mRNA_H-elongata_contig69099.14556.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig69099.14556.1 vs. uniprot
Match: D7FTT1_ECTSI (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTT1_ECTSI) HSP 1 Score: 206 bits (524), Expect = 2.020e-59 Identity = 103/129 (79.84%), Postives = 115/129 (89.15%), Query Frame = 1
Query: 1 LTPYMTGADVANVCATAGRIAAREGSTAVSREHFSAAVDRVRHGLEKPGKDVPREEKERTAVHEAGHAVAGWMLPWCEAVVKVSIVWRGNALGEYSFSQSAMTERLSEMRDMVLDNVCMGLAGRAAEEV 387
+TPYMTGADVANVCATAGRIAAR GS AV EHFSAAVDRV+HGLEKP ++V +EK+RTA+HEAGHAVAGWMLPWC+ VVKVSIVWRGNALG FSQ+A+ ER SEMR+MVLD+VCM LAGRAAEEV
Sbjct: 683 MTPYMTGADVANVCATAGRIAARSGSDAVELEHFSAAVDRVQHGLEKPDREVTEDEKKRTAIHEAGHAVAGWMLPWCDEVVKVSIVWRGNALG---FSQTAVVERQSEMREMVLDSVCMTLAGRAAEEV 808
BLAST of mRNA_H-elongata_contig69099.14556.1 vs. uniprot
Match: A0A1T5J6B5_9BACT (ATP-dependent zinc metalloprotease FtsH n=1 Tax=Bacteroidales bacterium WCE2004 TaxID=1945890 RepID=A0A1T5J6B5_9BACT) HSP 1 Score: 112 bits (279), Expect = 3.660e-26 Identity = 61/127 (48.03%), Postives = 83/127 (65.35%), Query Frame = 1
Query: 4 TPYMTGADVANVCATAGRIAAREGSTAVSREHFSAAVDRVRHGLEKPGKDVPREEKERTAVHEAGHAVAGWMLPWCEAVVKVSIVWRGNALGEYSFSQSAMTERLSEMRDMVLDNVCMGLAGRAAEE 384
TP +GAD+ANVC A AAR G + ++ + FS AVDRV G+E+ + EEK TA HEAGHAVAGW+LP C+ V+KVSI+ RG ALG + E+++ + +LD++C +AGR AEE
Sbjct: 402 TPGFSGADIANVCNEAALTAARRGKSDINNQDFSDAVDRVVGGIERKKTIMSPEEKRLTAFHEAGHAVAGWLLPGCDPVLKVSIIPRGQALG---ITWMLPDEKVTRSKSEMLDDMCSLVAGRVAEE 525
BLAST of mRNA_H-elongata_contig69099.14556.1 vs. uniprot
Match: A0A315ZI97_9BACT (ATP-dependent zinc metalloprotease FtsH n=1 Tax=Sediminitomix flava TaxID=379075 RepID=A0A315ZI97_9BACT) HSP 1 Score: 110 bits (275), Expect = 1.290e-25 Identity = 65/129 (50.39%), Postives = 81/129 (62.79%), Query Frame = 1
Query: 4 TPYMTGADVANVCATAGRIAAREGSTAVSREHFSAAVDRVRHGLEKPGKDVPREEKERTAVHEAGHAVAGWMLPWCEAVVKVSIVWRG-NALGEYSFSQSAMTERLSEMRDMVLDNVCMGLAGRAAEEV 387
TP GA++ANVC A IAAR+ AV E F AA+DRV GLEK K + +EK+ A HEAGHAVAGW L + +VKVSIV RG ALG ++Q E+ + +LD +CM L GRAAEE+
Sbjct: 399 TPGFAGAEIANVCNEAALIAARKEKNAVEMEDFQAAIDRVIGGLEKKNKIISPDEKKIVAYHEAGHAVAGWFLEHADPLVKVSIVPRGVAALG---YAQYLPKEQFLHTTEQMLDEICMTLGGRAAEEI 524
BLAST of mRNA_H-elongata_contig69099.14556.1 vs. uniprot
Match: UPI0017DB7713 (ATP-dependent zinc metalloprotease FtsH n=1 Tax=Algoriphagus sp. TaxID=1872435 RepID=UPI0017DB7713) HSP 1 Score: 108 bits (270), Expect = 1.760e-25 Identity = 64/129 (49.61%), Postives = 80/129 (62.02%), Query Frame = 1
Query: 4 TPYMTGADVANVCATAGRIAAREGSTAVSREHFSAAVDRVRHGLEKPGKDVPREEKERTAVHEAGHAVAGWMLPWCEAVVKVSIVWRG-NALGEYSFSQSAMTERLSEMRDMVLDNVCMGLAGRAAEEV 387
TP GA++ANVC A IAAR TAV + F A+DRV GLEK K + EEK+ A HEAGHAVAGW L + +VKVSIV RG ALG ++Q E+ + ++D +CM L GRAAEE+
Sbjct: 108 TPGFAGAEIANVCNEAALIAARRNKTAVDMQDFQDAIDRVIGGLEKKNKIISPEEKKIVAYHEAGHAVAGWFLEHADPLVKVSIVPRGVAALG---YAQYLPKEQFLYQTEQLIDEMCMTLGGRAAEEI 233
BLAST of mRNA_H-elongata_contig69099.14556.1 vs. uniprot
Match: A0A353WQB8_9BACT (Cell division protein FtsH (Fragment) n=1 Tax=Rikenellaceae bacterium TaxID=2049048 RepID=A0A353WQB8_9BACT) HSP 1 Score: 109 bits (272), Expect = 2.040e-25 Identity = 60/128 (46.88%), Postives = 82/128 (64.06%), Query Frame = 1
Query: 4 TPYMTGADVANVCATAGRIAAREGSTAVSREHFSAAVDRVRHGLEKPGKDVPREEKERTAVHEAGHAVAGWMLPWCEAVVKVSIVWRGNALGEYSFSQSAMTERLSEMRDMVLDNVCMGLAGRAAEEV 387
TP +GAD+AN+C A AAR+G +AV F+ AVDRV G+E+ + EEK TA HEAGHAVAGW+LP C+ V+KVSI+ RG ALG + S E++ + ++D +C + GR AEE+
Sbjct: 236 TPGFSGADIANICNEAALNAARKGKSAVDNSDFTDAVDRVVGGIERKKTIMSPEEKRLTAYHEAGHAVAGWLLPGCDPVLKVSIIPRGQALG---LTWSLPDEKVMMSKSDMMDEMCCLVGGRVAEEM 360
BLAST of mRNA_H-elongata_contig69099.14556.1 vs. uniprot
Match: A0A2G2J469_9FLAO (ATP-dependent zinc metalloprotease FtsH n=8 Tax=Leeuwenhoekiella TaxID=283735 RepID=A0A2G2J469_9FLAO) HSP 1 Score: 109 bits (273), Expect = 2.380e-25 Identity = 63/128 (49.22%), Postives = 78/128 (60.94%), Query Frame = 1
Query: 4 TPYMTGADVANVCATAGRIAAREGSTAVSREHFSAAVDRVRHGLEKPGKDVPREEKERTAVHEAGHAVAGWMLPWCEAVVKVSIVWRGNALGEYSFSQSAMTERLSEMRDMVLDNVCMGLAGRAAEEV 387
TP +GAD+ANVC A IAAR+G TAV R+ F AVDR+ GLEK K + EEK A HEAGHA WML +VKV+IV RG +LG + ERL + +LD +C + GRAAE+V
Sbjct: 403 TPGFSGADIANVCNEAALIAARQGKTAVGRQDFLDAVDRIVGGLEKKNKIITPEEKRAIAFHEAGHATVSWMLEHAAPLVKVTIVPRGRSLGAAWYLPE---ERLIVRPEQMLDEMCAAMGGRAAEKV 527
BLAST of mRNA_H-elongata_contig69099.14556.1 vs. uniprot
Match: UPI001BBF08FE (AAA family ATPase n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=UPI001BBF08FE) HSP 1 Score: 106 bits (265), Expect = 2.420e-25 Identity = 61/128 (47.66%), Postives = 75/128 (58.59%), Query Frame = 1
Query: 4 TPYMTGADVANVCATAGRIAAREGSTAVSREHFSAAVDRVRHGLEKPGKDVPREEKERTAVHEAGHAVAGWMLPWCEAVVKVSIVWRGNALGEYSFSQSAMTERLSEMRDMVLDNVCMGLAGRAAEEV 387
TP GAD+ANVC A IAAR+G AV F A+DRV GLEK K + EK A HEAGHAV GW L ++KV+IV RG A ++Q TE+ D ++D +CM L GRAAEE+
Sbjct: 50 TPGFAGADIANVCNEAALIAARKGKDAVDMSDFQDAIDRVIGGLEKKNKIIAPHEKSIIAYHEAGHAVCGWFLEHAYPLLKVTIVPRGTAA--LGYAQYTPTEQYLYNTDQLMDQICMTLGGRAAEEI 175
BLAST of mRNA_H-elongata_contig69099.14556.1 vs. uniprot
Match: A0A4V1UUQ5_9BACT (AAA family ATPase (Fragment) n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=A0A4V1UUQ5_9BACT) HSP 1 Score: 107 bits (267), Expect = 2.440e-25 Identity = 61/128 (47.66%), Postives = 79/128 (61.72%), Query Frame = 1
Query: 4 TPYMTGADVANVCATAGRIAAREGSTAVSREHFSAAVDRVRHGLEKPGKDVPREEKERTAVHEAGHAVAGWMLPWCEAVVKVSIVWRGNALGEYSFSQSAMTERLSEMRDMVLDNVCMGLAGRAAEEV 387
TP +GAD+ANVC A IAAR+ TAV ++ F AVDR+ GLEK K + +EK+ A+HEAGHA WML +VKV+IV RG +LG + ERL D +LD +C + GRAAE+V
Sbjct: 105 TPGFSGADIANVCNEAALIAARKNKTAVDKQDFLDAVDRIVGGLEKKNKIITPDEKKAIAIHEAGHATVSWMLEHAAPLVKVTIVPRGQSLGAAWYLPE---ERLIVRPDQMLDEMCATMGGRAAEKV 229
BLAST of mRNA_H-elongata_contig69099.14556.1 vs. uniprot
Match: A0A2M6GNC5_9BACT (ATP-dependent zinc metalloprotease FtsH n=1 Tax=Cytophagales bacterium CG18_big_fil_WC_8_21_14_2_50_42_9 TaxID=1973956 RepID=A0A2M6GNC5_9BACT) HSP 1 Score: 109 bits (273), Expect = 2.450e-25 Identity = 60/128 (46.88%), Postives = 78/128 (60.94%), Query Frame = 1
Query: 4 TPYMTGADVANVCATAGRIAAREGSTAVSREHFSAAVDRVRHGLEKPGKDVPREEKERTAVHEAGHAVAGWMLPWCEAVVKVSIVWRGNALGEYSFSQSAMTERLSEMRDMVLDNVCMGLAGRAAEEV 387
TP GA++ANVC A IAAR T V + F+ A+DRV GLEK K + EEK A HEAGHA+AGW L C+ +VKVSIV RG + ++Q E+ + ++D +CM L GRAAEE+
Sbjct: 402 TPGFAGAEIANVCNEAALIAARRNKTKVEMQDFNDAIDRVIGGLEKKNKIISPEEKRIVAYHEAGHAIAGWFLEHCDPLVKVSIVPRG--IAALGYAQYLPKEQFLYTTEQLIDEMCMALGGRAAEEL 527
BLAST of mRNA_H-elongata_contig69099.14556.1 vs. uniprot
Match: A0A3D6EF49_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Rikenellaceae bacterium TaxID=2049048 RepID=A0A3D6EF49_9BACT) HSP 1 Score: 105 bits (262), Expect = 2.660e-25 Identity = 58/124 (46.77%), Postives = 80/124 (64.52%), Query Frame = 1
Query: 16 TGADVANVCATAGRIAAREGSTAVSREHFSAAVDRVRHGLEKPGKDVPREEKERTAVHEAGHAVAGWMLPWCEAVVKVSIVWRGNALGEYSFSQSAMTERLSEMRDMVLDNVCMGLAGRAAEEV 387
+GAD+AN+C A AAR+G +AV F+ AVDRV G+E+ + EEK TA HEAGHAVAGW+LP C+ V+KVSI+ RG ALG + S E++ + ++D +C + GR AEE+
Sbjct: 1 SGADIANICNEAALNAARKGKSAVDNSDFTDAVDRVVGGIERKKTIMSPEEKRLTAYHEAGHAVAGWLLPGCDPVLKVSIIPRGQALG---LTWSLPDEKVMMSKSDMMDEMCCLVGGRVAEEM 121 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69099.14556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig69099.14556.1 >prot_H-elongata_contig69099.14556.1 ID=prot_H-elongata_contig69099.14556.1|Name=mRNA_H-elongata_contig69099.14556.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp MTGADVANVCATAGRIAAREGSTAVSREHFSAAVDRVRHGLEKPGKDVPRback to top mRNA from alignment at H-elongata_contig69099:115..2304+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig69099.14556.1 ID=mRNA_H-elongata_contig69099.14556.1|Name=mRNA_H-elongata_contig69099.14556.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2190bp|location=Sequence derived from alignment at H-elongata_contig69099:115..2304+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig69099:115..2304+ >mRNA_H-elongata_contig69099.14556.1 ID=mRNA_H-elongata_contig69099.14556.1|Name=mRNA_H-elongata_contig69099.14556.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig69099:115..2304+ (Himanthalia elongata Himel1 dioecious)back to top |