mRNA_H-elongata_contig69011.14545.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69011.14545.1
Unique NamemRNA_H-elongata_contig69011.14545.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69011.14545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69011contigH-elongata_contig69011:1656..2243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size590
Cds size351
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931087.1561055-UTR-H-elongata_contig69011:1655..18921622931087.1561055-UTR-H-elongata_contig69011:1655..1892Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69011 1656..1892 +
1691679692.6860461-UTR-H-elongata_contig69011:1655..18921691679692.6860461-UTR-H-elongata_contig69011:1655..1892Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69011 1656..1892 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931087.1748366-CDS-H-elongata_contig69011:1892..22431622931087.1748366-CDS-H-elongata_contig69011:1892..2243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69011 1893..2243 +
1691679692.7048848-CDS-H-elongata_contig69011:1892..22431691679692.7048848-CDS-H-elongata_contig69011:1892..2243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69011 1893..2243 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69011.14545.1prot_H-elongata_contig69011.14545.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69011 1893..2243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69011.14545.1

>prot_H-elongata_contig69011.14545.1 ID=prot_H-elongata_contig69011.14545.1|Name=mRNA_H-elongata_contig69011.14545.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
MTKHDATVPDSTDPTGRDGCGGPARGDRRPGCQGCLRTVLTPPRTIRFGR
GPIRWSSYEVRANGGRGEIPPRVDTWERGGGRGHTAAVAETPSTLLLFTL
SITPCRGDLAGQRPWSS
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mRNA from alignment at H-elongata_contig69011:1656..2243+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69011.14545.1 ID=mRNA_H-elongata_contig69011.14545.1|Name=mRNA_H-elongata_contig69011.14545.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=588bp|location=Sequence derived from alignment at H-elongata_contig69011:1656..2243+ (Himanthalia elongata Himel1 dioecious)
CCTCTAGCATATCGTACCCCGCGCCTTCCTTCGCTTGCTTGGAACGCTGG
CCGAAACCCGAATCAACACTTCCAATGCGGGAGGGCCGCGGCTGATGAGA
CATGGGATCACCGCCACCACCACCGATCGAGTCGCTACGGTGGTACCGAT
ACTGCTGCTGCTGCTGCTCCGGCTCGGCGACGCCTTCTCCTCTTCTTCCG
GTATCACCATGACCATCACGCTTGACCTCGAAGGTAGATGACAAAGCACG
ACGCGACCGTCCCTGATTCCACAGATCCCACCGGTCGCGACGGCTGTGGC
GGTCCAGCTCGCGGAGATCGTCGCCCTGGCTGTCAAGGGTGCCTGAGGAC
GGTGCTGACACCGCCGAGGACGATTCGGTTCGGGAGGGGTCCGATTCGGT
GGAGCTCATACGAAGTGCGCGCGAACGGCGGACGCGGGGAGATCCCTCCA
AGGGTTGATACGTGGGAGAGGGGAGGGGGGCGAGGGCACACTGCGGCCGT
GGCCGAAACGCCCTCGACGCTGCTGCTCTTCACGCTGTCGATAACTCCGT
GCCGTGGCGACTTGGCCGGACAGCGTCCCTGGAGTTCC
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Coding sequence (CDS) from alignment at H-elongata_contig69011:1656..2243+

>mRNA_H-elongata_contig69011.14545.1 ID=mRNA_H-elongata_contig69011.14545.1|Name=mRNA_H-elongata_contig69011.14545.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig69011:1656..2243+ (Himanthalia elongata Himel1 dioecious)
ATGACAAAGCACGACGCGACCGTCCCTGATTCCACAGATCCCACCGGTCG
CGACGGCTGTGGCGGTCCAGCTCGCGGAGATCGTCGCCCTGGCTGTCAAG
GGTGCCTGAGGACGGTGCTGACACCGCCGAGGACGATTCGGTTCGGGAGG
GGTCCGATTCGGTGGAGCTCATACGAAGTGCGCGCGAACGGCGGACGCGG
GGAGATCCCTCCAAGGGTTGATACGTGGGAGAGGGGAGGGGGGCGAGGGC
ACACTGCGGCCGTGGCCGAAACGCCCTCGACGCTGCTGCTCTTCACGCTG
TCGATAACTCCGTGCCGTGGCGACTTGGCCGGACAGCGTCCCTGGAGTTC
CATGACAAAGCACGACGCGACCGTCCCTGATTCCACAGATCCCACCGGTC
GCGACGGCTGTGGCGGTCCAGCTCGCGGAGATCGTCGCCCTGGCTGTCAA
GGGTGCCTGAGGACGGTGCTGACACCGCCGAGGACGATTCGGTTCGGGAG
GGGTCCGATTCGGTGGAGCTCATACGAAGTGCGCGCGAACGGCGGACGCG
GGGAGATCCCTCCAAGGGTTGATACGTGGGAGAGGGGAGGGGGGCGAGGG
CACACTGCGGCCGTGGCCGAAACGCCCTCGACGCTGCTGCTCTTCACGCT
GTCGATAACTCCGTGCCGTGGCGACTTGGCCGGACAGCGTCCCTGGAGTT
CC
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