mRNA_H-elongata_contig69267.14574.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69267.14574.1
Unique NamemRNA_H-elongata_contig69267.14574.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig69267.14574.1 vs. uniprot
Match: D8LC93_ECTSI (CCHC-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC93_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 1.910e-35
Identity = 64/71 (90.14%), Postives = 68/71 (95.77%), Query Frame = 1 
Query:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIKYDPYAAEGGAADADDEENAFEQAQGLMAVAKLSNKGVS 213
            MPATAGRVRMPHGNRVSSSSALKMTGIWTNTI YDPYAAEGG ADA+DE NAFEQAQGLMA+AKLSN+GV+
Sbjct:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAAEGGGADAEDEANAFEQAQGLMALAKLSNQGVT 71
[Close]
BLAST of mRNA_H-elongata_contig69267.14574.1 vs. uniprot
Match: A0A835YWX5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWX5_9STRA)

HSP 1 Score: 117 bits (294), Expect = 2.630e-31
Identity = 62/74 (83.78%), Postives = 66/74 (89.19%), Query Frame = 1 
Query:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIKYDPYAAEGG---AADADDEENAFEQAQGLMAVAKLSNKGVS 213
            MPATAGRVRMPH NRVSSSSALKMTGIWTNTI YDPYAAEGG   AA A D ENA+EQAQGLMA+AKLSN+GV+
Sbjct:    1 MPATAGRVRMPHNNRVSSSSALKMTGIWTNTIGYDPYAAEGGEAAAAAAADAENAYEQAQGLMALAKLSNEGVT 74
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BLAST of mRNA_H-elongata_contig69267.14574.1 vs. uniprot
Match: A0A2D4C9D1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C9D1_PYTIN)

HSP 1 Score: 100 bits (248), Expect = 1.140e-25
Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 1 
Query:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIKYDPYAAEGGAADADDEENAFEQAQGLMAVAKLSNKGVSLDSAVK 231
            MPATAGRVRMPH NR+ SS+ALKMTGIW NTI YDPYAAEG        ++++EQA+GLMA+AKLSN+G  +  A K
Sbjct:    1 MPATAGRVRMPHNNRMHSSAALKMTGIWKNTIGYDPYAAEGEEQQGQVSQSSYEQAKGLMALAKLSNQGNEVRGACK 77
[Close]
BLAST of mRNA_H-elongata_contig69267.14574.1 vs. uniprot
Match: A0A421EW16_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421EW16_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 9.970e-25
Identity = 51/77 (66.23%), Postives = 59/77 (76.62%), Query Frame = 1 
Query:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIKYDPYAAEGGAADADDEENAFEQAQGLMAVAKLSNKGVSLDSAVK 231
            MPATAGRVRMPH NR+ SS+ALKMTGIW +TI YDPYAAEG   +    E+++EQAQGLMA+AKLSNK      A K
Sbjct:    1 MPATAGRVRMPHNNRMHSSAALKMTGIWKDTIGYDPYAAEGEKQEKS--ESSYEQAQGLMALAKLSNKSNDTRGACK 75
[Close]
BLAST of mRNA_H-elongata_contig69267.14574.1 vs. uniprot
Match: A0A3F2RFL8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RFL8_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 4.140e-24
Identity = 51/77 (66.23%), Postives = 59/77 (76.62%), Query Frame = 1 
Query:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIKYDPYAAEGGAADADDEENAFEQAQGLMAVAKLSNKGVSLDSAVK 231
            MPATAGRVRMPH NR+ SS+ALKMTGIW +TI YDPYAAEG   +    E+++EQAQGLMA+AKLSNK      A K
Sbjct:    1 MPATAGRVRMPHNNRMHSSAALKMTGIWKDTIGYDPYAAEGEKQEKS--ESSYEQAQGLMALAKLSNKSNDTRGACK 75
[Close]
BLAST of mRNA_H-elongata_contig69267.14574.1 vs. uniprot
Match: A0A2P4YHG3_9STRA (Zinc ion binding protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YHG3_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 9.540e-24
Identity = 50/77 (64.94%), Postives = 59/77 (76.62%), Query Frame = 1 
Query:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIKYDPYAAEGGAADADDEENAFEQAQGLMAVAKLSNKGVSLDSAVK 231
            MPATAGRVRMPH NR+ SS+ALKMTGIW +TI YDPYAAEG   +    E ++EQA+GLMA+AKLSNK   +  A K
Sbjct:    1 MPATAGRVRMPHNNRMHSSAALKMTGIWKDTIGYDPYAAEGEKKETS--ETSYEQAKGLMALAKLSNKSNDVRGACK 75
[Close]
BLAST of mRNA_H-elongata_contig69267.14574.1 vs. uniprot
Match: A0A8K1FHX2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHX2_PYTOL)

HSP 1 Score: 97.8 bits (242), Expect = 3.290e-23
Identity = 51/77 (66.23%), Postives = 61/77 (79.22%), Query Frame = 1 
Query:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIKYDPYAAEGGAADADDEENAFEQAQGLMAVAKLSNKGVSLDSAVK 231
            MPA+AGRVRMPH NR+ SS+ALKMTGIWTNTI YDPYAAEG     +  ++++EQAQGLMA+AKLSNK   +  A K
Sbjct:    1 MPASAGRVRMPHNNRMHSSAALKMTGIWTNTIGYDPYAAEG-EEKKEVSQSSYEQAQGLMALAKLSNKSNDVRGACK 76
[Close]
BLAST of mRNA_H-elongata_contig69267.14574.1 vs. uniprot
Match: A0A329RX20_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RX20_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.100e-22
Identity = 50/77 (64.94%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIKYDPYAAEGGAADADDEENAFEQAQGLMAVAKLSNKGVSLDSAVK 231
            MPATAGRVRMPH NR+ SS+ LKMTGIW NTI YDPYAAEG     +  E ++EQA+GLMA+AKLSNK   +  A K
Sbjct:    1 MPATAGRVRMPHNNRMHSSATLKMTGIWKNTIGYDPYAAEG-EQQGETSETSYEQAKGLMALAKLSNKSSDVRGACK 76
[Close]
BLAST of mRNA_H-elongata_contig69267.14574.1 vs. uniprot
Match: A0A6A3SK00_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SK00_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.250e-22
Identity = 51/77 (66.23%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIKYDPYAAEGGAADADDEENAFEQAQGLMAVAKLSNKGVSLDSAVK 231
            MPATAGRVRMPH NR+ SS+ALKMTGIW NTI YDPYAAE    +  D   +FEQA+GLMA+AKLSNK   +  A K
Sbjct:    1 MPATAGRVRMPHNNRMHSSAALKMTGIWKNTIGYDPYAAEDEKQETSD--TSFEQAKGLMALAKLSNKSNDVRGACK 75
[Close]
BLAST of mRNA_H-elongata_contig69267.14574.1 vs. uniprot
Match: A0A0W8C9S2_PHYNI (CAX-interacting protein 4 n=17 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C9S2_PHYNI)

HSP 1 Score: 96.3 bits (238), Expect = 1.410e-22
Identity = 50/77 (64.94%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIKYDPYAAEGGAADADDEENAFEQAQGLMAVAKLSNKGVSLDSAVK 231
            MPATAGRVRMPH NR+ SS+ LKMTGIW NTI YDPYAAEG     +  E ++EQA+GLMA+AKLSNK   +  A K
Sbjct:    1 MPATAGRVRMPHNNRMHSSATLKMTGIWXNTIGYDPYAAEG-EKQGETSETSYEQAKGLMALAKLSNKSNDVRGACK 76
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69267.14574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC93_ECTSI1.910e-3590.14CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YWX5_9STRA2.630e-3183.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2D4C9D1_PYTIN1.140e-2564.94Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A421EW16_9STRA9.970e-2566.23Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A3F2RFL8_9STRA4.140e-2466.23Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A2P4YHG3_9STRA9.540e-2464.94Zinc ion binding protein n=1 Tax=Phytophthora palm... [more]
A0A8K1FHX2_PYTOL3.290e-2366.23Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A329RX20_9STRA1.100e-2264.94Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A6A3SK00_9STRA1.250e-2266.23Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A0W8C9S2_PHYNI1.410e-2264.94CAX-interacting protein 4 n=17 Tax=Phytophthora Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69267contigH-elongata_contig69267:2648..2878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.1
Seed ortholog evalue1.1e-28
Seed eggNOG ortholog2880.D8LC93
Preferred nameSREK1IP1
KEGG koko:K11493
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
EggNOG free text desc.zinc ion binding
EggNOG OGsKOG2985@1,KOG2985@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-14_005630.1
Exons1
Model size231
Cds size231
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931089.8543723-CDS-H-elongata_contig69267:2647..28781622931089.8543723-CDS-H-elongata_contig69267:2647..2878Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69267 2648..2878 -
1691679693.665917-CDS-H-elongata_contig69267:2647..28781691679693.665917-CDS-H-elongata_contig69267:2647..2878Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69267 2648..2878 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69267.14574.1prot_H-elongata_contig69267.14574.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69267 2648..2878 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69267.14574.1

>prot_H-elongata_contig69267.14574.1 ID=prot_H-elongata_contig69267.14574.1|Name=mRNA_H-elongata_contig69267.14574.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIKYDPYAAEGGAADADDEE
NAFEQAQGLMAVAKLSNKGVSLDSAVK
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mRNA from alignment at H-elongata_contig69267:2648..2878-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69267.14574.1 ID=mRNA_H-elongata_contig69267.14574.1|Name=mRNA_H-elongata_contig69267.14574.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig69267:2648..2878- (Himanthalia elongata Himel1 dioecious)
ATGCCAGCCACTGCGGGTAGAGTGCGTATGCCGCATGGCAACCGGGTTAG
CAGCAGTTCCGCGCTCAAAATGACGGGCATCTGGACGAACACGATCAAGT
ACGACCCGTACGCTGCCGAGGGGGGGGCGGCTGATGCGGACGACGAGGAA
AATGCTTTCGAACAAGCCCAGGGTCTCATGGCAGTGGCAAAGCTTTCGAA
TAAGGGGGTAAGTTTGGATAGTGCTGTAAAA
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Coding sequence (CDS) from alignment at H-elongata_contig69267:2648..2878-

>mRNA_H-elongata_contig69267.14574.1 ID=mRNA_H-elongata_contig69267.14574.1|Name=mRNA_H-elongata_contig69267.14574.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig69267:2648..2878- (Himanthalia elongata Himel1 dioecious)
ATGCCAGCCACTGCGGGTAGAGTGCGTATGCCGCATGGCAACCGGGTTAG
CAGCAGTTCCGCGCTCAAAATGACGGGCATCTGGACGAACACGATCAAGT
ACGACCCGTACGCTGCCGAGGGGGGGGCGGCTGATGCGGACGACGAGGAA
AATGCTTTCGAACAAGCCCAGGGTCTCATGGCAGTGGCAAAGCTTTCGAA
TAAGGGGGTAAGTTTGGATAGTGCTGTAAAAATGCCAGCCACTGCGGGTA
GAGTGCGTATGCCGCATGGCAACCGGGTTAGCAGCAGTTCCGCGCTCAAA
ATGACGGGCATCTGGACGAACACGATCAAGTACGACCCGTACGCTGCCGA
GGGGGGGGCGGCTGATGCGGACGACGAGGAAAATGCTTTCGAACAAGCCC
AGGGTCTCATGGCAGTGGCAAAGCTTTCGAATAAGGGGGTAAGTTTGGAT
AGTGCTGTAAAA
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