mRNA_H-elongata_contig69230.14572.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69230.14572.1
Unique NamemRNA_H-elongata_contig69230.14572.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig69230.14572.1 vs. uniprot
Match: D7G3R5_ECTSI (INCENP_ARK-bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3R5_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 9.770e-43
Identity = 67/79 (84.81%), Postives = 72/79 (91.14%), Query Frame = 1
Query:   10 VPEWAKPDAVAAALERQYGGVKPINPSTIFVDFYTCSLEKIFDTKKKKWERKSTGDWMTDRLTIAEKLAYDRAMGYVTI 246
            VPEWA  + +AAALERQYGG KPINP+ IFVDFYTCSLE IFDT KKKW+RKSTGDWM+DRLTIAEKLAYDRAMGYVTI
Sbjct:   42 VPEWATNEGIAAALERQYGGDKPINPNKIFVDFYTCSLETIFDTNKKKWDRKSTGDWMSDRLTIAEKLAYDRAMGYVTI 120          
BLAST of mRNA_H-elongata_contig69230.14572.1 vs. uniprot
Match: D8LQB1_ECTSI (INCENP_ARK-bind domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB1_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 5.610e-27
Identity = 47/76 (61.84%), Postives = 63/76 (82.89%), Query Frame = 1
Query:   10 VPEWAKPDAVAAALERQYGGVKPINPSTIFVDFYTCSLEKIFDTKKKKWERKSTGDWMTDRLTIAEKLAYDRAMGY 237
            +P+WA+  A+A  L++QYGG  P+NP  IF +F+TC+LE IF+TKK+KW+R S+G+W TDRLTIAEKLAY RAMG+
Sbjct:  553 IPDWARGKALAKILDKQYGGPNPLNPDKIFPEFFTCNLEHIFNTKKQKWDRSSSGNWHTDRLTIAEKLAYQRAMGF 628          
BLAST of mRNA_H-elongata_contig69230.14572.1 vs. uniprot
Match: A0A6H5L3Q6_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Q6_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 6.200e-27
Identity = 47/76 (61.84%), Postives = 63/76 (82.89%), Query Frame = 1
Query:   10 VPEWAKPDAVAAALERQYGGVKPINPSTIFVDFYTCSLEKIFDTKKKKWERKSTGDWMTDRLTIAEKLAYDRAMGY 237
            +P+WA+  A+A  L++QYGG  P+NP  IF +F+TC+LE IF+TKK+KW+R S+G+W TDRLTIAEKLAY RAMG+
Sbjct:  968 IPDWARGKALAKILDKQYGGPNPLNPDKIFPEFFTCNLEHIFNTKKQKWDRSSSGNWHTDRLTIAEKLAYQRAMGF 1043          
BLAST of mRNA_H-elongata_contig69230.14572.1 vs. uniprot
Match: A0A835ZCU2_9STRA (SAP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCU2_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.460e-18
Identity = 38/70 (54.29%), Postives = 54/70 (77.14%), Query Frame = 1
Query:   10 VPEWAKPDAVAAALERQYGGVKPINPSTIFVDFYTCSLEKIFDTKKKKW-ERKSTGDWMTDRLTIAEKLA 216
            +P WA+   + AALERQ+GG  PINP TIF +F+TC L+ IFDT+KK++  R S+G+W+ D+LT+ E+LA
Sbjct:  460 IPAWARGKQLEAALERQFGGSAPINPDTIFAEFFTCDLQHIFDTRKKRYVTRSSSGNWLQDKLTLPERLA 529          
BLAST of mRNA_H-elongata_contig69230.14572.1 vs. uniprot
Match: A0A024U7N0_9STRA (INCENP_ARK-bind domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U7N0_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 6.670e-13
Identity = 39/84 (46.43%), Postives = 59/84 (70.24%), Query Frame = 1
Query:    7 EVPEWAKPDAVAAALERQYGGVKPINPS-TIFVDFY-TCSLEKIFD----TKKKKWERK-STGDWMTDRLTIAEKLAYDRAMGY 237
            ++P WA+ DA+  AL RQ+G    I+P+ TIF DF  TC LE IF     +KKK+++++ S+G+W+ DR T+ +K+AY RAMG+
Sbjct:   85 KIPSWAQRDALEQALARQFGP-SAIDPTPTIFPDFVDTCDLEAIFQPADASKKKRFQKRTSSGNWLADRPTMRDKVAYKRAMGF 167          
BLAST of mRNA_H-elongata_contig69230.14572.1 vs. uniprot
Match: A0A6G0X277_9STRA (SAP domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X277_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 4.690e-12
Identity = 41/85 (48.24%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    7 EVPEWAKPDAVAAALERQYGGVKPINPS-TIFVDFY-TCSLEKIF---DTKKKKW--ERKSTGDWMTDRLTIAEKLAYDRAMGYV 240
            ++P WA+ DA+  AL RQ+G  + I+P+ +IF DF  TC LE IF   D+KKKK   +R S+G+W+ D+ TI EK+AY R MG++
Sbjct: 1072 KIPNWAQRDALEDALARQFGP-RAIDPTPSIFPDFVDTCDLEAIFQPVDSKKKKRFNKRTSSGNWLADKPTIREKVAYKRDMGFI 1155          
BLAST of mRNA_H-elongata_contig69230.14572.1 vs. uniprot
Match: A0A7S2USU5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2USU5_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.980e-11
Identity = 33/80 (41.25%), Postives = 49/80 (61.25%), Query Frame = 1
Query:    7 EVPEWAKPDAVAAALERQYG-GVKPINPSTIFVDFYTCSLEKIFDTKKKKW--ERKSTGDWMTDRLTIAEKLAYDRAMGY 237
            ++P WA+   +  AL++Q+   V   +P  +F +  TC L  IF   +K+   ERKSTG+W  D++T+AEKL Y R MGY
Sbjct:  536 KIPAWAQRTNLLKALQKQFDPSVNRYDPDVLFSEVQTCDLTAIFGPSEKRQYRERKSTGNWTNDQVTVAEKLTYKRKMGY 615          
BLAST of mRNA_H-elongata_contig69230.14572.1 vs. uniprot
Match: A0A1V9ZQT1_9STRA (INCENP_ARK-bind domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZQT1_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 7.210e-11
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 1
Query:   10 VPEWAKPDAVAAALERQYGGVKPINPSTIFVDFY-TCSLEKIFD----TKKKKWERK-STGDWMTDRLTIAEKLAYDRAMGYVT 243
            VPEWA+ + +  AL RQ+G        +IF +F  TC LE IF      KKKK+ R+ S+G+W+ DR T  EK+AY +AMGY +
Sbjct:  327 VPEWAQKENLEKALARQFGPHAMDPTPSIFPEFIATCDLEAIFKPKDGAKKKKFARRTSSGNWLADRPTTREKIAYKKAMGYTS 410          
BLAST of mRNA_H-elongata_contig69230.14572.1 vs. uniprot
Match: A0A485LMU5_9STRA (Aste57867_23167 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LMU5_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.060e-10
Identity = 38/85 (44.71%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    7 EVPEWAKPDAVAAALERQYGGVKPINPS-TIFVDFY-TCSLEKIF---DTKKKKW--ERKSTGDWMTDRLTIAEKLAYDRAMGYV 240
            ++P+WA+ +A+  AL RQ+G  + ++P+ +IF DF  +C LE IF   D KKKK   +R S+G+W+ DR T+ EK+AY R MG++
Sbjct: 1086 KIPDWAQREALDRALARQFGP-EAVDPTPSIFPDFVDSCDLEAIFQPVDPKKKKRFNKRTSSGNWLADRPTMREKVAYKRDMGFI 1169          
BLAST of mRNA_H-elongata_contig69230.14572.1 vs. uniprot
Match: A0A7S3Y2K4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2K4_HETAK)

HSP 1 Score: 62.8 bits (151), Expect = 5.800e-10
Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 1
Query:   10 VPEWAKPDAVAAALERQYGGVKPINPSTIFVDFYTCSLEKIFDT----KKKKWE-RKSTGDWMTDRLTIAEKLAYDRAMGYVT 243
            +P WA+   +   L RQ+  +  ++P +IF +  TC LE IF      KK K++ RKS+G+W  D+LT+ EK+ Y RAMG+ T
Sbjct:  154 IPSWARGAELKEQLCRQFTDL--VDPDSIFPEVSTCVLEDIFQEAAPKKKAKYKARKSSGNWQRDKLTLVEKMDYQRAMGFST 234          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69230.14572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7G3R5_ECTSI9.770e-4384.81INCENP_ARK-bind domain-containing protein n=2 Tax=... [more]
D8LQB1_ECTSI5.610e-2761.84INCENP_ARK-bind domain-containing protein n=1 Tax=... [more]
A0A6H5L3Q6_9PHAE6.200e-2761.84SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZCU2_9STRA1.460e-1854.29SAP domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A024U7N0_9STRA6.670e-1346.43INCENP_ARK-bind domain-containing protein n=1 Tax=... [more]
A0A6G0X277_9STRA4.690e-1248.24SAP domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A7S2USU5_9STRA2.980e-1141.25Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A1V9ZQT1_9STRA7.210e-1145.24INCENP_ARK-bind domain-containing protein n=1 Tax=... [more]
A0A485LMU5_9STRA1.060e-1044.71Aste57867_23167 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S3Y2K4_HETAK5.800e-1040.96Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69230contigH-elongata_contig69230:261..1080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue2.1e-22
Seed eggNOG ortholog2880.D8LQB1
EggNOG free text desc.Inner centromere protein, ARK binding region
EggNOG OGs29Q2T@1,2RX7J@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931089.6492286-CDS-H-elongata_contig69230:260..4301622931089.6492286-CDS-H-elongata_contig69230:260..430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69230 261..430 +
1691679693.6025274-CDS-H-elongata_contig69230:260..4301691679693.6025274-CDS-H-elongata_contig69230:260..430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69230 261..430 +
1622931089.6666787-CDS-H-elongata_contig69230:1004..10801622931089.6666787-CDS-H-elongata_contig69230:1004..1080Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69230 1005..1080 +
1691679693.612073-CDS-H-elongata_contig69230:1004..10801691679693.612073-CDS-H-elongata_contig69230:1004..1080Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69230 1005..1080 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69230.14572.1prot_H-elongata_contig69230.14572.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69230 261..1080 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69230.14572.1

>prot_H-elongata_contig69230.14572.1 ID=prot_H-elongata_contig69230.14572.1|Name=mRNA_H-elongata_contig69230.14572.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
SAEVPEWAKPDAVAAALERQYGGVKPINPSTIFVDFYTCSLEKIFDTKKK
KWERKSTGDWMTDRLTIAEKLAYDRAMGYVTI
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mRNA from alignment at H-elongata_contig69230:261..1080+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69230.14572.1 ID=mRNA_H-elongata_contig69230.14572.1|Name=mRNA_H-elongata_contig69230.14572.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=820bp|location=Sequence derived from alignment at H-elongata_contig69230:261..1080+ (Himanthalia elongata Himel1 dioecious)
AGTGCTGAGGTGCCGGAGTGGGCCAAGCCGGACGCCGTGGCTGCCGCACT GGAGCGGCAGTACGGCGGGGTCAAACCTATCAATCCCAGCACGATCTTCG TAGACTTCTACACCTGCAGCCTCGAGAAGATATTCGACACTAAGAAGAAG AAGTGGGAGAGAAAGAGCACGTGCGTTGCGTTCCTTAGTCGTCCGCCATA CTGCTCAAAATGACGTGTTTTGTTTTGCAAAAGCGCACCGAGAAGAGCCC TTCTCTGGGGAGAATTCCCCTTTCGCTACTTCCTACCTGTACCGCCCCCG AGTGCACACCAGTGCTGTGCTGCTATACTGTAAAACATACTCAATATTTG GTGGAGACCTGTTGTGCAACGCAGCGAGCTGTTCGTTTTTTTTTGTGGAG ACTTTCATTACCACCATGTACCACGCACATTGATTGATTGATTGATTGAT TGATTGATTGATTGATTGAAGAGAAAAGAGAAGCGTACCACCTGTAAGCG TATTTGATGCATTGTTTTGGTTCTTAGTTGGGTTCGTCAAGAGGCACATG GTGTCTGTTGATTCACGAGTTGCGATGCGAGTCCCTCTCTTTTTTACACG GTTGGGCAGTTTTGGAAATTTCCGTGACACTGCCTGCATCATGGATGGCA ACAACGGACGACGCCGTCACTCCTTTTTATAGAAACATCCTTCCCCTGCC CTTAATCCCTTTCCATATGGCTGCCCTTAATTCCCTTTGGACAGGGGCGA CTGGATGACGGATAGGCTCACGATCGCCGAAAAATTGGCGTACGATCGCG CGATGGGTTACGTGACTATT
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Coding sequence (CDS) from alignment at H-elongata_contig69230:261..1080+

>mRNA_H-elongata_contig69230.14572.1 ID=mRNA_H-elongata_contig69230.14572.1|Name=mRNA_H-elongata_contig69230.14572.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig69230:261..1080+ (Himanthalia elongata Himel1 dioecious)
AGTGCTGAGGTGCCGGAGTGGGCCAAGCCGGACGCCGTGGCTGCCGCACT
GGAGCGGCAGTACGGCGGGGTCAAACCTATCAATCCCAGCACGATCTTCG
TAGACTTCTACACCTGCAGCCTCGAGAAGATATTCGACACTAAGAAGAAG
AAGTGGGAGAGAAAGAGCACAGTGCTGAGGTGCCGGAGTGGGCCAAGCCG
GACGCCGTGGCTGCCGCACTGGAGCGGCAGTACGGCGGGGTCAAACCTAT
CAATCCCAGCACGATCTTCGTAGACTTCTACACCTGCAGCCTCGAGAAGA
TATTCGACACTAAGAAGAAGAAGTGGGAGAGAAAGAGCACGGGCGACTGG
ATGACGGATAGGCTCACGATCGCCGAAAAATTGGCGTACGATCGCGCGAT
GGGTTACGTGACTATTGGGCGACTGGATGACGGATAGGCTCACGATCGCC
GAAAAATTGGCGTACGATCGCGCGATGGGTTACGTGACTATT
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