mRNA_H-elongata_contig68922.14535.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68922.14535.1
Unique NamemRNA_H-elongata_contig68922.14535.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig68922.14535.1 vs. uniprot
Match: D8LCA2_ECTSI (PDE318, predicted plastid-localised Nog1-like GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCA2_ECTSI)

HSP 1 Score: 296 bits (759), Expect = 1.930e-96
Identity = 144/175 (82.29%), Postives = 162/175 (92.57%), Query Frame = 1 
Query:   16 VGAPNVGKSSIIRAVSTGTPEVNSYPFTTRGMSLGHMFHPETEARYQIMDTPGVLSRPDGERNEMEALTLASMQHLPTAVVFVMDLSGYSGLQSSLESQIKVRHELRKRFPRRPWLDVVSKADLPRFGLDEAREALPDGYLDVSTQDGTGLEQLQERLFEMYGIIEGILTQASEV 540
            VGAPNVGKSSI+RAVSTGTPEVNSYPFTTRGM+LGHMFHPET ARYQIMDTPGVLSRPDGERNEMEALTLASMQHLPTAV+FVMDLSG+SG  SSLE+Q++VRHELR+RFPRRPWLDVVSKADLPR  L++A+EALP+GYLD+ST DGTG+++L+ RLFEMY IIE IL    +V
Sbjct:  309 VGAPNVGKSSIVRAVSTGTPEVNSYPFTTRGMALGHMFHPETNARYQIMDTPGVLSRPDGERNEMEALTLASMQHLPTAVIFVMDLSGHSGHLSSLENQMQVRHELRRRFPRRPWLDVVSKADLPRLELEKAKEALPEGYLDLSTLDGTGVDELKTRLFEMYEIIERILAPPPDV 483
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BLAST of mRNA_H-elongata_contig68922.14535.1 vs. uniprot
Match: A0A835YQD8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQD8_9STRA)

HSP 1 Score: 263 bits (672), Expect = 3.510e-84
Identity = 124/169 (73.37%), Postives = 148/169 (87.57%), Query Frame = 1 
Query:   16 VGAPNVGKSSIIRAVSTGTPEVNSYPFTTRGMSLGHMFHPETEARYQIMDTPGVLSRPDGERNEMEALTLASMQHLPTAVVFVMDLSGYSGLQSSLESQIKVRHELRKRFPRRPWLDVVSKADLPRFGLDEAREALPDGYLDVSTQDGTGLEQLQERLFEMYGIIEGIL 522
            VGAPNVGKSSI+R +STGTPEVN+YPFTTRGM++GHMFHP T  RYQ+MDTPGVLSRPD ERN MEALTLASMQHLPTAV+FVMDLSGYSG QS++E Q++VR+ELRKRFPRRPWLDV+SK DLPR GL+ A  +LP+GYLDVS  DG GL++L+  +++M  +IE +L
Sbjct:  228 VGAPNVGKSSIVRTLSTGTPEVNNYPFTTRGMTMGHMFHPVTNQRYQMMDTPGVLSRPDEERNCMEALTLASMQHLPTAVIFVMDLSGYSGEQSTVEKQVEVRNELRKRFPRRPWLDVISKLDLPREGLEFAASSLPEGYLDVSVHDGRGLDELRTHVYDMLQVIESVL 396
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BLAST of mRNA_H-elongata_contig68922.14535.1 vs. uniprot
Match: A0A7S3UNF7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UNF7_HETAK)

HSP 1 Score: 230 bits (586), Expect = 8.410e-73
Identity = 113/170 (66.47%), Postives = 139/170 (81.76%), Query Frame = 1 
Query:   16 VGAPNVGKSSIIRAVSTGTPEVNSYPFTTRGMSLGHMFHPETEARYQIMDTPGVLSRPDGERNEMEALTLASMQHLPTAVVFVMDLSGYSGLQSSLESQIKVRHELRKRFPRRPWLDVVSKADLPRFGLDEAREALPDGYLDVSTQDGTGLEQLQERLFEMYGIIEGILT 525
            VGAPNVGKSSI+R++STGTPEVN+YPFTTRGM++GH++HP T  + Q+MDTPGVLSRPD ERNEMEALTLASMQHLPTAV+FVMD+SG SG QSS+E QI+VR+ELR RFPRRPW+DVVSKADLPR   +E    L  G+  +S + G G+E L +R+ +M   +E +L 
Sbjct:  113 VGAPNVGKSSIVRSISTGTPEVNNYPFTTRGMTMGHLYHPATGRKAQVMDTPGVLSRPDSERNEMEALTLASMQHLPTAVMFVMDMSGLSGEQSSIEKQIEVRNELRARFPRRPWVDVVSKADLPRH-QEEILNELNWGHHSISVKTGEGVEVLCDRVIDMLEEVEQVLN 281
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BLAST of mRNA_H-elongata_contig68922.14535.1 vs. uniprot
Match: A0A7S2UYR3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYR3_9STRA)

HSP 1 Score: 230 bits (586), Expect = 6.380e-71
Identity = 115/174 (66.09%), Postives = 140/174 (80.46%), Query Frame = 1 
Query:   16 VGAPNVGKSSIIRAVSTGTPEVNSYPFTTRGMSLGHMFHPETEARYQIMDTPGVLSRPDGERNEMEALTLASMQHLPTAVVFVMDLSGYSGLQSSLESQIKVRHELRKRFPRRPWLDVVSKADLPRFGLD-EAREALPDGY--LDVSTQDGTGLEQLQERLFEMYGIIEGILTQ 528
            VGAPNVGKSSI+R+VSTGTPEVN+YPFTTRGM+LGHM+HPETEA+ Q+MDTPG+LSRPDGERNEMEALTLASMQHLPTAV+FVMD+SG SG QSS E+Q+ VR ELR RFP+RPWLDVVSK DLPR   + E  ++   G   + +S + G  + +L +R+  M   IE +L +
Sbjct:  258 VGAPNVGKSSIVRSVSTGTPEVNNYPFTTRGMTLGHMYHPETEAKSQVMDTPGLLSRPDGERNEMEALTLASMQHLPTAVIFVMDMSGLSGEQSSFEAQVAVREELRSRFPKRPWLDVVSKHDLPRDPKEWETLQSKEWGRNAMSISVKTGANIGELSDRIIGMVDTIEQVLEK 431
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BLAST of mRNA_H-elongata_contig68922.14535.1 vs. uniprot
Match: A0A4D9D853_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D853_9STRA)

HSP 1 Score: 213 bits (541), Expect = 1.640e-64
Identity = 107/171 (62.57%), Postives = 135/171 (78.95%), Query Frame = 1 
Query:   16 VGAPNVGKSSIIRAVSTGTPEVNSYPFTTRGMSLGHMFHPE-TEARYQIMDTPGVLSRPDGERNEMEALTLASMQHLPTAVVFVMDLSGYSGLQSSLESQIKVRHELRKRFPRRPWLDVVSKADLPRFGLDEAREALPDGYLDVSTQDGTGLEQLQERLFEMYGIIEGILT 525
            VGAPNVGKSSI+RA+S+GTPEVN+YPFTTRGM+LGH+ + +  E + Q+MDTPGVL+RPD ERNEME+LTLASM HLPTAV+FV+DL+G SG  SS+E+QI++R+ LR RFP+RPW+DV+SKADLP    D A    P G L VS  DGTGL  L+ R+ EM   +  +L+
Sbjct:  224 VGAPNVGKSSIVRAISSGTPEVNNYPFTTRGMTLGHLQYEDWAEGQCQVMDTPGVLNRPDEERNEMESLTLASMLHLPTAVMFVLDLTGNSGALSSIENQIQIRNGLRARFPKRPWVDVISKADLPMDQEDPAVARAPAGALKVSVADGTGLADLEARVKEMLLDVREVLS 394
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BLAST of mRNA_H-elongata_contig68922.14535.1 vs. uniprot
Match: W7U3X0_9STRA (Gtp-binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3X0_9STRA)

HSP 1 Score: 214 bits (544), Expect = 7.750e-64
Identity = 107/171 (62.57%), Postives = 136/171 (79.53%), Query Frame = 1 
Query:   16 VGAPNVGKSSIIRAVSTGTPEVNSYPFTTRGMSLGHMFHPE-TEARYQIMDTPGVLSRPDGERNEMEALTLASMQHLPTAVVFVMDLSGYSGLQSSLESQIKVRHELRKRFPRRPWLDVVSKADLPRFGLDEAREALPDGYLDVSTQDGTGLEQLQERLFEMYGIIEGILT 525
            VGAPNVGKSSI+RA+STGTPEVN+YPFTTRGM+LGH+ + +  E + Q+MDTPGVL+RPD ERNEME+LTLASM HLPTAV+FV+DL+G SG  SS+E+QI++R+ LR RFP+RPW+DV+SKADLP    D A    P G L VS  DGTGL +++ R+ EM   +  +L+
Sbjct:  333 VGAPNVGKSSIVRAISTGTPEVNNYPFTTRGMTLGHLQYEDWVEGQCQVMDTPGVLNRPDEERNEMESLTLASMLHLPTAVMFVLDLTGNSGALSSIENQIQIRNGLRARFPKRPWVDVISKADLPMDQEDPAVARAPAGALKVSVADGTGLAEVEARVKEMLLDVREVLS 503
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BLAST of mRNA_H-elongata_contig68922.14535.1 vs. uniprot
Match: A0A7S2WHZ7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WHZ7_9STRA)

HSP 1 Score: 202 bits (515), Expect = 3.680e-60
Identity = 106/186 (56.99%), Postives = 140/186 (75.27%), Query Frame = 1 
Query:   16 VGAPNVGKSSIIRAVSTGTPEVNSYPFTTRGMSLGHMFHPET--EARYQIMDTPGVLSRPDGERNEMEALTLASMQHLPTAVVFVMDLSGYSGL-QSSLESQIKVRHELRKRFPRRPWLDVVSKADLP-------RFG-LDEAREALPDGYLDVSTQDGTGLEQLQERLFEMYGIIEGILTQASEV 540
            VGAPNVGKSSII A+STGTPE+N+YPFTTRGM+LGHMF      +ARYQ+MDTPGVL+RPDG+RNEME+LT+ASM HLPTAV+FV DL+G SG  +SS+E Q  +R ELR+RFP+RPWLDVVSKADL        + G + E+ +A  + ++ VS  +  GLE+L++ +  M+  +  +L +  E+
Sbjct:  252 VGAPNVGKSSIINAISTGTPEINNYPFTTRGMTLGHMFDDVDGFQARYQVMDTPGVLARPDGDRNEMESLTIASMLHLPTAVMFVFDLTGLSGDDKSSIEDQFVLRQELRRRFPKRPWLDVVSKADLEAEPGALEKLGQVRESVQAESEDFIHVSVVNEQGLEELKDAVQRMHRAVSHVLVEYQEL 437
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BLAST of mRNA_H-elongata_contig68922.14535.1 vs. uniprot
Match: A0A7S2D428_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D428_9STRA)

HSP 1 Score: 194 bits (493), Expect = 8.660e-58
Identity = 105/180 (58.33%), Postives = 135/180 (75.00%), Query Frame = 1 
Query:   16 VGAPNVGKSSIIRAVSTGTPEVNSYPFTTRGMSLGHMFHPETEA----RYQIMDTPGVLSRPDGERNEMEALTLASMQHLPTAVVFVMDLSGYSG-LQSSLESQIKVRHELRKRFPRRPWLDVVSKADLPRF-GLDEAREAL-----PDGYLDVSTQDGTGLEQLQERLFEMYGIIEGIL 522
            VGAPNVGKSSIIRA+STGTPEV +YPFTTRG+++GHMF+ + +     ++QIMD+PGVL+R D  RNEME+LTLASMQ+LPTAV+FV DLSG SG  +SS+  Q  VR ELR+RFP+RPWLDVV+K+DLP   G  EA EAL      D  L VS   G G+E L+  +F+++  ++ +L
Sbjct:  174 VGAPNVGKSSIIRAISTGTPEVANYPFTTRGVTMGHMFYEDEKTGANNQFQIMDSPGVLAREDALRNEMESLTLASMQYLPTAVLFVFDLSGMSGEAKSSVRDQFIVRRELRRRFPKRPWLDVVAKSDLPYADGALEALEALYEETGADDLLHVSVFSGEGVEPLETAVFDLFHKVQSVL 353
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BLAST of mRNA_H-elongata_contig68922.14535.1 vs. uniprot
Match: A0A7S2D3T6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D3T6_9STRA)

HSP 1 Score: 194 bits (493), Expect = 9.170e-57
Identity = 105/180 (58.33%), Postives = 135/180 (75.00%), Query Frame = 1 
Query:   16 VGAPNVGKSSIIRAVSTGTPEVNSYPFTTRGMSLGHMFHPETEA----RYQIMDTPGVLSRPDGERNEMEALTLASMQHLPTAVVFVMDLSGYSG-LQSSLESQIKVRHELRKRFPRRPWLDVVSKADLPRF-GLDEAREAL-----PDGYLDVSTQDGTGLEQLQERLFEMYGIIEGIL 522
            VGAPNVGKSSIIRA+STGTPEV +YPFTTRG+++GHMF+ + +     ++QIMD+PGVL+R D  RNEME+LTLASMQ+LPTAV+FV DLSG SG  +SS+  Q  VR ELR+RFP+RPWLDVV+K+DLP   G  EA EAL      D  L VS   G G+E L+  +F+++  ++ +L
Sbjct:  273 VGAPNVGKSSIIRAISTGTPEVANYPFTTRGVTMGHMFYEDEKTGANNQFQIMDSPGVLAREDALRNEMESLTLASMQYLPTAVLFVFDLSGMSGEAKSSVRDQFIVRRELRRRFPKRPWLDVVAKSDLPYADGALEALEALYEETGADDLLHVSVFSGEGVEPLETAVFDLFHKVQSVL 452
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BLAST of mRNA_H-elongata_contig68922.14535.1 vs. uniprot
Match: A0A0M0JH91_9EUKA (Nucleolar gtp-binding protein 1-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JH91_9EUKA)

HSP 1 Score: 183 bits (464), Expect = 1.370e-54
Identity = 91/163 (55.83%), Postives = 123/163 (75.46%), Query Frame = 1 
Query:   16 VGAPNVGKSSIIRAVSTGTPEVNSYPFTTRGMSLGHMFHPETEARYQIMDTPGVLSRPDGERNEMEALTLASMQHLPTAVVFVMDLSGYSGLQSSLESQIKVRHELRKRFPRRPWLDVVSKADLPRFGLDEAREALPDGYLDVSTQDGTGLEQLQERLFEMYG 504
            VG PNVGKSS++ A STGTPE+++YPFTTR + LGH+     + RYQ+MDTPG+L+R + ERN ME LTLA+++HLP+AVV+VMDLSG SG QS+   Q++VR ++R+R+P RPWLDV +KADLP    +   EA+P G LDVS  DGT +  L+ R+ ++ G
Sbjct:  109 VGMPNVGKSSLVTATSTGTPEISNYPFTTRQLKLGHVIG--VQGRYQVMDTPGLLARTEDERNPMEGLTLAAVEHLPSAVVYVMDLSGTSGAQSAPLLQLRVREQVRERYPGRPWLDVRTKADLP-LADEVLPEAVPHGTLDVSVIDGTNVALLKRRMAQLVG 268
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68922.14535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCA2_ECTSI1.930e-9682.29PDE318, predicted plastid-localised Nog1-like GTPa... [more]
A0A835YQD8_9STRA3.510e-8473.37P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S3UNF7_HETAK8.410e-7366.47Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UYR3_9STRA6.380e-7166.09Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9D853_9STRA1.640e-6462.57Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7U3X0_9STRA7.750e-6462.57Gtp-binding protein n=1 Tax=Nannochloropsis gadita... [more]
A0A7S2WHZ7_9STRA3.680e-6056.99Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2D428_9STRA8.660e-5858.33Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2D3T6_9STRA9.170e-5758.33Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A0M0JH91_9EUKA1.370e-5455.83Nucleolar gtp-binding protein 1-like protein n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68922contigH-elongata_contig68922:469..2720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score297.4
Seed ortholog evalue4.7e-78
Seed eggNOG ortholog2880.D8LCA2
Preferred nameGTPBP4
KEGG koko:K06943,ko:K11269,ko:K19307
KEGG Pathwayko03008,map03008
GOsGO:0000079,GO:0000166,GO:0000226,GO:0000278,GO:0000280,GO:0000463,GO:0000470,GO:0001882,GO:0001883,GO:0001932,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005730,GO:0005737,GO:0005794,GO:0005829,GO:0006139,GO:0006275,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007162,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008156,GO:0008285,GO:0008340,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009987,GO:0010259,GO:0010467,GO:0010556,GO:0010558,GO:0010605,GO:0010646,GO:0010883,GO:0010888,GO:0012505,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019219,GO:0019220,GO:0019222,GO:0022402,GO:0022407,GO:0022408,GO:0022607,GO:0022613,GO:0023051,GO:0030155,GO:0030334,GO:0030336,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031647,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0033341,GO:0033342,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0040012,GO:0040013,GO:0042127,GO:0042254,GO:0042273,GO:0042325,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045859,GO:0045934,GO:0046483,GO:0046626,GO:0048285,GO:0048471,GO:0048519,GO:0048523,GO:0048583,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050821,GO:0051052,GO:0051053,GO:0051098,GO:0051100,GO:0051171,GO:0051172,GO:0051174,GO:0051225,GO:0051239,GO:0051246,GO:0051248,GO:0051270,GO:0051271,GO:0051338,GO:0051726,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070925,GO:0071704,GO:0071840,GO:0071900,GO:0080090,GO:0090304,GO:0090307,GO:0097159,GO:0097367,GO:0140014,GO:1900076,GO:1901265,GO:1901360,GO:1901363,GO:1902850,GO:1903047,GO:1903104,GO:1903320,GO:1903321,GO:1904029,GO:1905952,GO:1905953,GO:2000026,GO:2000112,GO:2000113,GO:2000145,GO:2000146,GO:2000241
EggNOG free text desc.negative regulation of collagen binding
EggNOG OGsCOG1084@1,KOG1490@2759
EC2.1.1.313
COG Functional cat.EGP
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03036
Hectar predicted targeting categoryother localisation
Exons4
Model size549
Cds size549
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68922.14535.1prot_H-elongata_contig68922.14535.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68922 469..2720 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931085.7111485-CDS-H-elongata_contig68922:468..6241622931085.7111485-CDS-H-elongata_contig68922:468..624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68922 469..624 +
1691679692.0071301-CDS-H-elongata_contig68922:468..6241691679692.0071301-CDS-H-elongata_contig68922:468..624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68922 469..624 +
1622931085.73207-CDS-H-elongata_contig68922:896..10521622931085.73207-CDS-H-elongata_contig68922:896..1052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68922 897..1052 +
1691679692.0203831-CDS-H-elongata_contig68922:896..10521691679692.0203831-CDS-H-elongata_contig68922:896..1052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68922 897..1052 +
1622931085.7596874-CDS-H-elongata_contig68922:1503..16761622931085.7596874-CDS-H-elongata_contig68922:1503..1676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68922 1504..1676 +
1691679692.0295882-CDS-H-elongata_contig68922:1503..16761691679692.0295882-CDS-H-elongata_contig68922:1503..1676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68922 1504..1676 +
1622931085.7989128-CDS-H-elongata_contig68922:2656..27201622931085.7989128-CDS-H-elongata_contig68922:2656..2720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68922 2657..2720 +
1691679692.0387194-CDS-H-elongata_contig68922:2656..27201691679692.0387194-CDS-H-elongata_contig68922:2656..2720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68922 2657..2720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68922.14535.1

>prot_H-elongata_contig68922.14535.1 ID=prot_H-elongata_contig68922.14535.1|Name=mRNA_H-elongata_contig68922.14535.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=183bp
MSRAQVGAPNVGKSSIIRAVSTGTPEVNSYPFTTRGMSLGHMFHPETEAR
YQIMDTPGVLSRPDGERNEMEALTLASMQHLPTAVVFVMDLSGYSGLQSS
LESQIKVRHELRKRFPRRPWLDVVSKADLPRFGLDEAREALPDGYLDVST
QDGTGLEQLQERLFEMYGIIEGILTQASEVGV*
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mRNA from alignment at H-elongata_contig68922:469..2720+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68922.14535.1 ID=mRNA_H-elongata_contig68922.14535.1|Name=mRNA_H-elongata_contig68922.14535.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2252bp|location=Sequence derived from alignment at H-elongata_contig68922:469..2720+ (Himanthalia elongata Himel1 dioecious)
ATGTCGAGGGCGCAGGTCGGAGCGCCGAACGTCGGGAAGAGTTCCATAAT
TCGAGCGGTGTCTACGGGCACCCCTGAGGTAAACAGCTATCCGTTCACCA
CGAGAGGCATGTCTCTCGGCCACATGTTCCACCCGGAGACGGAAGCGCGA
TATCAGGTGAGAGGACCGCATGGTTGTATTTGTTTTTGTATTTATTAAAG
TGTCGCATGAGCGCGAAATCCAACCCTGTCATATGCTATTATATTAATTT
TAGACTACTGTTCTCGCATTGGTTCTTGGTTTTTCCATATTGGGATGACC
AATTATGCTTGCTGCGAAAACCTCTCATCAGAACGCGATTAGGGGGGCAT
ACTCTCGTGAGTGTGTGGGGGGAGTGGGGTCCGAGAGGCGCTGTTTATAT
ATCCCTCATTGCATACCGCCCATCCCAGATAATGGATACACCCGGAGTGC
TGTCGCGGCCAGACGGCGAGCGGAACGAGATGGAGGCATTGACTCTCGCG
TCGATGCAGCACCTGCCCACGGCTGTGGTGTTCGTGATGGACCTCTCTGG
ATACAGTGGGTTACAGTCTTCTCTGGAGAGCCAGGTGTGGTGTGCGCGAT
GGCGCGGGGGAACGCCAAAAAGGCATTTAAAAAAAAAAAAAAAGTAGGGA
GAAAAACTAGAGCTATAAGTATTTCCATACCCTGGACCAGTATATATATA
TTTATTTATTTATTTTAACGTATTTGTTTTTAGGAGGATGGTAGAAAGTA
ACGAAGTCACGACTCAAACATACGCGCGGTTGAACTTTTGACGCTGCGGT
GCCATCTGTCTGTGTATCTCGTCCCGTTATATCTTCTTTTTGTTTGTTTC
TATGGCCTTCTTGTTTTCGTATACTTTTTCCTTTTTGAAGCCGTACCGTT
TCGGTTCCGTGTACTATTATAGAAACTAAGTACTATCGTGTTCTTTACAT
CTGGACGCGGATTGTTGGTGCGCTATGCTCTGGACGGTAATTGACTTTTA
AAAACTTGTACATACAATATTGAATGCTATTCTAGATTAAAGTGCGACAC
GAGCTTCGGAAGAGGTTTCCGCGGCGACCCTGGCTCGACGTGGTGAGCAA
GGCCGACCTCCCTCGGTTCGGGTTGGATGAGGCGAGGGAGGCGTTACCCG
ACGGATATCTCGACGTGTCGACGCAGGACGGGACCGGGTTGGAGCAGCTC
CAGGAACGGTGCGAAAATCCTCCTCGAGGGGGATTCATTTTCCCTTGACG
TATCGTGTCGTGCGGTGCGGTGCGTCTGTCTGCTTATCTCTACTGTATAT
CTGTCTGTTTCACTCACTACTGTGGGTAAATGTATGTGGTTGTGTCCTCT
AGCCTTCTACTCTCCTCTTCATTTATGGCGAAATGAAATAATCATGCGGT
GCTCGTCGTCGCCGTGTGCACAATTATGATCGGTCAGGGCGGTGGCGGCG
GAAATCTCTCGTGCTTTTTTACGACCTCTCAATCCTCAATTTACCGTAAT
AATAAAAATTTCAGCCTTGGGGGCGTCCTTAGATTGGCAAAGACCACACT
CTCGCGCAGAGCTTTCCCGCACTTGTCATCAGCTCCAGTGCTGATTTATT
GATTGGTTTATTTTATTTTATTTTTATGCCTCCTACATTCATACCTCTAT
ATCCCCATTTGTTTGTTTGTTTGTTTCTTTCACCGAACGTGCTCATGCTT
TTCCATACTACGACCGATGCTCGCCGTACTCTTTTACGTACTTCTTGACT
TCTCGCATAAAGAGGCGTTTTGCCGATACATCGTCGGACCATTTCAAAGA
AGAGAGGTTAGAGAATCCACATAACTTTCCCCGCGTTAGGAAGGGGAGAG
CCTAAATTAATTTTCCTTCTGGAGATAGAGTCGTTGTATCCCCTGTCGCA
ACGTTCCACGGGTGATATGTACTTACCGGAAGAGAGGGGATGAAAACGTT
TGGCCCCGGAAAGGGACGAATTTGACATCTCCCTTCCACGAATCGGGGGC
GGTAAATCAAAATTCTCCGCCCTATCGTTGGATTGGTCGTCGACACCTGT
CGTTCGTCCATTCTCCCGAGGATGCGAGGTGAGGTGAATAATCTAACGAG
GCATGCAAATATTGAGAATGCCCCCTCTCTCGTTTTGGTTGTCCTCCGTT
GATCGGCGAACGATGTCGCTCTTCTACCCCCCCCACAGACTCTTCGAAAT
GTACGGCATCATCGAGGGAATCCTTACCCAGGCGTCGGAGGTGGGAGTAT
AA
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Coding sequence (CDS) from alignment at H-elongata_contig68922:469..2720+

>mRNA_H-elongata_contig68922.14535.1 ID=mRNA_H-elongata_contig68922.14535.1|Name=mRNA_H-elongata_contig68922.14535.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1098bp|location=Sequence derived from alignment at H-elongata_contig68922:469..2720+ (Himanthalia elongata Himel1 dioecious)
ATGTCGAGGGCGCAGGTCGGAGCGCCGAACGTCGGGAAGAGTTCCATAAT
TCGAGCGGTGTCTACGGGCACCCCTGAGGTAAACAGCTATCCGTTCACCA
CGAGAGGCATGTCTCTCGGCCACATGTTCCACCCGGAGACGGAAGCGCGA
TATCAGATGTCGAGGGCGCAGGTCGGAGCGCCGAACGTCGGGAAGAGTTC
CATAATTCGAGCGGTGTCTACGGGCACCCCTGAGGTAAACAGCTATCCGT
TCACCACGAGAGGCATGTCTCTCGGCCACATGTTCCACCCGGAGACGGAA
GCGCGATATCAGATAATGGATACACCCGGAGTGCTGTCGCGGCCAGACGG
CGAGCGGAACGAGATGGAGGCATTGACTCTCGCGTCGATGCAGCACCTGC
CCACGGCTGTGGTGTTCGTGATGGACCTCTCTGGATACAGTGGGTTACAG
TCTTCTCTGGAGAGCCAGATAATGGATACACCCGGAGTGCTGTCGCGGCC
AGACGGCGAGCGGAACGAGATGGAGGCATTGACTCTCGCGTCGATGCAGC
ACCTGCCCACGGCTGTGGTGTTCGTGATGGACCTCTCTGGATACAGTGGG
TTACAGTCTTCTCTGGAGAGCCAGATTAAAGTGCGACACGAGCTTCGGAA
GAGGTTTCCGCGGCGACCCTGGCTCGACGTGGTGAGCAAGGCCGACCTCC
CTCGGTTCGGGTTGGATGAGGCGAGGGAGGCGTTACCCGACGGATATCTC
GACGTGTCGACGCAGGACGGGACCGGGTTGGAGCAGCTCCAGGAACGATT
AAAGTGCGACACGAGCTTCGGAAGAGGTTTCCGCGGCGACCCTGGCTCGA
CGTGGTGAGCAAGGCCGACCTCCCTCGGTTCGGGTTGGATGAGGCGAGGG
AGGCGTTACCCGACGGATATCTCGACGTGTCGACGCAGGACGGGACCGGG
TTGGAGCAGCTCCAGGAACGACTCTTCGAAATGTACGGCATCATCGAGGG
AATCCTTACCCAGGCGTCGGAGGTGGGAGTATAAACTCTTCGAAATGTAC
GGCATCATCGAGGGAATCCTTACCCAGGCGTCGGAGGTGGGAGTATAA
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