mRNA_H-elongata_contig69098.14555.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69098.14555.1
Unique NamemRNA_H-elongata_contig69098.14555.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig69098.14555.1 vs. uniprot
Match: D8LNH9_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNH9_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 2.860e-42
Identity = 63/92 (68.48%), Postives = 81/92 (88.04%), Query Frame = 1 
Query:    1 PQRSRHVILISLPRWFDWIFRFVRPLLTESTKSKMTSCTSTNVYQTLLSKIDNDQIPKEYGGASQHGLGEHPYEVERKSGPVHSKKKKALFL 276
            PQRS H++L+S PRWFDWIFRF+RPLL+ESTKSKMTSCT+ +VY+TLLSKIDNDQIPKEYGGAS++ LGEHPYEV+ ++G +   ++K + +
Sbjct:    3 PQRSTHLLLLSWPRWFDWIFRFIRPLLSESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYEVDMRNGALKVLEEKGIDM 94
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BLAST of mRNA_H-elongata_contig69098.14555.1 vs. uniprot
Match: A0A6H5K175_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K175_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 3.450e-35
Identity = 62/95 (65.26%), Postives = 81/95 (85.26%), Query Frame = 1 
Query:    1 PQRSRHVILISLPRWFDWIFRFVRPLLTESTKSKMTSCTSTNVYQTLLSKIDNDQIPKEYGGASQHGLGEHPYE---VERKSGPVHSKKKKALFL 276
            P+RS H++L+S PRWFDWIFRF+RPLL+ESTKSKMTSCT+ +VY+TLLSKIDNDQIPKEYGGAS++ LGEHPYE   V+ ++G +   ++K + +
Sbjct:  856 PERSTHLLLLSWPRWFDWIFRFIRPLLSESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYEAIEVDMRNGALRVLEEKGIDM 950
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BLAST of mRNA_H-elongata_contig69098.14555.1 vs. uniprot
Match: A0A6H5LC05_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC05_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 5.010e-35
Identity = 59/82 (71.95%), Postives = 74/82 (90.24%), Query Frame = 1 
Query:    1 PQRSRHVILISLPRWFDWIFRFVRPLLTESTKSKMTSCTSTNVYQTLLSKIDNDQIPKEYGGASQHGLGEHPYEVERKSGPV 246
            P+RS H++L+S PRWFDWI+RF+RPL++ESTKSKMTSCT+ +VY+TLLSKIDNDQIPKEYGGAS++ LGEHPYEV  ++  V
Sbjct:  523 PERSAHLMLLSWPRWFDWIYRFIRPLISESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYEVAMRNSVV 604
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BLAST of mRNA_H-elongata_contig69098.14555.1 vs. uniprot
Match: D7G352_ECTSI (Phosphatidylinositol transfer protein SEC14 and related proteins n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G352_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 6.330e-35
Identity = 58/73 (79.45%), Postives = 69/73 (94.52%), Query Frame = 1 
Query:    4 QRSRHVILISLPRWFDWIFRFVRPLLTESTKSKMTSCTSTNVYQTLLSKIDNDQIPKEYGGASQHGLGEHPYE 222
            QRS H++L+S PRWFDWI+RF+RPLL+ESTKSKMTSCT+ +VY+TLLSKIDNDQIPKEYGGAS++ LGEHPYE
Sbjct:  298 QRSAHLLLLSWPRWFDWIYRFIRPLLSESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYE 370
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BLAST of mRNA_H-elongata_contig69098.14555.1 vs. uniprot
Match: D8LL64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL64_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 7.410e-16
Identity = 33/40 (82.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:  103 MTSCTSTNVYQTLLSKIDNDQIPKEYGGASQHGLGEHPYE 222
            MTSCT+ +VY+TLLSKIDNDQIPKEYGGAS++ LGEHPYE
Sbjct:    1 MTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYE 40
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BLAST of mRNA_H-elongata_contig69098.14555.1 vs. uniprot
Match: A0A7S1UMG2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UMG2_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.400e-8
Identity = 32/75 (42.67%), Postives = 42/75 (56.00%), Query Frame = 1 
Query:    1 PQRSRHVILISLPRWFDWIFRFVRPLLTESTKSKMTSCTSTNVYQTLLSKIDNDQIPKEYGGASQHGLGEHPYEV 225
            P   +   L++ P W    F   R +L ES K  + S   +     L   ID++QIPKEYGG+SQ+ LGEHPYEV
Sbjct:  528 PMAMKRAFLVNSPWWLAGAFSGFRSILPESVKVDILS--ESQSVTALRKFIDDNQIPKEYGGSSQYALGEHPYEV 600
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BLAST of mRNA_H-elongata_contig69098.14555.1 vs. uniprot
Match: A0A7S1ZXQ5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZXQ5_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.200e-7
Identity = 27/76 (35.53%), Postives = 40/76 (52.63%), Query Frame = 1 
Query:    1 PQRSRHVILISLPRWFDWIFRFVRPLLTESTKSKMTSCTSTNVYQTLLSKIDNDQIPKEYGGASQHGLGEHPYEVE 228
            P   +   + ++P W    + +    L ES    M S + +     L   +D+DQIPKEYGG+S + LGEHP E+E
Sbjct:  285 PMNVKRACIANIPFWLAGSYSYANRFLPESVAVSMMSSSKSAAEGGLRDFVDDDQIPKEYGGSSPYKLGEHPLEIE 360
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69098.14555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LNH9_ECTSI2.860e-4268.48CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K175_9PHAE3.450e-3565.26CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5LC05_9PHAE5.010e-3571.95CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
D7G352_ECTSI6.330e-3579.45Phosphatidylinositol transfer protein SEC14 and re... [more]
D8LL64_ECTSI7.410e-1682.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1UMG2_9STRA1.400e-842.67Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S1ZXQ5_9STRA3.200e-735.53Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69098contigH-elongata_contig69098:321..2019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue1.7e-07
Seed eggNOG ortholog157072.XP_008860831.1
EggNOG free text desc.macromolecule localization
EggNOG OGsKOG1471@1,KOG1471@2759
Ec32 ortholog descriptionCRAL-TRIO domain
Ec32 orthologEc-24_002880.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPhosphatidylinositol transfer protein SEC14 and related proteins
Ec32 orthologEc-24_002870.1
Exons2
Model size288
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931088.1377292-CDS-H-elongata_contig69098:320..4221622931088.1377292-CDS-H-elongata_contig69098:320..422Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69098 321..422 +
1691679693.0118861-CDS-H-elongata_contig69098:320..4221691679693.0118861-CDS-H-elongata_contig69098:320..422Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69098 321..422 +
1622931088.160337-CDS-H-elongata_contig69098:1833..20191622931088.160337-CDS-H-elongata_contig69098:1833..2019Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69098 1834..2019 +
1691679693.0244155-CDS-H-elongata_contig69098:1833..20191691679693.0244155-CDS-H-elongata_contig69098:1833..2019Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69098 1834..2019 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69098.14555.1prot_H-elongata_contig69098.14555.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69098 321..2019 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69098.14555.1

>prot_H-elongata_contig69098.14555.1 ID=prot_H-elongata_contig69098.14555.1|Name=mRNA_H-elongata_contig69098.14555.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
PQRSRHVILISLPRWFDWIFRFVRPLLTESTKSKMTSCTSTNVYQTLLSK
IDNDQIPKEYGGASQHGLGEHPYEVERKSGPVHSKKKKALFLWEE*
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mRNA from alignment at H-elongata_contig69098:321..2019+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69098.14555.1 ID=mRNA_H-elongata_contig69098.14555.1|Name=mRNA_H-elongata_contig69098.14555.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1699bp|location=Sequence derived from alignment at H-elongata_contig69098:321..2019+ (Himanthalia elongata Himel1 dioecious)
CCGCAGCGGTCGAGGCACGTGATCCTCATCAGCTTGCCGCGATGGTTTGA
CTGGATTTTTCGATTTGTCCGACCACTGCTGACTGAATCTACCAAGAGCA
AGGTATGATCGAAGTTTCTTACAGTACTCTATACATGCTTTTTATTTTTT
ATCTTTTTCTTTGTTTGTTTTTTTATTTTTCATTTCTTCCCTGTTCAGCA
GACCTGACCACGAGTGGGATTGGCCACCGTGTAGAGTAGTTTTTTCGGGT
TGGCAACCAATGCGCTGAATGTGAGAAATAAGAACAAACAACAATAGTTT
TAAAAAGGCGGCGTAAAAAAGTAGCGACTATATTTTGATCGGGGGATCGG
GAGAAAAAAAGAACGGACGGAGATACGTGTGTGTGTGTGCGTGTATGTGT
GTGTATTTATTAAATTACACATAACCGCGCAATCCGACTTCCGTATTGAT
CCTCCCAACTGAGGATCAATAATATTTCCTTTAAAAAACTCTGGTCATAC
GTGACAAAGGAGACGTGTGTAGACGTGTGTGTGTGTGGTCATGACGCCAT
CACACATTATAGTAGTAGAGTATGGATCGATCGGGTATGGTTGCTTCCTT
CTGATGGGCGCCCGTGAATACACCTGTTGTACAGGTGTACTCGAAACACG
CACCAGTAAAAAAAACGCCTACTAAACCAGCATTAATTTAACCCCCCCCC
AAAAAAACGTCGATTTCATGCAGAGTAAAATAGCCGTTTCTCTGAAACCA
TATATATATATACTGGCTGGCCCAACCCGCCTCTAACCCTAACCCACACA
CCCACACCCATGGGGCTGGGTTTTTGTGGATATATGGTGGTTCAGTAGGC
GTTTTTTTTACAGGTGCGTGTTTCGAGTACACATGTACAGGTGTATTCAC
GGGCGCCCCCTTTTTATGGTCAGCCGGAAAGCGAAAATGAATTTTCCCCG
TCCCCGTTCGTGCCTGAGAATTTGGCCTCGTGAGACAGGCTTGGCCTTCC
CGTCCTACTTATATTTTTTGTAACGATTGGTGTATTTTTCCCTTCCTTTC
TTTTTAATATTACTCTTGACTTTTTCTTTTCTTTCTAATTTTTTATTCGT
TTTTTTTTCGCCTTCATTTTTTATTGTTTTCCTTCCTAGTTATTTTTTTT
CTCTTAATTTATTGCTCCTCTTTTTCTCTTCATTTTTCTTTCTCTTCTTT
TATGTATTCTTTTCTATCTCTTTTATTTTATTTCATTCAGAATTTATCGT
TTTCCCTCCGATTTATATTTTAACCCTTCCTATTTTCGCCCTTTTTTGTC
ATTTCCTCTTTTAGAGCTATTATTATATCCCCCCCCCCACCCTCAATAAT
TTCGTGGGCATTTAGGAAAAGTACGGCGGACTACCCCCAACGTTACATGA
CATTTACCTTGTCCCTCGAACGATAAATCTATCGTTTCTTTATGTAGCAT
GTATTATTAGACGTGAGCTTTGAGCTTGTATTTGTTGTTTCTGTTTTTGT
GCTCGTCGCGCAGATGACCTCCTGCACATCGACCAATGTCTACCAGACCT
TGCTCTCCAAGATCGACAACGACCAGATTCCAAAGGAGTACGGAGGGGCG
TCCCAGCACGGTCTGGGGGAACACCCTTACGAGGTGGAGAGGAAAAGCGG
ACCGGTGCACTCGAAAAAGAAAAAAGCGCTCTTCTTGTGGGAAGAATAG
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Coding sequence (CDS) from alignment at H-elongata_contig69098:321..2019+

>mRNA_H-elongata_contig69098.14555.1 ID=mRNA_H-elongata_contig69098.14555.1|Name=mRNA_H-elongata_contig69098.14555.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig69098:321..2019+ (Himanthalia elongata Himel1 dioecious)
CCGCAGCGGTCGAGGCACGTGATCCTCATCAGCTTGCCGCGATGGTTTGA
CTGGATTTTTCGATTTGTCCGACCACTGCTGACTGAATCTACCAAGAGCA
AGCCGCAGCGGTCGAGGCACGTGATCCTCATCAGCTTGCCGCGATGGTTT
GACTGGATTTTTCGATTTGTCCGACCACTGCTGACTGAATCTACCAAGAG
CAAGATGACCTCCTGCACATCGACCAATGTCTACCAGACCTTGCTCTCCA
AGATCGACAACGACCAGATTCCAAAGGAGTACGGAGGGGCGTCCCAGCAC
GGTCTGGGGGAACACCCTTACGAGGTGGAGAGGAAAAGCGGACCGGTGCA
CTCGAAAAAGAAAAAAGCGCTCTTCTTGTGGGAAGAATAGATGACCTCCT
GCACATCGACCAATGTCTACCAGACCTTGCTCTCCAAGATCGACAACGAC
CAGATTCCAAAGGAGTACGGAGGGGCGTCCCAGCACGGTCTGGGGGAACA
CCCTTACGAGGTGGAGAGGAAAAGCGGACCGGTGCACTCGAAAAAGAAAA
AAGCGCTCTTCTTGTGGGAAGAATAG
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