mRNA_H-elongata_contig68874.14526.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68874.14526.1
Unique NamemRNA_H-elongata_contig68874.14526.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68874.14526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68874contigH-elongata_contig68874:1065..2250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1186
Cds size645
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68874.14526.1prot_H-elongata_contig68874.14526.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68874 1147..1791 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931084.507228-UTR-H-elongata_contig68874:1064..11461622931084.507228-UTR-H-elongata_contig68874:1064..1146Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68874 1065..1146 +
1691679691.5506268-UTR-H-elongata_contig68874:1064..11461691679691.5506268-UTR-H-elongata_contig68874:1064..1146Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68874 1065..1146 +
1622931084.546556-UTR-H-elongata_contig68874:1791..22501622931084.546556-UTR-H-elongata_contig68874:1791..2250Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68874 1792..2250 +
1691679691.5705779-UTR-H-elongata_contig68874:1791..22501691679691.5705779-UTR-H-elongata_contig68874:1791..2250Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68874 1792..2250 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931084.5287564-CDS-H-elongata_contig68874:1146..17911622931084.5287564-CDS-H-elongata_contig68874:1146..1791Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68874 1147..1791 +
1691679691.5607526-CDS-H-elongata_contig68874:1146..17911691679691.5607526-CDS-H-elongata_contig68874:1146..1791Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68874 1147..1791 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68874.14526.1

>prot_H-elongata_contig68874.14526.1 ID=prot_H-elongata_contig68874.14526.1|Name=mRNA_H-elongata_contig68874.14526.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=215bp
MISLTKGKMCAGDGCSKQTTYGKAGSKKREFCTKHALEEMVIIKRKICGG
DGCSKQPNDGEAGSTKPEYCAKHSLEEIIDIQKIVLAGDGCSKQPNYGKA
VSTKRECCPKHVLEGMINVKKRKMCSGDGYLKTASYGKDASKKRDYSAKH
AMGGMLSIFPYNSPRSKKRVSNISSSPVSVSKICITDNKVGAPFSDTPLD
LFLVKSEVSVTKFN*
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mRNA from alignment at H-elongata_contig68874:1065..2250+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68874.14526.1 ID=mRNA_H-elongata_contig68874.14526.1|Name=mRNA_H-elongata_contig68874.14526.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1186bp|location=Sequence derived from alignment at H-elongata_contig68874:1065..2250+ (Himanthalia elongata Himel1 dioecious)
TAATGGATGTTCTAAGCAACCAACCTACGGAAAGGCTGGCAGCACAAAAC
GTGAGTACTGTGTTAAACATGCCTTGGAGGGGATGATTTCCCTAACCAAG
GGGAAAATGTGTGCCGGTGATGGATGTTCTAAGCAAACAACCTACGGAAA
GGCTGGCAGTAAGAAACGGGAGTTCTGCACTAAGCATGCCTTGGAGGAGA
TGGTTATTATAAAGAGGAAAATATGTGGCGGTGATGGGTGTTCTAAGCAA
CCAAACGACGGAGAAGCCGGAAGCACGAAACCGGAGTATTGCGCTAAGCA
TTCCTTGGAGGAAATTATTGACATTCAGAAGATTGTTTTGGCCGGTGATG
GATGTTCTAAGCAACCAAACTACGGAAAGGCTGTCAGCACGAAACGAGAG
TGCTGCCCTAAGCATGTCTTGGAAGGGATGATTAACGTTAAGAAGAGAAA
AATGTGTTCCGGTGATGGATATTTGAAGACTGCGAGCTACGGAAAGGACG
CAAGCAAGAAGCGGGATTACTCCGCAAAACATGCTATGGGTGGCATGTTG
TCCATCTTCCCTTACAACAGTCCAAGATCAAAGAAGCGGGTGTCGAATAT
CTCTTCATCGCCAGTATCCGTCTCAAAAATATGTATAACCGATAATAAGG
TTGGAGCCCCCTTTTCCGATACCCCGTTAGATTTGTTTTTGGTGAAGTCA
GAGGTATCAGTGACTAAATTTAATTAGGTATGTTTTGCAAAGTATTTAGT
TGCCGGTCTACTGGCGAACAGGAGTGGTCGCATTGCGCTCCGTCGATACT
ATGTCTTGGGTATGTTCAGCTGACCACAGGAAGGAGGCAACAAAATCCGG
TTGGTCCTTACTCTGCTATATGTTATAACCACACACATATTTGGAGCCCT
ATCATTGTTCATAATATCAGTTGAATGAGAAGGACATTGATTAAAATATT
GTTGCTTCCTCATGGCGACAACGGTTCGGAGTAGCTTTATTACTGATCTA
TGCCCATAACCGCACCGTGCAATGAGCCTCAGTATCTTGCTACAGTAGAT
TATACATGTCTGGGTCGGTACATATAGCAGTTTATGGAGCAGCGGGATAT
ATATGGAGCAATGAGCCTCAGTATCTTGCTACAGTAGATTATAGATTCTG
CTCCTGGTCAGTGAACAAGGAAAATTAATCATCATG
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Coding sequence (CDS) from alignment at H-elongata_contig68874:1065..2250+

>mRNA_H-elongata_contig68874.14526.1 ID=mRNA_H-elongata_contig68874.14526.1|Name=mRNA_H-elongata_contig68874.14526.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1290bp|location=Sequence derived from alignment at H-elongata_contig68874:1065..2250+ (Himanthalia elongata Himel1 dioecious)
ATGATTTCCCTAACCAAGGGGAAAATGTGTGCCGGTGATGGATGTTCTAA
GCAAACAACCTACGGAAAGGCTGGCAGTAAGAAACGGGAGTTCTGCACTA
AGCATGCCTTGGAGGAGATGGTTATTATAAAGAGGAAAATATGTGGCGGT
GATGGGTGTTCTAAGCAACCAAACGACGGAGAAGCCGGAAGCACGAAACC
GGAGTATTGCGCTAAGCATTCCTTGGAGGAAATTATTGACATTCAGAAGA
TTGTTTTGGCCGGTGATGGATGTTCTAAGCAACCAAACTACGGAAAGGCT
GTCAGCACGAAACGAGAGTGCTGCCCTAAGCATGTCTTGGAAGGGATGAT
TAACGTTAAGAAGAGAAAAATGTGTTCCGGTGATGGATATTTGAAGACTG
CGAGCTACGGAAAGGACGCAAGCAAGAAGCGGGATTACTCCGCAAAACAT
GCTATGGGTGGCATGTTGTCCATCTTCCCTTACAACAGTCCAAGATCAAA
GAAGCGGGTGTCGAATATCTCTTCATCGCCAGTATCCGTCTCAAAAATAT
GTATAACCGATAATAAGGTTGGAGCCCCCTTTTCCGATACCCCGTTAGAT
TTGTTTTTGGTGAAGTCAGAGGTATCAGTGACTAAATTTAATTAGATGAT
TTCCCTAACCAAGGGGAAAATGTGTGCCGGTGATGGATGTTCTAAGCAAA
CAACCTACGGAAAGGCTGGCAGTAAGAAACGGGAGTTCTGCACTAAGCAT
GCCTTGGAGGAGATGGTTATTATAAAGAGGAAAATATGTGGCGGTGATGG
GTGTTCTAAGCAACCAAACGACGGAGAAGCCGGAAGCACGAAACCGGAGT
ATTGCGCTAAGCATTCCTTGGAGGAAATTATTGACATTCAGAAGATTGTT
TTGGCCGGTGATGGATGTTCTAAGCAACCAAACTACGGAAAGGCTGTCAG
CACGAAACGAGAGTGCTGCCCTAAGCATGTCTTGGAAGGGATGATTAACG
TTAAGAAGAGAAAAATGTGTTCCGGTGATGGATATTTGAAGACTGCGAGC
TACGGAAAGGACGCAAGCAAGAAGCGGGATTACTCCGCAAAACATGCTAT
GGGTGGCATGTTGTCCATCTTCCCTTACAACAGTCCAAGATCAAAGAAGC
GGGTGTCGAATATCTCTTCATCGCCAGTATCCGTCTCAAAAATATGTATA
ACCGATAATAAGGTTGGAGCCCCCTTTTCCGATACCCCGTTAGATTTGTT
TTTGGTGAAGTCAGAGGTATCAGTGACTAAATTTAATTAG
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