mRNA_H-elongata_contig68955.14539.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68955.14539.1
Unique NamemRNA_H-elongata_contig68955.14539.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig68955.14539.1 vs. uniprot
Match: D8LP23_ECTSI (Thiamine monophosphate synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LP23_ECTSI)

HSP 1 Score: 600 bits (1548), Expect = 6.000e-211
Identity = 308/413 (74.58%), Postives = 350/413 (84.75%), Query Frame = 1
Query:    1 TTSGSRLIDDRGAEARMVERVFPRATMITPNLLEAEALIGRSLRTPEDVEEGAAELLASSRAGGVLIKGGHTDSS---AGNSKSS---RYAQDYWTDGTSGGKFWLTSPRIDNDNTHGTGCSLSSAAAACMARGLDPTDAIVVAKAYVTQGIQAARRLGQGPGPVAHTGWPSRADCFPWVTATAQTGAGERPEAFPRCHEDWGLYPVVNTAEWVEKLLSFGVRDIQLRIKGATPDALNAEVARAERACRKA-------GGRLWVNDFWRTAVQHGTYGVHLGQEDLQAEGGEALRAISVAGLRLGVSTHSYLELARAAAVRPSYVSLGPVFETRSKTVEFSPRGPELVRVWKALVDVPLIVIGGISLETAPKARRHVLEAGANGIAVISAVTEADDVSEAVQRWNAVFEANRR 1200
            +TSGSRL+ + GAEA M ERVFPRATMITPNL+EAE L+GRSLRTP DVE GAA LLASS AGGVLIKGGH++      G  + S   RY+QDYWTDGT GG FWLT+PR+D+D+THGTGC+LSSAAAAC+A+GLDP D++V+AKAYVTQGI+ ARR G+GPGPVAHTGWPSRADCFPWVTATA+ GAG RPEAFP+CH+DWGLYPVV TAEWVEKLLS GVRDIQLR+KGA+P+AL+AEVARA +ACR +       GGRLWVNDFWR AV+HG YGVHLGQEDL+A GGEAL AIS AGLRLG+STHSYLELARA AVRPSY+SLGPVFET SK V FSPRG  LV  W+ALVDVPLI IGGISLE AP+    VLEAGA+ IAVISA+T+ADDV EAV++W+  FEA RR
Sbjct:  160 STSGSRLLPE-GAEALMKERVFPRATMITPNLIEAEVLLGRSLRTPADVEAGAASLLASSAAGGVLIKGGHSEDEREPGGADRPSARQRYSQDYWTDGTPGGSFWLTTPRVDSDDTHGTGCTLSSAAAACLAKGLDPADSVVLAKAYVTQGIRVARRFGKGPGPVAHTGWPSRADCFPWVTATAEGGAGGRPEAFPKCHDDWGLYPVVETAEWVEKLLSLGVRDIQLRVKGASPEALDAEVARAAQACRDSAAGAGGGGGRLWVNDFWRAAVRHGAYGVHLGQEDLEAGGGEALSAISKAGLRLGLSTHSYLELARATAVRPSYISLGPVFETTSKKVAFSPRGAVLVGAWRALVDVPLIAIGGISLERAPE----VLEAGADSIAVISAITKADDVEEAVRQWDTAFEARRR 567          
BLAST of mRNA_H-elongata_contig68955.14539.1 vs. uniprot
Match: A0A835ZKL9_9STRA (Thiamine monophosphate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKL9_9STRA)

HSP 1 Score: 427 bits (1098), Expect = 6.740e-144
Identity = 234/398 (58.79%), Postives = 287/398 (72.11%), Query Frame = 1
Query:    1 TTSGSRLIDDRGAEARMVERVFPRATMITPNLLEAEALIGRSLRTPEDVEEGAAELLASSRAGGVLIKGGHTDSSAGNSKSSRYAQDYWTDGTSGGKFWLTSPRIDNDNTHGTGCSLSSAAAACMARGLDPTDAIVVAKAYVTQGIQAARRLGQGPGPVAHTGWPSRADCFPWVTATAQTGAGERPEAFPRCHEDWGLYPVVNTAEWVEKLLSFGVRDIQLRIKGATPDALNAEVARAERACRKAGGRLWVNDFWRTAVQHGTYGVHLGQEDLQAEGG-EALRAISVAGLRLGVSTHSYLELARAAAVRPSYVSLGPVFETRSKTVEFSPRGPELVRVWKALVD--VPLIVIGGISLETAPKARRHVLEAGANGIAVISAVTEADDVSEAVQRWNAVF 1185
            +TSGS L+D   A+A++   +FPR+T+ITPN LEAEAL+GR LR+  DVE  A +LL S+    VLIKGGH D      +S   AQD+WTDG      WL+SPR  + +THGTGC+LS+A AAC+A+G D  DA+ + KAYVT GI AARRLG GPGPVAHTGWP++    PW+T TA+ G  +RPE  P CH DWGLYPVV++AEWV +L+  GVRD+QLR+KG +  AL  E+ARA+     AG RLWVNDFWR AV  G YGVH+GQEDLQ +G  E   A++ AG RLG+STHSY ELARA AVRPSY+SLGPVF T SK V+F+PRG E VR W+ L+   VPLI IGGI+LE AP     VL AGA GIAVI+AVT+A DV+ AV  W A++
Sbjct:  111 STSGSSLMDP-AAKAKLTAAIFPRSTIITPNKLEAEALLGRELRSARDVERAARDLL-STGVRSVLIKGGHHD------ESGALAQDFWTDGERA--LWLSSPRARHADTHGTGCTLSAAIAACLAQGYDACDAVTIGKAYVTAGIGAARRLGAGPGPVAHTGWPAQHAAMPWLTETAEQGH-DRPE-LPPCHRDWGLYPVVDSAEWVGRLVGMGVRDVQLRVKGMSGGALEGEIARAQELSAAAGARLWVNDFWREAVACGAYGVHMGQEDLQEQGPFEVGFALAAAGTRLGISTHSYAELARALAVRPSYISLGPVFATASKDVQFAPRGAEEVRRWRNLIPPHVPLIAIGGITLERAP----GVLAAGAEGIAVIAAVTKAPDVASAVAEWAALW 492          
BLAST of mRNA_H-elongata_contig68955.14539.1 vs. uniprot
Match: W7TKQ7_9STRA (Hydroxymethylpyrimidine kinase phosphomethylpyrimidine kinase thiamine-phosphate diphosphorylase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKQ7_9STRA)

HSP 1 Score: 400 bits (1029), Expect = 3.010e-132
Identity = 214/410 (52.20%), Postives = 276/410 (67.32%), Query Frame = 1
Query:    1 TTSGSRLIDDRGAEARMVERVFPRATMITPNLLEAEALIGRSLRTPEDVEEGAAELLASSRAGGVLIKGGHTDSSAGNSKSSR--------YAQDYWTDGTSGGKFWLTSPRIDNDNTHGTGCSLSSAAAACMARGLDPTDAIVVAKAYVTQGIQAARRLGQGPGPVAHTGWPSRADCFPWVTATAQTGAGERPEAFPRCHEDWGLYPVVNTAEWVEKLLSFGVRDIQLRIKGATPDALNAEVARAERACRKAGGRLWVNDFWRTAVQHGTYGVHLGQED---LQAEGGEALRAISVAGLRLGVSTHSYLELARAAAVRPSYVSLGPVFETRSKTVEFSPRGPELVRVWKALVDVPLIVIGGISLETAPKARRHVLEAGANGIAVISAVTEADDVSEAVQRWNAVFEANR 1197
            T+SGS L D+   +A M++ +FPRAT+ITPN  EAE L+G +LRTPED+E  A +LLA  ++G VL+KGGH     G  +S+          AQDY  +       W+TSPR++N NTHGTGC+LSSA AA +A+ L   DA+V+AKAYV+QGI+AAR+LG+GPGPV  TGWP+ A  FPWVT+  + G+ +RP  F  C  D GLY  V +A WV++LL  GV+DIQLRIK      L  EVA A  +CRKA  RLWVND+W  AV++  YG+H+GQED   L       L A+   G+RLGVSTH++ EL RA A+RPSY+SLGP+F T SK V F P+G   +R W+ LVDVPL+ IGGI LE A   R    +AGA+GI VISA+T+A DV++AVQ W AV    +
Sbjct:  181 TSSGSVLQDELARQA-MIDTIFPRATLITPNKHEAEMLVGYTLRTPEDLERAAHDLLAMGKSGAVLVKGGHALDGLGGERSASGEGLFDAAVAQDYLLESNGKSGLWITSPRLENQNTHGTGCTLSSAVAAFLAQDLPLVDAVVLAKAYVSQGIRAARKLGRGPGPVQQTGWPASASDFPWVTSRVEEGSKKRPGPFAECERDMGLYACVASAVWVQRLLELGVKDIQLRIKDRPALELEHEVAEAAESCRKANARLWVNDYWELAVRYKAYGLHVGQEDMDRLMNSPDLPLVAVKNEGIRLGVSTHTFAELGRAIALRPSYISLGPIFSTTSKKVRFGPQGLARLRQWRHLVDVPLVAIGGIGLEAAQGVR----DAGADGICVISALTQASDVAQAVQAWRAVLRTGK 585          
BLAST of mRNA_H-elongata_contig68955.14539.1 vs. uniprot
Match: A0A6V1SBN4_HETAK (Thiamine phosphate synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SBN4_HETAK)

HSP 1 Score: 312 bits (799), Expect = 6.150e-102
Identity = 161/273 (58.97%), Postives = 197/273 (72.16%), Query Frame = 1
Query:  373 MARGLDPTDAIVVAKAYVTQGIQAARRLGQGPGPVAHTGWPSRADCFPWVTATAQTGAGERPEAFPRCH--EDWGLYPVVNTAEWVEKLLSFGVRDIQLRIKGATPDALNAEVARAERACRKAGGRLWVNDFWRTAVQHGTYGVHLGQEDLQAEGGEALRAISVAGLRLGVSTHSYLELARAAAVRPSYVSLGPVFETRSKTVEFSPRGPELVRVWKALVDVPLIVIGGISLETAPKARRHVLEAGANGIAVISAVTEADDVSEAVQRWNAVF 1185
            MA+G D  DA+ +AKAY+TQG+ AA RLG GPGPVAHT WP      PW T+TA  G   RPE FP C   E+WGLYP+V++A+WVE+L+  GV+DIQ+RIK    D +   V RA+ AC  AG RLWVND WR AV+H TYG HLGQEDL  E  E +  +S AG+RLG+STH Y ELARA AVRPSYVSLGP+++T SK V F+PRG E ++ W+ LVDVPLI IGGI+ E APK    V+EAGA+ IAVISA+T+ +DV  A+  WN VF
Sbjct:    1 MAQGFDIEDAVTIAKAYITQGLGAAARLGSGPGPVAHTSWPCDPGALPWATSTAARGQ-HRPE-FPPCQAPEEWGLYPIVDSADWVERLVLMGVKDIQIRIKDKGDDEIMEAVGRAQAACSAAGARLWVNDHWRAAVRHKTYGCHLGQEDLM-ENLEGIDELSAAGIRLGLSTHCYSELARAVAVRPSYVSLGPIYQTFSKQVRFAPRGLENLKQWRKLVDVPLIAIGGITYENAPK----VIEAGADSIAVISAITKENDVQAAIDMWNKVF 266          
BLAST of mRNA_H-elongata_contig68955.14539.1 vs. uniprot
Match: A0A8A4TWK8_9BACT (Thiamine-phosphate synthase n=1 Tax=Sulfidibacter corallicola TaxID=2818388 RepID=A0A8A4TWK8_9BACT)

HSP 1 Score: 320 bits (820), Expect = 6.450e-102
Identity = 187/396 (47.22%), Postives = 248/396 (62.63%), Query Frame = 1
Query:    4 TSGSRLIDDRGAEARMVERVFPRATMITPNLLEAEALIGRSLRTPEDVEEGAAELLASSRAGGVLIKGGHTDSSAGNSKSSRYAQDYWTDGTSGGKFWLTSPRIDNDNTHGTGCSLSSAAAACMARGLDPTDAIVVAKAYVTQGIQAARRLGQGPGPVAHTGWPSRADCFPWVTATAQTGAGERPEAFPRCH-EDWGLYPVVNTAEWVEKLLSFGVRDIQLRIKGATPDALNAEVARAERACRKAGGRLWVNDFWRTAVQHGTYGVHLGQEDLQAEGGEALRAISVAGLRLGVSTHSYLELARAAAVRPSYVSLGPVFETRSKTVEFSPRGPELVRVWKALVDVPLIVIGGISLETAPKARRHVLEAGANGIAVISAVTEADDVSEAVQRWNAVFE 1188
            TSGS L+    A + MVE +FPRA +ITPNL EAEAL+GR LRTP  VE  A +L A   A  VLIKGGH D+         ++QD+++DGT+   FWLT PRI+  +THG+GC+LS+A AA +A G +  DA+V+ KA++T  I+ AR  G GPGPV    WP R    PW+T+ A++G       FP C     G YP+V+   W+++LL  GV  IQLRIK  T  AL  E+ RA    +    RL+VND+W  A++   YGVHLGQEDL       L  +  AGLRLGVSTH Y E+ARA AV PSY+++GPVF T++K + F+P+G   +  W+  +  PL+ IGGI L    +    VL AGA+ IAVI+A+TEA+D   A ++W   FE
Sbjct:  126 TSGSSLMAPE-ARSVMVETLFPRADLITPNLPEAEALLGRRLRTPAQVEHAAVQLRALG-ARAVLIKGGHGDAP--------FSQDHFSDGTA--SFWLTGPRIETPHTHGSGCTLSAAIAAAVALGYELADALVIGKAFITAAIRDARPQGSGPGPVLQGAWPEREADLPWMTSDAESGRNRL--RFPDCGPRQLGFYPIVDRVAWMKRLLPLGVSTIQLRIKDLTGAALENEIHRAVELSKHYNCRLFVNDYWELALRFDAYGVHLGQEDLPHAD---LARLCKAGLRLGVSTHCYYEVARALAVHPSYMAIGPVFSTQTKVMRFAPQGLAALARWRRSLGFPLVAIGGIKLNHVDR----VLAAGADSIAVITAITEAEDPEGAARQWLQCFE 500          
BLAST of mRNA_H-elongata_contig68955.14539.1 vs. uniprot
Match: A0A7T4R1J5_9GAMM (Bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase n=1 Tax=Spongiibacter nanhainus TaxID=2794344 RepID=A0A7T4R1J5_9GAMM)

HSP 1 Score: 317 bits (813), Expect = 6.260e-101
Identity = 186/394 (47.21%), Postives = 247/394 (62.69%), Query Frame = 1
Query:    1 TTSGSRLIDDRGAEARMVERVFPRATMITPNLLEAEALIGRSLRTPEDVEEGAAELLASSRAGGVLIKGGHTDSSAGNSKSSRYAQ--DYWTDGTSGGKFWLTSPRIDNDNTHGTGCSLSSAAAACMARGLDPTDAIVVAKAYVTQGIQAARRLGQGPGPVAHTGWPSRADCFPWVTATAQTGAGERPEAFPRCHEDWGLYPVVNTAEWVEKLLSFGVRDIQLRIKGATPDALNAEVARAERACRKAGGRLWVNDFWRTAVQHGTYGVHLGQEDLQAEGGEALRAISVAGLRLGVSTHSYLELARAAAVRPSYVSLGPVFETRSKTVEFSPRGPELVRVWKALVD--VPLIVIGGISLETAPKARRHVLEAGANGIAVISAVTEADDVSEAVQR 1170
            +TSG  L++D G    +VE++ PRA ++TPNL EA+ L+GR +   E VE  AA+++A   A  VL+ GGH         S+R++Q  DYWTDG  G  FWL+ P ID  NTHGTGC+LSSA AA MA+G D  DA+V+AKAYV+QG++ A +LG GPGPV H GWP R   FP ++      A     AF  C    GLYPVV TA+WVE LL +GV+ +QLR K    + L AE+ RA    R+   R+++ND W+ A+  G YGVHLGQ DL +     L AI+ AGLRLGVSTH Y E+ARA  +RPSY+++GP+F T SK + F P+G   +R W  L+     L  IGGI  + AP+    VL  G    A+I+A+T ADD  + V++
Sbjct:  113 STSGGELMED-GVSEVLVEKLLPRADLLTPNLSEAQILLGREINGLEQVERAAADIVAMG-ARSVLLTGGHL--------STRHSQRHDYWTDGQDG--FWLSGPNIDTLNTHGTGCTLSSAIAALMAKGFDLRDALVIAKAYVSQGLRMAVQLGGGPGPVGHVGWPQRLADFPCISRDL---ASSVTPAFASCDGPLGLYPVVETADWVETLLQWGVKTVQLRAKDLQGERLEAEIQRAVALGREHQARVFINDHWQQAIAAGAYGVHLGQGDLDSAD---LAAIAAAGLRLGVSTHCYYEVARAHGLRPSYIAIGPIFPTTSKDMPFGPQGVNQLRRWVNLLGPHYTLTAIGGIDGKRAPE----VLSTGVGSCAMITAITLADDPRQIVEQ 484          
BLAST of mRNA_H-elongata_contig68955.14539.1 vs. uniprot
Match: A0A8J7Q2H9_9BACT (Thiamine-phosphate synthase n=1 Tax=Acanthopleuribacter pedis TaxID=442870 RepID=A0A8J7Q2H9_9BACT)

HSP 1 Score: 316 bits (809), Expect = 2.640e-100
Identity = 181/394 (45.94%), Postives = 244/394 (61.93%), Query Frame = 1
Query:    4 TSGSRLIDDRGAEARMVERVFPRATMITPNLLEAEALIGRSLRTPEDVEEGAAELLASSRAGGVLIKGGHTDSSAGNSKSSRYAQDYWTDGTSGGKFWLTSPRIDNDNTHGTGCSLSSAAAACMARGLDPTDAIVVAKAYVTQGIQAARRLGQGPGPVAHTGWPSRADCFPWVTATAQTGAGERPEAFPRCHED-WGLYPVVNTAEWVEKLLSFGVRDIQLRIKGATPDALNAEVARAERACRKAGGRLWVNDFWRTAVQHGTYGVHLGQEDLQAEGGEALRAISVAGLRLGVSTHSYLELARAAAVRPSYVSLGPVFETRSKTVEFSPRGPELVRVWKALVDVPLIVIGGISLETAPKARRHV---LEAGANGIAVISAVTEADDVSEAVQRW 1173
            TSG  L+     ++ + E + PRAT++TPNL EAE L+GR+L+  ED+E    +LLA      V IKGGH   +         AQDYWTDGT     WLTS R    N HG+GC+LSSA AA +A G +  DA+V+AKA+V Q I+ A+ LG G  PV   GWP      PW+TATA+ G       FP C  D  G YP+V++  W+E+LL  GV+  QLR+K     AL  E+ RA +  R++  RL++ND+W+ A+  G YGVHLGQEDLQ      L AI+ AGLRLGVSTH Y E+ARA A+RPSY+++GP+F T++K + F+P+G E +R W+  +  PL+ IGGI        + H+   L AGA+ +AVI+AVTEA+D     + W
Sbjct:  123 TSGDVLLQSDAIQS-LRELLIPRATVLTPNLPEAETLLGRTLKNTEDIESAGRDLLALGSQS-VWIKGGHGSGAT--------AQDYWTDGTQ--SLWLTSERHPQGNNHGSGCTLSSALAAALALGYEIRDALVIAKAFVGQSIRLAQPLGAGSAPVHQGGWPEFEGDLPWLTATAEEGNNRL--RFPDCGPDRLGFYPIVDSCAWLERLLPLGVKTCQLRVKALRGQALVHEIRRAVQIARQSSCRLFINDYWQIAIDEGAYGVHLGQEDLQTAD---LAAIAQAGLRLGVSTHCYWEVARALALRPSYMAVGPIFTTQTKDMRFAPQGIEALRRWRRSLSYPLVAIGGIK-------KHHIATLLSAGADSLAVITAVTEAEDPEAETRHW 492          
BLAST of mRNA_H-elongata_contig68955.14539.1 vs. uniprot
Match: A0A2D7WK18_9GAMM (Phosphomethylpyrimidine kinase n=3 Tax=Spongiibacter TaxID=630749 RepID=A0A2D7WK18_9GAMM)

HSP 1 Score: 315 bits (808), Expect = 2.870e-100
Identity = 178/385 (46.23%), Postives = 244/385 (63.38%), Query Frame = 1
Query:    1 TTSGSRLIDDRGAEARMVERVFPRATMITPNLLEAEALIGRSLRTPEDVEEGAAELLASSRAGGVLIKGGHTDSSAGNSKSSRYAQDYWTDGTSGGKFWLTSPRIDNDNTHGTGCSLSSAAAACMARGLDPTDAIVVAKAYVTQGIQAARRLGQGPGPVAHTGWPSRADCFPWVTATAQTGAGERPEAFPRCHEDWGLYPVVNTAEWVEKLLSFGVRDIQLRIKGATPDALNAEVARAERACRKAGGRLWVNDFWRTAVQHGTYGVHLGQEDLQAEGGEALRAISVAGLRLGVSTHSYLELARAAAVRPSYVSLGPVFETRSKTVEFSPRGPELVRVWKALVD--VPLIVIGGISLETAPKARRHVLEAGANGIAVISAVTEADD 1149
            +TSG +L++D  +EA ++E++ PRA ++TPN+ EAE L+ R + +P DVE  A +++    A  VL+ GGH  +  G         DYWTDG SG  FWL+   ID  NTHGTGC+LSSA AA +ARG +  DA+V+AKAYV+QG++ A +LG GPGPV H GWP R + FP ++           +AFP C  + GLYPVV++ EW+E+LL  GV+ IQLRIK      L+ E+ RA    ++   R+++ND+WR A+  G YGVHLGQEDL       + AI+ AGLRLGVSTHSY E+ARA A+ PSY+++GPV+ T SK + F  +G   ++ W  ++     L  IGGI    AP     VL  G    A+I+A+TEADD
Sbjct:  112 STSGGQLMEDGVSEA-LIEKILPRADLLTPNISEAETLLNREINSPADVERAAQDIVVLG-ARSVLLTGGHLSTDDG------CRHDYWTDGESG--FWLSGENIDTLNTHGTGCTLSSAIAALIARGYELADALVIAKAYVSQGLRLAVQLGGGPGPVVHLGWPQRLEDFPRLSRQLPAAP---IQAFPDCGGELGLYPVVDSTEWLERLLRAGVKTIQLRIKNPEQSNLDEEIRRAVALGQQYSARVFINDYWRQAIDAGAYGVHLGQEDLDIAD---IGAIAAAGLRLGVSTHSYYEIARAHALSPSYIAIGPVYPTTSKVMRFGAQGLTQLKRWVDILSPSYTLTAIGGIDRRRAP----DVLATGVGSCAMITAITEADD 476          
BLAST of mRNA_H-elongata_contig68955.14539.1 vs. uniprot
Match: I2JG64_9GAMM (Thiamine-phosphate synthase n=3 Tax=Spongiibacteraceae TaxID=1706375 RepID=I2JG64_9GAMM)

HSP 1 Score: 315 bits (806), Expect = 7.030e-100
Identity = 178/391 (45.52%), Postives = 255/391 (65.22%), Query Frame = 1
Query:   22 IDDRGAEARMVERVFPRATMITPNLLEAEALIGRSLRTPEDVEEGAAELLASSRAGGVLIKGGHTDSSAGNSKSSRYAQDYWTDGTSGGKFWLTSPRIDNDNTHGTGCSLSSAAAACMARGLDPTDAIVVAKAYVTQGIQAARRLGQGPGPVAHTGWPSRADCFPWVTATAQTGAGERPEAFPRCHEDWGLYPVVNTAEWVEKLLSFGVRDIQLRIKGATPDALNAEVARAERACRKAGGRLWVNDFWRTAVQHGTYGVHLGQEDLQAEGGEALRAISVAGLRLGVSTHSYLELARAAAVRPSYVSLGPVFETRSKTVEFSPRGPELVRVWKALV--DVPLIVIGGISLETAPKARRHVLEAGANGIAVISAVTEADDVSEAVQRWNAVFE 1188
            + D    A ++E++ PR  ++TPNL EAE+++ R ++  +DVE  AA+++A   A  VLIKGGH   +A N++      DYWTDG  G  FWL+   +D  NTHGTGC+LSSA AA +ARG    DA+V+AKAYV+QG++   +LG GPGPVAH GWP +   FP ++      +G RP  FP C  + GLYPVV++A+W+++LL+ GV+ IQLR+KG   +AL  EVARA    R+   R+++NDFW+ A+  G YGVHLGQEDL       + AI+ AGLRLGVSTH+Y E+ARA  ++PSY+++GPV+ T SK + +SP+G   +R W  ++  +  L  IGGI ++ A    + VL  G   IA+ISA+T+A++    V    A+ +
Sbjct:  118 LTDGNLSACLIEKLLPRCDLLTPNLSEAESILNRRIKGLDDVERAAADIVALG-ARAVLIKGGHL--TARNNQ----RHDYWTDGIDG--FWLSGANVDTLNTHGTGCTLSSAIAASLARGYALPDALVIAKAYVSQGLRMGVQLGGGPGPVAHVGWPQQLIDFPSLSRRLPQ-SGPRP-VFPSCEGELGLYPVVDSADWIKRLLACGVKTIQLRVKGLQGEALRKEVARAVALGREYSARVFINDFWQLAIAEGAYGVHLGQEDLDIAD---IEAIASAGLRLGVSTHTYYEVARAHGLQPSYIAIGPVYRTTSKDMPYSPQGLMQLRRWVGVLGDNYTLTAIGGIDIKRA----KEVLLTGVKSIAMISAITQAENPEAVVAELMAMID 490          
BLAST of mRNA_H-elongata_contig68955.14539.1 vs. uniprot
Match: UPI001445A6B2 (thiamine phosphate synthase n=1 Tax=Spongiibacter sp. KMU-166 TaxID=2721624 RepID=UPI001445A6B2)

HSP 1 Score: 314 bits (804), Expect = 1.530e-99
Identity = 183/393 (46.56%), Postives = 245/393 (62.34%), Query Frame = 1
Query:    1 TTSGSRLIDDRGAEARMVERVFPRATMITPNLLEAEALIGRSLRTPEDVEEGAAELLASSRAGGVLIKGGHTDSSAGNSKSSRYAQDYWTDGTSGGKFWLTSPRIDNDNTHGTGCSLSSAAAACMARGLDPTDAIVVAKAYVTQGIQAARRLGQGPGPVAHTGWPSRADCFPWVTATAQTGAGERPEAFPRCHEDWGLYPVVNTAEWVEKLLSFGVRDIQLRIKGATPDALNAEVARAERACRKAGGRLWVNDFWRTAVQHGTYGVHLGQEDLQAEGGEALRAISVAGLRLGVSTHSYLELARAAAVRPSYVSLGPVFETRSKTVEFSPRGPELVRVWKALVD--VPLIVIGGISLETAPKARRH-VLEAGANGIAVISAVTEADDVSEAVQR 1170
            +TSG  LI+D G    ++++V P A +ITPN+ EA+ L+GR +    DVE  A +L+A   A  VL+ GGH  +        +   DYWTDG  G  +WL+ P I   NTHGTGC+LSSA AA MARG +  DA+V+AKAYV+QG++ A +LG GPGPVAHTGWP   D  P +    + G     E FP C  + GLYPVV+++ W+E+LL  GV  IQLRIK      L  E+ RA    R+ G R+++ND+W+ A++ G YGVHLGQEDL       L AI  AGLRLGVSTHSY E+ARA A+RPSY++LGP++ T+SK + F P+G   ++ W  ++     L  IGGI++     AR H VL  G    A+I+A+T+A D    V R
Sbjct:  112 STSGGDLIED-GVSEVLMDKVIPYADLITPNVDEAQVLLGRKINGLADVERAAQDLVAMG-ANSVLLTGGHLPADG------QQRHDYWTDGIDG--YWLSGPNIRTMNTHGTGCTLSSAIAALMARGYELIDALVIAKAYVSQGLRMAVQLGGGPGPVAHTGWPQSVDDLPCLQRKLEIGV----EPFPDCDGELGLYPVVDSSAWIERLLKCGVTTIQLRIKNRQAPNLRGEIFRAVALGRQYGARVFINDYWQIAIEAGAYGVHLGQEDLDIAD---LAAIRRAGLRLGVSTHSYYEVARAHALRPSYIALGPIYPTQSKIMRFGPQGVNQLKRWIDMLSSRYTLTAIGGINV-----ARAHDVLATGIGSCAMITAITQAADPEAVVAR 482          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68955.14539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LP23_ECTSI6.000e-21174.58Thiamine monophosphate synthase n=2 Tax=Ectocarpus... [more]
A0A835ZKL9_9STRA6.740e-14458.79Thiamine monophosphate synthase n=1 Tax=Tribonema ... [more]
W7TKQ7_9STRA3.010e-13252.20Hydroxymethylpyrimidine kinase phosphomethylpyrimi... [more]
A0A6V1SBN4_HETAK6.150e-10258.97Thiamine phosphate synthase n=1 Tax=Heterosigma ak... [more]
A0A8A4TWK8_9BACT6.450e-10247.22Thiamine-phosphate synthase n=1 Tax=Sulfidibacter ... [more]
A0A7T4R1J5_9GAMM6.260e-10147.21Bifunctional hydroxymethylpyrimidine kinase/phosph... [more]
A0A8J7Q2H9_9BACT2.640e-10045.94Thiamine-phosphate synthase n=1 Tax=Acanthopleurib... [more]
A0A2D7WK18_9GAMM2.870e-10046.23Phosphomethylpyrimidine kinase n=3 Tax=Spongiibact... [more]
I2JG64_9GAMM7.030e-10045.52Thiamine-phosphate synthase n=3 Tax=Spongiibactera... [more]
UPI001445A6B21.530e-9946.56thiamine phosphate synthase n=1 Tax=Spongiibacter ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68955contigH-elongata_contig68955:752..3033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score605.5
Seed ortholog evalue1.8e-170
Seed eggNOG ortholog2880.D8LP23
KEGG rclassRC00002,RC00017,RC00224,RC00652,RC02795,RC02832
KEGG koko:K00877,ko:K02320,ko:K08267,ko:K12823
KEGG ReactionR00375,R00376,R00377,R00378,R02133,R03471,R04509,R09993
KEGG Pathwayko00230,ko00240,ko00730,ko01100,ko03030,ko03040,ko04150,ko05202,ko05205,map00230,map00240,map00730,map01100,map03030,map03040,map04150,map05202,map05205
KEGG ModuleM00127,M00261
GOsGO:0003674,GO:0003824,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008972,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.hydroxymethylpyrimidine kinase activity
EggNOG OGsCOG0351@1,KOG2598@2759
EC2.7.1.49,2.7.4.7,2.7.7.7,3.5.99.2,3.6.4.13
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03032,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionThiamine monophosphate synthase
Ec32 orthologEc-06_006870.1
Exons3
Model size1206
Cds size1206
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68955.14539.1prot_H-elongata_contig68955.14539.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68955 752..3033 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931086.3317475-CDS-H-elongata_contig68955:751..8681622931086.3317475-CDS-H-elongata_contig68955:751..868Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68955 752..868 -
1691679692.2782698-CDS-H-elongata_contig68955:751..8681691679692.2782698-CDS-H-elongata_contig68955:751..868Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68955 752..868 -
1622931086.3540378-CDS-H-elongata_contig68955:1529..19981622931086.3540378-CDS-H-elongata_contig68955:1529..1998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68955 1530..1998 -
1691679692.2886326-CDS-H-elongata_contig68955:1529..19981691679692.2886326-CDS-H-elongata_contig68955:1529..1998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68955 1530..1998 -
1622931086.3701825-CDS-H-elongata_contig68955:2413..30331622931086.3701825-CDS-H-elongata_contig68955:2413..3033Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68955 2414..3033 -
1691679692.298249-CDS-H-elongata_contig68955:2413..30331691679692.298249-CDS-H-elongata_contig68955:2413..3033Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68955 2414..3033 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68955.14539.1

>prot_H-elongata_contig68955.14539.1 ID=prot_H-elongata_contig68955.14539.1|Name=mRNA_H-elongata_contig68955.14539.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=402bp
TTSGSRLIDDRGAEARMVERVFPRATMITPNLLEAEALIGRSLRTPEDVE
EGAAELLASSRAGGVLIKGGHTDSSAGNSKSSRYAQDYWTDGTSGGKFWL
TSPRIDNDNTHGTGCSLSSAAAACMARGLDPTDAIVVAKAYVTQGIQAAR
RLGQGPGPVAHTGWPSRADCFPWVTATAQTGAGERPEAFPRCHEDWGLYP
VVNTAEWVEKLLSFGVRDIQLRIKGATPDALNAEVARAERACRKAGGRLW
VNDFWRTAVQHGTYGVHLGQEDLQAEGGEALRAISVAGLRLGVSTHSYLE
LARAAAVRPSYVSLGPVFETRSKTVEFSPRGPELVRVWKALVDVPLIVIG
GISLETAPKARRHVLEAGANGIAVISAVTEADDVSEAVQRWNAVFEANRR
A*
back to top

mRNA from alignment at H-elongata_contig68955:752..3033-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68955.14539.1 ID=mRNA_H-elongata_contig68955.14539.1|Name=mRNA_H-elongata_contig68955.14539.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2282bp|location=Sequence derived from alignment at H-elongata_contig68955:752..3033- (Himanthalia elongata Himel1 dioecious)
ACGACCAGCGGGTCGCGACTGATTGATGACAGAGGCGCGGAGGCGAGAAT GGTGGAGCGCGTCTTCCCGCGAGCAACGATGATCACGCCCAACCTCCTCG AAGCCGAGGCCCTGATCGGACGGAGCCTGCGAACGCCCGAAGACGTCGAA GAAGGGGCGGCGGAATTGCTAGCCTCCTCCCGAGCCGGAGGCGTGCTCAT CAAGGGAGGTCACACCGATAGCAGCGCGGGTAATAGCAAGAGCTCCCGTT ATGCCCAAGATTATTGGACTGACGGCACCTCTGGAGGAAAGTTCTGGCTC ACGTCGCCCAGAATCGACAACGACAACACCCATGGCACGGGGTGTTCGCT TTCCTCGGCAGCGGCGGCGTGCATGGCAAGGGGACTTGACCCCACCGACG CCATCGTTGTTGCGAAAGCGTACGTCACGCAGGGGATTCAAGCGGCGCGT AGGTTGGGGCAGGGGCCGGGCCCCGTGGCCCACACGGGCTGGCCCTCGCG CGCAGACTGTTTCCCCTGGGTTACCGCAACGGCGCAGACAGGGGCGGGCG AACGACCGGAGGCTTTTCCGCGTTGCCACGAGGACTGGGGACTTTACCCC GTGGTGAATACGGCAGAATGGTAAGGGAGGCGGGTGAACGGCAACTTGGG CGCAGAGACTGATGGATTCACGCGAGGCAAATGTGTCCGTGGGTTGTCGG TACACGCTCTGCTTTACCAGCGTCGCAAGTCAGTGAAGCGCTTCTATTGG TAAAATGTCGAGCGCGTCACGGAACCGTCCCCGCCCGCCCCCCTCCACGG GATGCTTTTGTTGGGTGGGAAAAGATGTACTTGTGTTCAACTCTCTTATG CAAGAAGGCCTACGCGGAATTCGATTCACCTTCGAGATTATTTTGTGTTT TTGTTTCGTTTGCGGTAATGTGGGAAAAAAAAAAAAGCCGTGCCGCACCT CGCCCACCCCCCTCAAAAATGTACATCAATTCGATACACACCCGACTCCG CCTCCCCGTCCCGCTCTTCCGCCACACCGAGCTAGGGTGGAGAAACTTCT TTCGTTCGGAGTACGAGATATCCAGCTGCGCATTAAGGGAGCCACCCCCG ATGCGCTCAACGCCGAGGTCGCAAGGGCGGAGCGAGCGTGTCGCAAAGCG GGCGGCCGACTCTGGGTGAACGACTTCTGGCGCACGGCAGTCCAGCACGG GACCTACGGGGTCCACCTTGGGCAGGAGGATTTGCAGGCTGAGGGCGGGG AGGCACTGCGCGCGATTTCGGTGGCTGGGCTTCGGCTGGGCGTCAGCACT CACTCGTACCTGGAGCTTGCCAGAGCCGCGGCGGTTCGCCCGAGCTACGT GTCGCTCGGACCCGTGTTCGAGACTCGGTCGAAGACGGTGGAGTTCTCCC CGAGGGGCCCGGAGCTCGTGAGGGTGTGGAAGGCGCTCGTGGACGTTCCT CTCATTGTCATCGGCGGCATCAGCCTCGAGACCGCTCCAAAGGCGAGGAG GCATGTTCATTTTTCGAGAAAGTGATAAATGTTTGTAGCTTGTGCGTCAG TTTTTCGTGCTTCAAGCAGGGGCGGGAGCCGAGATATTATTTTGTCAGTG TGTTTGGTGTTGGATTGGTGTTGGATTGGTGTTGGATTGGTGTCAGGCTA TGCATGTTTCGTCGCCGACGCTTAAGCTACACCCTGCTTCGCCAAGACTC TTTAGTAAGCAACTCGAGACTCGAGACTTGGCGTGAGCCTTCCTTTGGGT TCGTCTGGGTCTGCTTTGGTCGTCATTATCTCGCTTTTTCTTTCCCATGT GTTGCATCTGACACTCAATCAAGTATGCGGACGGGAAATGGGGAAATACC TCGTGGTTCATCAATTTGGGGGAGTGATAACTGTGACTACGTAGTCACGT CACAATTTAGTTTGTGACTACAGGAAAAAAACCTGCAAAAAACGTTAATT TCATGCAGAGTAAAATAGCCGTTTCTTAAAAACCTATATATACTGGCTGA CCCAACCTGCCCCCTAATCCTAACCCTAACCCTAACCCACACACACCTAC CCTTGGGCTCTGAGAACCCTAATTTGATGGCGGAAACCCCGGGGATGAAC TCTTATATGTCCCCGTAGTCACAAACTAAATTGTGACTATGTAGTAATCA ATTTCCCATCCTCAGGTCTTGGAGGCTGGGGCCAACGGTATCGCCGTGAT CTCGGCGGTGACCGAGGCAGACGACGTGAGCGAGGCCGTGCAACGATGGA ACGCTGTTTTCGAGGCCAACCGCCGAGCGTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig68955:752..3033-

>mRNA_H-elongata_contig68955.14539.1 ID=mRNA_H-elongata_contig68955.14539.1|Name=mRNA_H-elongata_contig68955.14539.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2412bp|location=Sequence derived from alignment at H-elongata_contig68955:752..3033- (Himanthalia elongata Himel1 dioecious)
ACGACCAGCGGGTCGCGACTGATTGATGACAGAGGCGCGGAGGCGAGAAT
GGTGGAGCGCGTCTTCCCGCGAGCAACGATGATCACGCCCAACCTCCTCG
AAGCCGAGGCCCTGATCGGACGGAGCCTGCGAACGCCCGAAGACGTCGAA
GAAGGGGCGGCGGAATTGCTAGCCTCCTCCCGAGCCGGAGGCGTGCTCAT
CAAGGGAGGTCACACCGATAGCAGCGCGGGTAATAGCAAGAGCTCCCGTT
ATGCCCAAGATTATTGGACTGACGGCACCTCTGGAGGAAAGTTCTGGCTC
ACGTCGCCCAGAATCGACAACGACAACACCCATGGCACGGGGTGTTCGCT
TTCCTCGGCAGCGGCGGCGTGCATGGCAAGGGGACTTGACCCCACCGACG
CCATCGTTGTTGCGAAAGCGTACGTCACGCAGGGGATTCAAGCGGCGCGT
AGGTTGGGGCAGGGGCCGGGCCCCGTGGCCCACACGGGCTGGCCCTCGCG
CGCAGACTGTTTCCCCTGGGTTACCGCAACGGCGCAGACAGGGGCGGGCG
AACGACCGGAGGCTTTTCCGCGTTGCCACGAGGACTGGGGACTTTACCCC
GTGGTGAATACGGCAGAATGACGACCAGCGGGTCGCGACTGATTGATGAC
AGAGGCGCGGAGGCGAGAATGGTGGAGCGCGTCTTCCCGCGAGCAACGAT
GATCACGCCCAACCTCCTCGAAGCCGAGGCCCTGATCGGACGGAGCCTGC
GAACGCCCGAAGACGTCGAAGAAGGGGCGGCGGAATTGCTAGCCTCCTCC
CGAGCCGGAGGCGTGCTCATCAAGGGAGGTCACACCGATAGCAGCGCGGG
TAATAGCAAGAGCTCCCGTTATGCCCAAGATTATTGGACTGACGGCACCT
CTGGAGGAAAGTTCTGGCTCACGTCGCCCAGAATCGACAACGACAACACC
CATGGCACGGGGTGTTCGCTTTCCTCGGCAGCGGCGGCGTGCATGGCAAG
GGGACTTGACCCCACCGACGCCATCGTTGTTGCGAAAGCGTACGTCACGC
AGGGGATTCAAGCGGCGCGTAGGTTGGGGCAGGGGCCGGGCCCCGTGGCC
CACACGGGCTGGCCCTCGCGCGCAGACTGTTTCCCCTGGGTTACCGCAAC
GGCGCAGACAGGGGCGGGCGAACGACCGGAGGCTTTTCCGCGTTGCCACG
AGGACTGGGGACTTTACCCCGTGGTGAATACGGCAGAATGGGTGGAGAAA
CTTCTTTCGTTCGGAGTACGAGATATCCAGCTGCGCATTAAGGGAGCCAC
CCCCGATGCGCTCAACGCCGAGGTCGCAAGGGCGGAGCGAGCGTGTCGCA
AAGCGGGCGGCCGACTCTGGGTGAACGACTTCTGGCGCACGGCAGTCCAG
CACGGGACCTACGGGGTCCACCTTGGGCAGGAGGATTTGCAGGCTGAGGG
CGGGGAGGCACTGCGCGCGATTTCGGTGGCTGGGCTTCGGCTGGGCGTCA
GCACTCACTCGTACCTGGAGCTTGCCAGAGCCGCGGCGGTTCGCCCGAGC
TACGTGTCGCTCGGACCCGTGTTCGAGACTCGGTCGAAGACGGTGGAGTT
CTCCCCGAGGGGCCCGGAGCTCGTGAGGGTGTGGAAGGCGCTCGTGGACG
TTCCTCTCATTGTCATCGGCGGCATCAGCCTCGAGACCGCTCCAAAGGCG
AGGAGGCATGGTGGAGAAACTTCTTTCGTTCGGAGTACGAGATATCCAGC
TGCGCATTAAGGGAGCCACCCCCGATGCGCTCAACGCCGAGGTCGCAAGG
GCGGAGCGAGCGTGTCGCAAAGCGGGCGGCCGACTCTGGGTGAACGACTT
CTGGCGCACGGCAGTCCAGCACGGGACCTACGGGGTCCACCTTGGGCAGG
AGGATTTGCAGGCTGAGGGCGGGGAGGCACTGCGCGCGATTTCGGTGGCT
GGGCTTCGGCTGGGCGTCAGCACTCACTCGTACCTGGAGCTTGCCAGAGC
CGCGGCGGTTCGCCCGAGCTACGTGTCGCTCGGACCCGTGTTCGAGACTC
GGTCGAAGACGGTGGAGTTCTCCCCGAGGGGCCCGGAGCTCGTGAGGGTG
TGGAAGGCGCTCGTGGACGTTCCTCTCATTGTCATCGGCGGCATCAGCCT
CGAGACCGCTCCAAAGGCGAGGAGGCATGTCTTGGAGGCTGGGGCCAACG
GTATCGCCGTGATCTCGGCGGTGACCGAGGCAGACGACGTGAGCGAGGCC
GTGCAACGATGGAACGCTGTTTTCGAGGCCAACCGCCGAGCGTAGGTCTT
GGAGGCTGGGGCCAACGGTATCGCCGTGATCTCGGCGGTGACCGAGGCAG
ACGACGTGAGCGAGGCCGTGCAACGATGGAACGCTGTTTTCGAGGCCAAC
CGCCGAGCGTAG
back to top