mRNA_H-elongata_contig69086.14553.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69086.14553.1
Unique NamemRNA_H-elongata_contig69086.14553.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig69086.14553.1 vs. uniprot
Match: D7FVW1_ECTSI (Ribosomal RNA-processing protein 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVW1_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 3.430e-63
Identity = 94/110 (85.45%), Postives = 102/110 (92.73%), Query Frame = 1 
Query:    1 YHRGFRDQVEKWPVHPLDIIIGWLGKYPNARVADFGCGEARLAASVPNKVHSFDLVSPHPRVIACDMAHVPLKDASVNVVVFCLSLMGTNLADFLREAHRVLMSGGRIKV 330
            YHRGFR+QVEKWPVHPLDIII WL KYP ARVADFGCGEARLAA+VPNKVHSFDLVSP+P V ACDMA+VP+KDASV+V VFCLSLMGTNLADFLREAHRVL+ GG +KV
Sbjct:   96 YHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAVFCLSLMGTNLADFLREAHRVLVPGGLVKV 205
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BLAST of mRNA_H-elongata_contig69086.14553.1 vs. uniprot
Match: A0A6H5KX03_9PHAE (Ribosomal RNA-processing protein 8 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX03_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 6.990e-61
Identity = 93/110 (84.55%), Postives = 102/110 (92.73%), Query Frame = 1 
Query:    1 YHRGFRDQVEKWPVHPLDIIIGWLGKYPNARVADFGCGEARLAASVPNKVHSFDLVSPHPRVIACDMAHVPLKDASVNVVVFCLSLMGTNLADFLREAHRVLMSGGRIKV 330
            YHRGFR+QVEKWPVHPLDIII WL KYP ARVADFGCGEARLAA+VPNKVHSFDLVSP+P V ACDMA+VP+KDASV+V +FCLSLMGTNLADFLREAHRVL+ GG +KV
Sbjct:  354 YHRGFREQVEKWPVHPLDIIIDWLKKYPKARVADFGCGEARLAATVPNKVHSFDLVSPNPLVTACDMANVPIKDASVHVAIFCLSLMGTNLADFLREAHRVLVPGGLVKV 463
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BLAST of mRNA_H-elongata_contig69086.14553.1 vs. uniprot
Match: A0A836C7W6_9STRA (Ribosomal RNA-processing protein 8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7W6_9STRA)

HSP 1 Score: 184 bits (468), Expect = 4.200e-57
Identity = 83/110 (75.45%), Postives = 94/110 (85.45%), Query Frame = 1 
Query:    1 YHRGFRDQVEKWPVHPLDIIIGWLGKYPNARVADFGCGEARLAASVPNKVHSFDLVSPHPRVIACDMAHVPLKDASVNVVVFCLSLMGTNLADFLREAHRVLMSGGRIKV 330
            YHRGFR+QVEKWPVHPLD+II WL KYP A +ADFGCGEARLA +VPN+ HSFDL +P+  V ACDMAHVPL DASV++ VFCLSLMGTNLADF+REA RVL  GG +KV
Sbjct:   46 YHRGFREQVEKWPVHPLDVIIRWLKKYPKAVIADFGCGEARLAQTVPNRCHSFDLCAPNAHVTACDMAHVPLPDASVHIAVFCLSLMGTNLADFVREARRVLKPGGLVKV 155
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BLAST of mRNA_H-elongata_contig69086.14553.1 vs. uniprot
Match: A0A024G7I7_9STRA (Ribosomal RNA-processing protein 8 n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024G7I7_9STRA)

HSP 1 Score: 165 bits (417), Expect = 1.120e-48
Identity = 68/110 (61.82%), Postives = 94/110 (85.45%), Query Frame = 1 
Query:    1 YHRGFRDQVEKWPVHPLDIIIGWLGKYPNARVADFGCGEARLAASVPNKVHSFDLVSPHPRVIACDMAHVPLKDASVNVVVFCLSLMGTNLADFLREAHRVLMSGGRIKV 330
            YH+GFR+QV KWP++PLDI I ++ K+PNA VADFGCGEARLA SVPN+VHSFDLV+P+  V+AC++AHVPL   S+++ ++CL+LMGT + ++LREAHRV+ +GG +K+
Sbjct:  101 YHQGFREQVTKWPINPLDIFIDYIKKHPNAVVADFGCGEARLAQSVPNRVHSFDLVAPNDHVVACNIAHVPLNSKSIDIAIYCLALMGTTIPEYLREAHRVMKAGGILKI 210
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BLAST of mRNA_H-elongata_contig69086.14553.1 vs. uniprot
Match: L1JVI9_GUITC (Ribosomal RNA-processing protein 8 n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JVI9_GUITC)

HSP 1 Score: 161 bits (407), Expect = 5.920e-48
Identity = 68/110 (61.82%), Postives = 92/110 (83.64%), Query Frame = 1 
Query:    1 YHRGFRDQVEKWPVHPLDIIIGWLGKYPNARVADFGCGEARLAASVPNKVHSFDLVSPHPRVIACDMAHVPLKDASVNVVVFCLSLMGTNLADFLREAHRVLMSGGRIKV 330
            YH GFR+Q +KWPV+P+++II +L KYP  +VAD GCG+A++A ++PNKVHSFDL+S  P V+ACD+AHVPLKD+SVN VV  L+LMGTN  DFL+EAHR+++ GG++ V
Sbjct:   41 YHEGFREQTKKWPVNPVNVIIKYLKKYPKWKVADLGCGDAQIAKTLPNKVHSFDLISKDPCVVACDIAHVPLKDSSVNAVVLSLALMGTNYVDFLKEAHRIVVKGGKVLV 150
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BLAST of mRNA_H-elongata_contig69086.14553.1 vs. uniprot
Match: A0A7S3MDF6_9STRA (Ribosomal RNA-processing protein 8 (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MDF6_9STRA)

HSP 1 Score: 157 bits (398), Expect = 4.920e-46
Identity = 74/111 (66.67%), Postives = 90/111 (81.08%), Query Frame = 1 
Query:    1 YHRGFRDQVEKWPVHPLDIIIGWLG-KYPNARVADFGCGEARLAASVPNKVHSFDLVSPHPRVIACDMAHVPLKDASVNVVVFCLSLMGTNLADFLREAHRVLMSGGRIKV 330
            YH GFR+Q   WP +PLD II W+  K+  A VAD GCG+ARLAASVPN VHSFDLVS +PRV+ACD+A VPLKD SV++VVFCL+LMGTN+ADF+REAHR+L   G ++V
Sbjct:   98 YHTGFREQCSYWPYNPLDGIIKWISTKHRKAVVADMGCGDARLAASVPNTVHSFDLVSNNPRVVACDIADVPLKDQSVDIVVFCLALMGTNIADFVREAHRILKPHGIMRV 208
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BLAST of mRNA_H-elongata_contig69086.14553.1 vs. uniprot
Match: UPI0008744A7C (ribosomal RNA-processing protein 8 n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=UPI0008744A7C)

HSP 1 Score: 156 bits (394), Expect = 2.370e-43
Identity = 74/111 (66.67%), Postives = 90/111 (81.08%), Query Frame = 1 
Query:    1 YHRGFRDQVEKWPVHPLDIIIGWLGKYPNAR-VADFGCGEARLAASVPNKVHSFDLVSPHPRVIACDMAHVPLKDASVNVVVFCLSLMGTNLADFLREAHRVLMSGGRIKV 330
            YH G+R QV+ WP++PLDIII  + K P    VADFGCGEA+LA SVP KVHSFDLV+ HP +IACDMA VPLK+AS++VVVFCLSLMGTN+ D+L EA+RVL  GG +K+
Sbjct:  301 YHEGYRQQVKAWPMNPLDIIIKAIKKMPKTHIVADFGCGEAKLAKSVPQKVHSFDLVAIHPIIIACDMAKVPLKEASIDVVVFCLSLMGTNIHDYLLEANRVLKLGGIMKI 411
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BLAST of mRNA_H-elongata_contig69086.14553.1 vs. uniprot
Match: A0A482SLV7_9ARCH (Methyltransferase domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SLV7_9ARCH)

HSP 1 Score: 151 bits (381), Expect = 3.140e-43
Identity = 69/111 (62.16%), Postives = 90/111 (81.08%), Query Frame = 1 
Query:    1 YHRGFRDQVEKWPVHPLDIIIGWLGKY-PNARVADFGCGEARLAASVPNKVHSFDLVSPHPRVIACDMAHVPLKDASVNVVVFCLSLMGTNLADFLREAHRVLMSGGRIKV 330
            YH G+R+Q  +WP++PLD+II W+ ++  +A VAD GCGEARLAASV N VHSFDLV+ +  V ACD+AHVPL + +V++VVFCLSLMGTNL DF++EAHR+L  GG +KV
Sbjct:  140 YHSGYREQAAQWPINPLDLIIHWIQRHHSSAVVADMGCGEARLAASVRNTVHSFDLVAANASVTACDIAHVPLFNNTVDIVVFCLSLMGTNLVDFVKEAHRILKVGGLLKV 250
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BLAST of mRNA_H-elongata_contig69086.14553.1 vs. uniprot
Match: UPI001C713735 (ribosomal RNA-processing protein 8-like n=1 Tax=Penaeus japonicus TaxID=27405 RepID=UPI001C713735)

HSP 1 Score: 149 bits (375), Expect = 4.290e-43
Identity = 71/112 (63.39%), Postives = 90/112 (80.36%), Query Frame = 1 
Query:    1 YHRGFRDQVEKWPVHPLDIIIGWLGKYPNARV-ADFGCGEARLAASVPN-KVHSFDLVSPHPRVIACDMAHVPLKDASVNVVVFCLSLMGTNLADFLREAHRVLMSGGRIKV 330
            YH G+++QVE+WP++PL++II WL K P   + ADFGCG+A+L+ SVP  KVHSFDLV+ + RV ACDMAH PLK  SV+VVVFCLSLMGTN+ DF+ EA+RVL  GG +KV
Sbjct:   39 YHVGYQNQVEQWPINPLNVIITWLKKQPKDWIIADFGCGDAKLSMSVPQTKVHSFDLVAANNRVTACDMAHTPLKPGSVDVVVFCLSLMGTNIKDFIIEANRVLKKGGIMKV 150
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BLAST of mRNA_H-elongata_contig69086.14553.1 vs. uniprot
Match: A0A3M6V8R3_9STRA (Ribosomal RNA-processing protein 8 n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V8R3_9STRA)

HSP 1 Score: 150 bits (380), Expect = 4.680e-43
Identity = 66/110 (60.00%), Postives = 88/110 (80.00%), Query Frame = 1 
Query:    1 YHRGFRDQVEKWPVHPLDIIIGWLGKYPNARVADFGCGEARLAASVPNKVHSFDLVSPHPRVIACDMAHVPLKDASVNVVVFCLSLMGTNLADFLREAHRVLMSGGRIKV 330
            YH+GFR+  +KWP +PLD  I ++ +YP A VADFGCG+ARL+ SVPNKVHSFDLVS  P V AC++A VPLKD+SV++ V+CL+LMGT++ +++RE HRVL  GG + V
Sbjct:  105 YHQGFREMADKWPTNPLDNFIDYVKRYPKAVVADFGCGDARLSESVPNKVHSFDLVSCKPHVTACNIADVPLKDSSVDIGVYCLALMGTSVREYIREVHRVLKPGGILMV 214
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69086.14553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVW1_ECTSI3.430e-6385.45Ribosomal RNA-processing protein 8 n=1 Tax=Ectocar... [more]
A0A6H5KX03_9PHAE6.990e-6184.55Ribosomal RNA-processing protein 8 n=1 Tax=Ectocar... [more]
A0A836C7W6_9STRA4.200e-5775.45Ribosomal RNA-processing protein 8 n=1 Tax=Tribone... [more]
A0A024G7I7_9STRA1.120e-4861.82Ribosomal RNA-processing protein 8 n=2 Tax=Albugo ... [more]
L1JVI9_GUITC5.920e-4861.82Ribosomal RNA-processing protein 8 n=1 Tax=Guillar... [more]
A0A7S3MDF6_9STRA4.920e-4666.67Ribosomal RNA-processing protein 8 (Fragment) n=2 ... [more]
UPI0008744A7C2.370e-4366.67ribosomal RNA-processing protein 8 n=1 Tax=Anoplop... [more]
A0A482SLV7_9ARCH3.140e-4362.16Methyltransferase domain-containing protein n=1 Ta... [more]
UPI001C7137354.290e-4363.39ribosomal RNA-processing protein 8-like n=1 Tax=Pe... [more]
A0A3M6V8R3_9STRA4.680e-4360.00Ribosomal RNA-processing protein 8 n=2 Tax=Peronos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69086contigH-elongata_contig69086:2310..2961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score202.2
Seed ortholog evalue1.2e-49
Seed eggNOG ortholog2880.D7FVW1
Preferred nameRRP8
KEGG koko:K10260,ko:K14850,ko:K17478
KEGG Pathwayko04120,map04120
KEGG ModuleM00387
GOsGO:0000154,GO:0000183,GO:0000785,GO:0000792,GO:0001510,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005677,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006996,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008219,GO:0008649,GO:0008757,GO:0009267,GO:0009451,GO:0009605,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0012501,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016433,GO:0016458,GO:0016740,GO:0016741,GO:0017053,GO:0019219,GO:0019222,GO:0022613,GO:0023052,GO:0030684,GO:0030686,GO:0030687,GO:0030688,GO:0031167,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0033553,GO:0033554,GO:0034470,GO:0034641,GO:0034660,GO:0035064,GO:0035556,GO:0040029,GO:0042149,GO:0042254,GO:0042273,GO:0042393,GO:0042594,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045787,GO:0045814,GO:0045892,GO:0045934,GO:0046015,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0071156,GO:0071158,GO:0071496,GO:0071704,GO:0071840,GO:0071944,GO:0072331,GO:0072332,GO:0080090,GO:0090068,GO:0090304,GO:0090568,GO:0097190,GO:0097193,GO:0140030,GO:0140034,GO:0140098,GO:0140102,GO:1901360,GO:1902679,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.chromatin silencing at rDNA
EggNOG OGsKOG3045@1,KOG3045@2759
EC2.1.1.287
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03009,ko03110,ko04121,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931087.9824603-CDS-H-elongata_contig69086:2309..24561622931087.9824603-CDS-H-elongata_contig69086:2309..2456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69086 2310..2456 +
1691679692.9576058-CDS-H-elongata_contig69086:2309..24561691679692.9576058-CDS-H-elongata_contig69086:2309..2456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69086 2310..2456 +
1622931088.002002-CDS-H-elongata_contig69086:2778..29611622931088.002002-CDS-H-elongata_contig69086:2778..2961Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69086 2779..2961 +
1691679692.970531-CDS-H-elongata_contig69086:2778..29611691679692.970531-CDS-H-elongata_contig69086:2778..2961Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69086 2779..2961 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69086.14553.1prot_H-elongata_contig69086.14553.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69086 2310..2961 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69086.14553.1

>prot_H-elongata_contig69086.14553.1 ID=prot_H-elongata_contig69086.14553.1|Name=mRNA_H-elongata_contig69086.14553.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
YHRGFRDQVEKWPVHPLDIIIGWLGKYPNARVADFGCGEARLAASVPNKV
HSFDLVSPHPRVIACDMAHVPLKDASVNVVVFCLSLMGTNLADFLREAHR
VLMSGGRIKV
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mRNA from alignment at H-elongata_contig69086:2310..2961+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69086.14553.1 ID=mRNA_H-elongata_contig69086.14553.1|Name=mRNA_H-elongata_contig69086.14553.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=652bp|location=Sequence derived from alignment at H-elongata_contig69086:2310..2961+ (Himanthalia elongata Himel1 dioecious)
TACCATCGAGGATTTAGGGACCAAGTTGAAAAGTGGCCTGTGCATCCATT
AGATATCATCATTGGCTGGCTGGGCAAGTACCCTAATGCCCGAGTGGCGG
ACTTCGGTTGCGGCGAGGCACGTCTAGCAGCTTCCGTGCCCAACAAGGTG
TGAGGTAGNNNNNNNNNNAGGACGTTCTCGCACCTTCCTGGCTGGAGAAG
GTGGAGGGGAGTGAAGGGGGGGGGGGGGGGTGGCACTTCGCTTTGTATAT
TTACCCTTGTCGAGGTGGAGTGCTGCGTCTTGAGGGGATATGTCCGGTTG
ATAGATTTGGAGCGACGTATGCCCCATATGTTGACTCTTTCCTTAAAACA
ATAATGTATATTTTATAGAAGTACTGAGCTTCGGTTGCTGAAGTTTTCTG
TTTTTTCTTCTTTCCGCCCCTTAATACACGTGCCATGACTGACACCTTGT
CTCCCGATCGATTTCACAGGTACACTCGTTCGATTTGGTGTCCCCGCACC
CACGCGTGATTGCGTGCGACATGGCACACGTGCCTCTGAAAGACGCTTCG
GTAAACGTGGTTGTCTTCTGTCTGTCGCTCATGGGGACCAATCTTGCCGA
TTTCTTGCGTGAAGCCCACCGCGTGCTCATGTCCGGAGGGCGAATCAAGG
TA
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Coding sequence (CDS) from alignment at H-elongata_contig69086:2310..2961+

>mRNA_H-elongata_contig69086.14553.1 ID=mRNA_H-elongata_contig69086.14553.1|Name=mRNA_H-elongata_contig69086.14553.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig69086:2310..2961+ (Himanthalia elongata Himel1 dioecious)
TACCATCGAGGATTTAGGGACCAAGTTGAAAAGTGGCCTGTGCATCCATT
AGATATCATCATTGGCTGGCTGGGCAAGTACCCTAATGCCCGAGTGGCGG
ACTTCGGTTGCGGCGAGGCACGTCTAGCAGCTTCCGTGCCCAACAAGTAC
CATCGAGGATTTAGGGACCAAGTTGAAAAGTGGCCTGTGCATCCATTAGA
TATCATCATTGGCTGGCTGGGCAAGTACCCTAATGCCCGAGTGGCGGACT
TCGGTTGCGGCGAGGCACGTCTAGCAGCTTCCGTGCCCAACAAGGTACAC
TCGTTCGATTTGGTGTCCCCGCACCCACGCGTGATTGCGTGCGACATGGC
ACACGTGCCTCTGAAAGACGCTTCGGTAAACGTGGTTGTCTTCTGTCTGT
CGCTCATGGGGACCAATCTTGCCGATTTCTTGCGTGAAGCCCACCGCGTG
CTCATGTCCGGAGGGCGAATCAAGGTAGTACACTCGTTCGATTTGGTGTC
CCCGCACCCACGCGTGATTGCGTGCGACATGGCACACGTGCCTCTGAAAG
ACGCTTCGGTAAACGTGGTTGTCTTCTGTCTGTCGCTCATGGGGACCAAT
CTTGCCGATTTCTTGCGTGAAGCCCACCGCGTGCTCATGTCCGGAGGGCG
AATCAAGGTA
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