mRNA_H-elongata_contig6916.14563.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig6916.14563.1 vs. uniprot
Match: D7G2L8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2L8_ECTSI) HSP 1 Score: 211 bits (538), Expect = 3.280e-64 Identity = 121/207 (58.45%), Postives = 145/207 (70.05%), Query Frame = 1
Query: 10 PRRLMVVKCAYIAFCACFGTLARLYTDDIRP-SNTALQGSFLSNSIGSFALGVLEASDLNEDRLGGLYTGLTVGLCGSYTTFSGWNLRIGRVALGNTQG-PTGGIVAAVSIVQTLAFFGVCYVAGQDLVKTLAENGRG----RWRAG---ARGDRDTTVWGAVAGVISVYVLLAILMYVDDNRTRRIHWVASMFAPLGALLRYYLSR 603
P R MV KCAYI+FCACFGTLARLYTDDI P SN ALQGSFL+NSIGSFALG L +S E +Y GLTVG CGSYTT+SGWNLRI R ALG G P+G IV VS+ +LAFF C+ AG D++K +A +GR R G A GD D V + + +VYVLLA+L+ VD+N +RRI W+A +FAP GAL R++LSR
Sbjct: 64 PGRPMVAKCAYISFCACFGTLARLYTDDIGPASNVALQGSFLANSIGSFALGALASSPDRETIPDAMYAGLTVGFCGSYTTYSGWNLRIARAALGQVSGAPSGAIVTIVSMATSLAFFAACFSAGCDVMKQIASHGRRLNIRRMLGGGALAGGDSDA-VRNTLGMLGAVYVLLAVLLGVDNNWSRRIDWLACIFAPFGALSRFFLSR 269
BLAST of mRNA_H-elongata_contig6916.14563.1 vs. uniprot
Match: F6XSK1_CIOIN (Fluoride export protein 2 n=2 Tax=Ciona intestinalis TaxID=7719 RepID=F6XSK1_CIOIN) HSP 1 Score: 96.7 bits (239), Expect = 4.630e-20 Identity = 72/210 (34.29%), Postives = 103/210 (49.05%), Query Frame = 1
Query: 7 PPRRLMVVKCAYIAFCACFGTLARLYTDDI-------RPSNTALQGSFLSNSIGSFALGVLEASDLNEDRLGGLYTGLTVGLCGSYTTFSGWNLRIGRVALGNTQGPTGGIVAAVSIVQTL----AFFGVCYVAGQDLVKTLAENGRGRWRAGARGDRDTTVWGAVAGVISVYVLLAILMYVDDNRTRRIHWVASMFAPLGALLRYYLSR 603
PP+ + + A+ A C C L R+ TD I S + SF+SN +GSF LG L AS + RLG +Y GLT G CGSYTT+S WN ++ +G T T +SIV +F G Y G D K + GR + G + + + AV + S + + VD +T + W+A +FAP GA +R YL++
Sbjct: 97 PPQWQLYMHIAFFAMCGC---LCRIGTDKIFGTLAVIENSGEVVNLSFISNMVGSFVLGALNASPMGSTRLGAMYKGLTTGFCGSYTTWSKWNQQLSLALVGETN--TVSQSQVLSIVSWFIGFHSFIG-SYCVGLDFGKDVG--GRIGKKVSPNGPKISNIAVAVL-LFSAAAGFIVGVIVDPTQTGKSIWMAVLFAPFGACIRAYLAK 297
BLAST of mRNA_H-elongata_contig6916.14563.1 vs. uniprot
Match: H2Y779_CIOSA (Uncharacterized protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2Y779_CIOSA) HSP 1 Score: 89.4 bits (220), Expect = 4.290e-18 Identity = 65/196 (33.16%), Postives = 94/196 (47.96%), Query Frame = 1
Query: 64 GTLARLYTDDI-------RPSNTALQGSFLSNSIGSFALGVLEASDLNEDRLGGLYTGLTVGLCGSYTTFSGWNLRIGRVALGNTQGPTGGIVAAVS--IVQTLAFFGVCYVAGQDLVKTLAENGRGRWRAGARGDRDTTVWGAVAGVISVYVLLA-------ILMYVDDNRTRRIHWVASMFAPLGALLRYYLSR 603
G L R+ TD I S + SF+SN +GSF LG L AS + RLG +Y GLT G CGSYTT+S WN ++ +G + V ++ V +F G Y G D K + G R + + G I+V++LL + + VD +T + W+A +FAP GA +R YL++
Sbjct: 3 GCLCRIGTDQIFGKLAKIESSAAVVNLSFVSNMVGSFVLGALNASPMGSTRLGAMYKGLTTGFCGSYTTWSKWNQQLSLTLVGGANAASQSQVLSILSWFVGFHSFIG-SYCVGLDFGKDI----------GGRIGKKVSPNGPKISNIAVFLLLVGAVIGFIVGVVVDPTQTGKQIWMAVLFAPFGASIRAYLAK 187
BLAST of mRNA_H-elongata_contig6916.14563.1 vs. uniprot
Match: A0A836C7N9_9STRA (CrcB-like protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7N9_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 2.710e-14 Identity = 71/215 (33.02%), Postives = 104/215 (48.37%), Query Frame = 1
Query: 4 QPPRRLMVVKCAYIAFCACFGTLARLYTD--------DIRPSNTALQGSFLSNSIGSFALGVLEASDLNEDRLGG---LYTGLTVGLCGSYTTFSGWNLRIGRVALGNTQG-PTGGIVAAVSIVQTLAFFGVCYVAGQDLVKTLAENGRGRWRAGARGDRDTTVWGAVAGVISVYVL--LAILMYVDDNR-TRRIHWVASMFAPLGALLRYYLSR 603
QP +V +A A G AR++T+ D+ ++T L SF N GS LG L A+ + GG L TG++VGLCG+YTTFS W L+ + + T P I A I ++A F V + G D+ L G + A G + + V GV+ V L+I + V+DN + +W++ +FA GA LRY L+R
Sbjct: 89 QPQEPSVVNLYVSVALWAIAGCYARIFTERLFGSTAADVIDADTLLVPSFFDNVAGSMILGFLVAASTTMSKGGGALVLLTGMSVGLCGAYTTFSAWTLQTNALLIAPTSDVPQPQIAALCYIFASIATFIVAHRVGADVGALLT----GAVQKAAPGISEGII-AIVNGVLLVATAIGLSIALGVNDNSWLEKRYWLSGLFAIPGASLRYALAR 298
BLAST of mRNA_H-elongata_contig6916.14563.1 vs. uniprot
Match: A0A1Y2FQS7_PROLT (CrcB-like protein-domain-containing protein n=1 Tax=Protomyces lactucae-debilis TaxID=2754530 RepID=A0A1Y2FQS7_PROLT) HSP 1 Score: 70.9 bits (172), Expect = 5.250e-11 Identity = 67/215 (31.16%), Postives = 100/215 (46.51%), Query Frame = 1
Query: 7 PPRRLMVV-KCAYIAFCACFGTLARLYTDDIR--PSNTALQGSFLSNSIGSFALGVLEASDL--NEDRLGGLYTGLTVGLCGSYTTFSGWNLRI---------GRVALGNTQGPTG-GIVAAVSIVQTLAFFGVCYVAGQDLVKTLAEN-GRGRWRAGARGDRDTTVWGAVAGVISVYVLLAILMYVDDNRTRRIHWVASMFAPLGALLRYYLSR 603
P R L V+ +CA+I + GTL+RL ++ P N + + +G +G L+ + +R L+TGLTVG CGS TTFSGW L + G + G G++A ++ TLAF V + GQ LA + R R A+ +++ V++A+ VD RR + +A P GALLRY LS+
Sbjct: 18 PSRALQVIHECAWIGLLSLLGTLSRLALVELNTYPGNL-IPALVWAQFVGCAVMGFLKHDQVFFQPNRHKALFTGLTVGFCGSLTTFSGWLLACFTALSDYGTSEASAGRSTGYNAIGLIAQLT--TTLAFSIVGFKLGQHAADGLASIFPKARLTFPQATTRTAVCITALLALLAQAVVIAVAASVDHTSWRRRYTLALAMTPTGALLRYLLSQ 229
BLAST of mRNA_H-elongata_contig6916.14563.1 vs. uniprot
Match: A0A8H7BR82_9FUNG (CP-type G domain-containing protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BR82_9FUNG) HSP 1 Score: 57.0 bits (136), Expect = 4.870e-6 Identity = 61/191 (31.94%), Postives = 93/191 (48.69%), Query Frame = 1
Query: 64 GTLARLYTDDIRPSNTA-LQGSFLSNSIGSFALGVLEASDLNEDRLG-GLYTGLTVGLCGSYTTFSGWNLRIGRVALGNTQGP---TG-GIVAAVSIVQTLAFFGVC-----YVAGQDLVKTLAENGRGRWRAGARGDRDTTVWGAVAGVISVYVLLAILMYVDDNRTRRIHWVASMFAPLGALLRYYLSR 603
GTL R+ + N A + G + IG F +GV+ S + + L+TGL+ GLCGS TTFS W L I + N G TG I+AA+S + +C Y AG+ + T+ + R + A R + + V +A++M +RR ++ +FAP+GALLR+YL+R
Sbjct: 85 GTLIRVGLQSLETYNGAPVFGLVYAQWIGCFIMGVVVWSKIKLLQWYLPLHTGLSTGLCGSITTFSSWQLDIFK-EFSNYHGADHATGYNILAAISQLLVTIAVSLCGLQFGYHAGK--LWTVEKEKRTKIVACGYSLRRLKAYDYCIMIFGVLSWVAVVMAAIFTPSRRDVALSCVFAPVGALLRWYLAR 272 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6916.14563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6916.14563.1 >prot_H-elongata_contig6916.14563.1 ID=prot_H-elongata_contig6916.14563.1|Name=mRNA_H-elongata_contig6916.14563.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=202bp MQPPRRLMVVKCAYIAFCACFGTLARLYTDDIRPSNTALQGSFLSNSIGSback to top mRNA from alignment at H-elongata_contig6916:728..1333- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6916.14563.1 ID=mRNA_H-elongata_contig6916.14563.1|Name=mRNA_H-elongata_contig6916.14563.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=606bp|location=Sequence derived from alignment at H-elongata_contig6916:728..1333- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6916:728..1333- >mRNA_H-elongata_contig6916.14563.1 ID=mRNA_H-elongata_contig6916.14563.1|Name=mRNA_H-elongata_contig6916.14563.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1212bp|location=Sequence derived from alignment at H-elongata_contig6916:728..1333- (Himanthalia elongata Himel1 dioecious)back to top |