 64/181 (35.36%), Postives = 94/181 (51.93%), Query Frame = -1
Query: 63 EPLREDNTPHLATMYFPTLVPTGAGDPFWGARLRKVSLIDTLTHLMKFADMPAEGANEAP-CYRFACHRTFAYWCPNIRMRSQAKEQTRVFLNRNSEQVELPMGQVGEREIQQ----LVGAATRWTANISGMDGYWLVRGSELE*AVNQLNCPSAFVTYSAADHHWHDMHSLFPIVGDEPS 590
+PL E T +LATM FPTL P GDP A V L + + HLMKFA+ N+ YRF+ H F YW N+ R + +QT +FL +N + L + ++ E+ + +R ANI+G + YW +L+ + + P+ F T+S+AD HW ++HSLF D S
Sbjct: 321 QPLNEYQTQYLATMAFPTLFPDVKGDPTNQALQGNVPLPERIKHLMKFAEK-----NDGKWLYRFSSHPRFCYWAFNMIQRMRTLQQTGIFLKQNPGEAHLTIDELREKAASDNSAAFISKMSRHVANIAGSNAYWHRVKEDLKAIITNVGTPTLFFTFSSADMHWPELHSLFGENSDNSS 496
BLAST of mRNA_H-elongata_contig69376.14585.1 vs. uniprot
Match: UPI00109BC70A (uncharacterized protein LOC110236158 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BC70A) HSP 1 Score: 110 bits (274), Expect = 9.850e-24 Identity = 67/199 (33.67%), Postives = 100/199 (50.25%), Query Frame = -1
Query: 3 PLREDNTPHLATMYFPTLVPTGAGDPFWGARLRKVSLIDTLTHLMKFADMPAEGANEAPCYRFACHRTFAYWCPNIRMRSQAKEQTRVFLNRNSEQVELPMGQVGEREIQQ----LVGAATRWTANISGMDGYWLVRGSELE*AVNQLNCPSAFVTYSAADHHWHDMHSLFPIVGDEPSPGDPAAVRDLGERHRSLIDN 587
P+ E T LATM FPTL P G GDP LR + L + HL+KFA E N YRFA H F+YW N+ R +A +Q+ +FL +N + L + ++ E + +R+ N++G YW +L+ ++ P+ F T+SAAD HW ++HSLF + + D R +++IDN
Sbjct: 548 PVNEFTTHFLATMAFPTLFPDGKGDPTNPCLLRDIPLGNKFQHLIKFA----ENVNGKWIYRFASHPRFSYWALNMIQRQRALQQSSIFLKQNPGESHLTIDELREMANNNTSSGFMSKLSRYIGNVTGSAAYWHRVREDLKAIIDSKGVPTIFFTFSAADMHWPELHSLFHSTLSDLNNND---------RRQAIIDN 733
BLAST of mRNA_H-elongata_contig69376.14585.1 vs. uniprot
Match: UPI000A2A5AE8 (uncharacterized protein LOC110244675 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A5AE8) HSP 1 Score: 103 bits (256), Expect = 8.880e-22 Identity = 61/167 (36.53%), Postives = 89/167 (53.29%), Query Frame = -1
Query: 63 MYFPTLVPTGAGDPFWGARLRKVSLIDTLTHLMKFADMPAEGANEAPCYRFACHRTFAYWCPNIRMRSQAKEQTRVFLNRNSEQVELPMGQVGE----REIQQLVGAATRWTANISGMDGYWLVRGSELE*AVNQLNCPSAFVTYSAADHHWHDMHSLFPIVGDEPS 551
M FPTL P G GDP A R V L + HL+KFA E ++ YRFA H F+YW N+ RS+ +Q+ +FL +N + L + ++ E + +R+ ANI+G YW +L+ ++ P+ F T+S+AD HW D+HSLF D+PS
Sbjct: 1 MAFPTLFPDGKGDPTNPAIKRDVPLSGKIQHLIKFA----EYFDDKWVYRFANHPRFSYWALNMIQRSRTLQQSNIFLKQNPGESHLTIDELNEMAKSNSSSVFMSKISRYLANITGSSAYWYKVXEDLKAIISYKEAPTIFFTFSSADMHWPDLHSLFH---DDPS 160 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69376.14585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig69376.14585.1 >prot_H-elongata_contig69376.14585.1 ID=prot_H-elongata_contig69376.14585.1|Name=mRNA_H-elongata_contig69376.14585.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=214bp MPVVVCGGVGDESGGAIELINGLFQFAPPHQPVTVHAGNVRCPSRRRSNEback to top mRNA from alignment at H-elongata_contig69376:1805..2550+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig69376.14585.1 ID=mRNA_H-elongata_contig69376.14585.1|Name=mRNA_H-elongata_contig69376.14585.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=746bp|location=Sequence derived from alignment at H-elongata_contig69376:1805..2550+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig69376:1805..2550+ >mRNA_H-elongata_contig69376.14585.1 ID=mRNA_H-elongata_contig69376.14585.1|Name=mRNA_H-elongata_contig69376.14585.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1284bp|location=Sequence derived from alignment at H-elongata_contig69376:1805..2550+ (Himanthalia elongata Himel1 dioecious)back to top |