mRNA_H-elongata_contig69000.14543.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Match: A0A0A9Y7J8_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y7J8_LYGHE) HSP 1 Score: 107 bits (267), Expect = 1.200e-26 Identity = 54/134 (40.30%), Postives = 84/134 (62.69%), Query Frame = 1
Query: 40 WQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPAPAQASIRMVLSMIAALGWEARQLDIDMAYLEADVEKEIYVELPEAY--------RDSRKQVGLLKKAMYGLVHAGLLW 417
W +V+RP+GKTV+ +R VF+ K+ DG +E+ K RLVA+GF Q+ G HY E+ + +SIR V+++ A E QLD AYL ++E+EIY+E+P+ +D +V ++KA+YGL +G +W
Sbjct: 49 WTLVDRPEGKTVVGSRWVFRTKLKADGTVERRKARLVAKGFTQIPGTHYNETYTSVARLSSIRFVIALAAERNLELEQLDFTCAYLNGEIEEEIYMEVPKEIETILGRKTQDRENKVSRIQKALYGLKQSGRMW 182
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 114 bits (284), Expect = 1.300e-26 Identity = 56/128 (43.75%), Postives = 85/128 (66.41%), Query Frame = 1
Query: 34 GVWQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPAPAQASIRMVLSMIAALGWEARQLDIDMAYLEADVEKEIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLW 417
GV++ V RP+ + ++ ++ VFK K DG++EKYK RLVAQGF QV+GI Y E+ +P SIR++L++ A WE Q+D+ A+L ++E+EIY+++P ++ S V LKKA+YGL A W
Sbjct: 1025 GVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREW 1152
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI) HSP 1 Score: 112 bits (280), Expect = 4.410e-26 Identity = 55/140 (39.29%), Postives = 90/140 (64.29%), Query Frame = 1
Query: 1 IAREMDGQIPRGVWQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPAPAQASIRMVLSMIAALGWEARQLDIDMAYLEADVEKEIYVELPEAYRDSRK-QVGLLKKAMYGLVHAGLLW 417
+A+E++ W+VV+ P K + + ++K K + DG IE+YK RLVAQGF Q++GI Y+E SP S+R L+++ A WE Q+D++ A+L D+E+E+Y++LPE ++ + K +V L+K++YGL A W
Sbjct: 569 MAKEIEALETNQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEMFSPVAKMTSVRWFLAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 708
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI) HSP 1 Score: 111 bits (278), Expect = 6.630e-26 Identity = 55/140 (39.29%), Postives = 90/140 (64.29%), Query Frame = 1
Query: 1 IAREMDGQIPRGVWQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPAPAQASIRMVLSMIAALGWEARQLDIDMAYLEADVEKEIYVELPEAYRDSRK-QVGLLKKAMYGLVHAGLLW 417
+A+E++ W+VV+ P K + + ++K K + DG IE+YK RLVAQGF Q++GI Y+E+ SP S+R L++ A WE Q+D++ A+L D+E+E+Y++LPE ++ + K +V L+K++YGL A W
Sbjct: 100 MAKEIEALETNQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 239
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Match: A0A117NI32_PICGL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Picea glauca TaxID=3330 RepID=A0A117NI32_PICGL) HSP 1 Score: 107 bits (266), Expect = 8.320e-26 Identity = 53/141 (37.59%), Postives = 87/141 (61.70%), Query Frame = 1
Query: 1 IAREMDGQIPRGVWQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPAPAQASIRMVLSMIAALGWEARQLDIDMAYLEADVEKEIYVELPEAYRDSRKQ--VGLLKKAMYGLVHAGLLW 417
+ E + VW++V RP+GK V++++ +FK K DG I KYK R VA+GF Q +G++YEE+ +P SIR ++++ + +G + Q+D+ A+L +E+E+Y+E P+ + K+ V LKKA+YGL A W
Sbjct: 66 MVEEYQSIMKNDVWEIVPRPEGKPVVTSKWIFKIKHTADGSIYKYKARFVARGFSQTEGVYYEETFAPDARYTSIRSIIAIASVMGRKLHQMDVKTAFLNGVIEEEVYIEQPQGFESHGKESHVCRLKKALYGLKQAPRAW 206
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Match: A5BCC7_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BCC7_VITVI) HSP 1 Score: 110 bits (276), Expect = 1.550e-25 Identity = 55/140 (39.29%), Postives = 89/140 (63.57%), Query Frame = 1
Query: 1 IAREMDGQIPRGVWQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPAPAQASIRMVLSMIAALGWEARQLDIDMAYLEADVEKEIYVELPEAYRDSRK-QVGLLKKAMYGLVHAGLLW 417
+A+E++ W+VV+ P K + + ++K K + DG IE+YK RLVAQGF Q++GI Y+E SP S+R L++ A WE Q+D++ A+L D+E+E+Y++LPE ++ + K +V L+K++YGL A W
Sbjct: 823 MAKEIEALETNQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEXFSPVAKMTSVRCFLAVXVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 962
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Match: UPI00192EECC5 (uncharacterized protein LOC120294339 n=1 Tax=Eucalyptus grandis TaxID=71139 RepID=UPI00192EECC5) HSP 1 Score: 107 bits (267), Expect = 4.120e-25 Identity = 52/139 (37.41%), Postives = 85/139 (61.15%), Query Frame = 1
Query: 1 IAREMDGQIPRGVWQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPAPAQASIRMVLSMIAALGWEARQLDIDMAYLEADVEKEIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLW 417
+ EM G W++V+ P+GK ++ + VF K DG +E+YK RLVA+GF Q G+ Y+E+ +P S+R++LS+ AA W QLD+ A+L D+E+E+++ LP + ++ +V LKK++YGL + W
Sbjct: 3 VEDEMLALKKNGTWKLVDAPEGKKIVGCKWVFTVKCKLDGSVERYKTRLVAKGFTQTYGVDYQETFAPVAKINSVRILLSLAAAFDWPLHQLDVKNAFLNGDLEEEVFMSLPPGFAETEGKVCRLKKSLYGLKQSPRAW 141
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Match: A5BDW5_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=16 Tax=Vitis vinifera TaxID=29760 RepID=A5BDW5_VITVI) HSP 1 Score: 102 bits (255), Expect = 4.210e-25 Identity = 54/138 (39.13%), Postives = 83/138 (60.14%), Query Frame = 1
Query: 10 EMDGQIPRGVWQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPAPAQASIRMVLSMIAALGWEARQLDIDMAYLEADVEKEIYVELPEAY--RDSRKQVGLLKKAMYGLVHAGLLW 417
EM VW +V+ P G + + VFK K D G IE+YK RLVA+GF Q +GI Y E+ SP + S+R++L+++A E +Q+D+ A+L ++E+E+Y++ PE + D + V LKK++YGL A W
Sbjct: 4 EMSSMKCNDVWDLVDLPNGVKTIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGELEEEVYMKQPEGFPSSDGEQLVSKLKKSIYGLKQASRQW 141
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Match: A0A401H317_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H317_9APHY) HSP 1 Score: 108 bits (271), Expect = 7.190e-25 Identity = 57/138 (41.30%), Postives = 86/138 (62.32%), Query Frame = 1
Query: 4 AREMDGQIPRGVWQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPAPAQASIRMVLSMIAALGWEARQLDIDMAYLEADVEKEIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLW 417
A E+ + ++ VERP+ + V+ + VFK K DG IEKYK RLVA+GF QV+G+ + E+ +P AS+R +L++ A L E Q+D+ A+L D+++EIY+++P +R S V L KA+YGL AG W
Sbjct: 887 AEELHAFVKAELYDEVERPQNRKVIDCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFRRSNSLVWKLNKALYGLKQAGREW 1024
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Match: A0A401H123_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H123_9APHY) HSP 1 Score: 108 bits (271), Expect = 7.210e-25 Identity = 56/138 (40.58%), Postives = 86/138 (62.32%), Query Frame = 1
Query: 4 AREMDGQIPRGVWQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPAPAQASIRMVLSMIAALGWEARQLDIDMAYLEADVEKEIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLW 417
A E+ + ++ VERP+ + V+ + VFK K DG IEKYK RLVA+GF QV+G+ + E+ +P AS+R +L++ A L E Q+D+ A+L D+++EIY+++P +R S + L KA+YGL AG W
Sbjct: 623 AEELHAFVKAELYDKVERPRNRKVIDCKWVFKIKRGLDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPSGFRRSNSLIWKLNKALYGLKQAGREW 760 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig69000.14543.1 >prot_H-elongata_contig69000.14543.1 ID=prot_H-elongata_contig69000.14543.1|Name=mRNA_H-elongata_contig69000.14543.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp MDGQIPRGVWQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGFback to top mRNA from alignment at H-elongata_contig69000:1489..1908- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig69000.14543.1 ID=mRNA_H-elongata_contig69000.14543.1|Name=mRNA_H-elongata_contig69000.14543.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=420bp|location=Sequence derived from alignment at H-elongata_contig69000:1489..1908- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig69000:1489..1908- >mRNA_H-elongata_contig69000.14543.1 ID=mRNA_H-elongata_contig69000.14543.1|Name=mRNA_H-elongata_contig69000.14543.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig69000:1489..1908- (Himanthalia elongata Himel1 dioecious)back to top |